>ELI9_HORVU (P14897) Low molecular mass early light-inducible protein HV90,|
           chloroplast precursor (ELIP)
          Length = 172

 Score =  211 bits (538), Expect = 8e-55
 Identities = 116/145 (80%), Positives = 116/145 (80%)
 Frame = -3

Query: 547 SLPALGRRTLVVRAQTEGXXXXXXXXXXXXTSIWDAMAFSGPAPERINGRLAMVGFVTAL 368
           SLPALGRR LVVRAQTEG            TSIWD MAFSGPAPERINGRLAMVGFVTAL
Sbjct: 28  SLPALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTAL 87

Query: 367 AVEAXXXXXXXXXXXXXXXQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWN 188
           AVEA               QAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWN
Sbjct: 88  AVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWN 147

Query: 187 GRFAMLGLVALAATEIITGAPFINV 113
           GRFAMLGLVALAATEIITGAPFINV
Sbjct: 148 GRFAMLGLVALAATEIITGAPFINV 172

>ELI6_HORVU (P14896) Low molecular mass early light-inducible protein HV60,|
           chloroplast precursor (ELIP)
          Length = 167

 Score =  211 bits (538), Expect = 8e-55
 Identities = 115/145 (79%), Positives = 117/145 (80%)
 Frame = -3

Query: 547 SLPALGRRTLVVRAQTEGXXXXXXXXXXXXTSIWDAMAFSGPAPERINGRLAMVGFVTAL 368
           SLPALGRRTLVVRAQTEG            TSIWDAMAFSGPAPERINGRLAMVGFVTAL
Sbjct: 23  SLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTAL 82

Query: 367 AVEAXXXXXXXXXXXXXXXQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWN 188
           AVEA               QAWFAYTVA+LSMASLVPLLQGESAEGRAGAIMNANAELWN
Sbjct: 83  AVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWN 142

Query: 187 GRFAMLGLVALAATEIITGAPFINV 113
           GRFAM+GLVALAATEIITG PFINV
Sbjct: 143 GRFAMIGLVALAATEIITGTPFINV 167

>ELI5_HORVU (P14895) High molecular mass early light-inducible protein HV58,|
           chloroplast precursor (ELIP)
          Length = 231

 Score =  145 bits (367), Expect = 6e-35
 Identities = 74/115 (64%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
 Frame = -3

Query: 454 SIWDAMAFSGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXX-XXXQAWFAYTVAVL 278
           S+WDA+AFSGPAPERINGRLAMVGFV AL+VEA                 AWF  T  V 
Sbjct: 117 SVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVF 176

Query: 277 SMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 113
           S+ASL+PLLQG+S E ++  I +A+AELWNGRFAMLGLVALAATE ITGAPF+N+
Sbjct: 177 SVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFVNI 231

>ELI_PEA (P11432) Early light-induced protein, chloroplast precursor (ELIP)|
          Length = 196

 Score =  112 bits (280), Expect = 7e-25
 Identities = 58/109 (53%), Positives = 71/109 (65%)
 Frame = -3

Query: 445 DAMAFSGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXQAWFAYTVAVLSMAS 266
           D MAFSGPAPERINGRLAM+GFV A+ VE                 AWF  T  +LS+AS
Sbjct: 89  DLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGV-AWFLGTSVLLSLAS 147

Query: 265 LVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 119
           L+P  QG S E ++ +IM+++AE WNGR AMLGLVALA TE + G   +
Sbjct: 148 LIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196

>DS22_CRAPL (Q01931) Desiccation stress protein DSP-22, chloroplast precursor|
          Length = 199

 Score =  103 bits (258), Expect = 2e-22
 Identities = 54/111 (48%), Positives = 68/111 (61%)
 Frame = -3

Query: 445 DAMAFSGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXQAWFAYTVAVLSMAS 266
           D  +F G APERINGR AM+GFV A+ VE                  WF  T AVL +A+
Sbjct: 90  DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVM-WFLLTSAVLVLAT 148

Query: 265 LVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 113
           L+P+ +G S E +     N++AE+WNGRFAM+GLVALA TE + G P INV
Sbjct: 149 LIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLINV 199

>CBR_DUNBA (P27516) Carotene biosynthesis-related protein CBR, chloroplast|
           precursor
          Length = 172

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 42/108 (38%), Positives = 53/108 (49%)
 Frame = -3

Query: 454 SIWDAMAFSGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXQAWFAYTVAVLS 275
           ++ + M FSG APE INGRLAM+GFV AL  E                    A T  + S
Sbjct: 66  TVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTL--IALTFVLFS 122

Query: 274 MASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITG 131
            ASL+P       +G A      +AE+ NGRFAM+G  A+   E I G
Sbjct: 123 AASLIPAF--ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168

>NEST_RAT (P21263) Nestin|
          Length = 1805

 Score = 36.6 bits (83), Expect = 0.048
 Identities = 28/69 (40%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
 Frame = +2

Query: 308 LSGAAAELREEPVAAACLHRQRRHEAHHGKAPVDALRRRAAERHRVP-------DRGGRL 466
           LS  AAEL  E  A    H + R  AH       A RR  A  HR+P       D   RL
Sbjct: 126 LSTQAAELERELEALRAAHEEER--AHLNAQAACAPRRPPAPPHRIPGPAPEVEDLARRL 183

Query: 467 GFVWRWCVR 493
           G VWR  VR
Sbjct: 184 GEVWRGAVR 192

>YCF17_PORPU (P51355) Hypothetical 5.5 kDa protein ycf17 (ORF48)|
          Length = 48

 Score = 36.6 bits (83), Expect = 0.048
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -3

Query: 205 NAELWNGRFAMLGLVALAATEIITG 131
           +AE WNGRFAM+G +A+   E++TG
Sbjct: 13  SAETWNGRFAMIGFMAVIFIELVTG 37

>HEMH_ANASP (Q8YQR8) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 388

 Score = 36.6 bits (83), Expect = 0.048
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = -3

Query: 214 MNANAELWNGRFAMLGLVALAATEIITGAPFINV 113
           M ++AE+WNGR AMLG +AL   E++TG   +++
Sbjct: 351 MTSSAEVWNGRIAMLGFIAL-IIELVTGQGLLHM 383

>HEMH_ORYSA (O22101) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)|
           (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme
           synthetase 2)
          Length = 526

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 205 NAELWNGRFAMLGLVALAATEIITGAPFIN 116
           +AE WNGR AML ++AL   E+ TG  F++
Sbjct: 488 SAETWNGRAAMLAVLALLVLEVTTGEGFLH 517

>HEMH2_ARATH (O04921) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)|
           (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme
           synthetase 2)
          Length = 512

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 205 NAELWNGRFAMLGLVALAATEIITGAPFIN 116
           +AE WNGR AML ++AL   E+ TG  F++
Sbjct: 475 SAETWNGRAAMLAVLALLVLEVTTGKGFLH 504

>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17|
          Length = 49

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -3

Query: 208 ANAELWNGRFAMLGLVALAATEIITG 131
           + AE WNGR AMLG +A   TE +TG
Sbjct: 14  SGAENWNGRLAMLGFIAALLTESLTG 39



 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -3

Query: 454 SIWDAMAFSGPAPERINGRLAMVGFVTALAVEA 356
           +IW+    SG   E  NGRLAM+GF+ AL  E+
Sbjct: 6   NIWNWGFTSGA--ENWNGRLAMLGFIAALLTES 36

>HEMH_SYNP6 (Q5N2B2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 387

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = -3

Query: 205 NAELWNGRFAMLGLVALAATEIITG 131
           NAE+WNGR AMLG +AL   E++TG
Sbjct: 354 NAEVWNGRIAMLGFLAL-LVELLTG 377

>HEMH_SYNY3 (P54225) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 387

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -3

Query: 202 AELWNGRFAMLGLVALAATEIITG 131
           AE+WNGR AMLG +AL   E+I+G
Sbjct: 355 AEVWNGRLAMLGFIAL-LVELISG 377

>HEMH_SYNEL (Q8DGU6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 388

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = -3

Query: 214 MNANAELWNGRFAMLGLVALAATEIITG 131
           M + AE WNGR AMLG +AL   E+I+G
Sbjct: 352 MTSAAERWNGRLAMLGFLAL-MIELISG 378

>HEMH_PROMM (Q7V6C6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 391

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 214 MNANAELWNGRFAMLGLVALAATEIITG 131
           +N ++E WNGR AMLG  A    E+I+G
Sbjct: 355 LNTSSEAWNGRIAMLGFAAF-LLELISG 381

>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCI type III CAB-4) (LHCP)
          Length = 251

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 202 AELWNGRFAMLGLVALAATEIITGAPFINV 113
           AEL NGR+AMLG+  +   E+ T    INV
Sbjct: 95  AELVNGRWAMLGVAGMLLPEVFTKIGIINV 124

>GELS_CHICK (O93510) Gelsolin precursor (Actin-depolymerizing factor) (ADF)|
           (Brevin) (Homogenin)
          Length = 778

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 293 VGEPRLSGAAAELREEPVAAACLHRQRRHEAHHG 394
           +GE  +SG  A++ + P  AA LH  R   A HG
Sbjct: 401 LGEAYISGHVAKIEKVPFDAATLHTSRAMAAQHG 434

>HEMH_SYNPX (Q7U5G0) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 391

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 211 NANAELWNGRFAMLGLVALAATEIITG 131
           N ++E+WNGR AMLG  A    E+I+G
Sbjct: 356 NNSSEVWNGRLAMLGFSAF-LLELISG 381

>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCI type III CAB-8)
          Length = 273

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -3

Query: 208 ANAELWNGRFAMLGLVALAATEIITGAPFINV*NKIASLSTG 83
           A  E+ NGRFAMLG     A EI+  A  I     +A   TG
Sbjct: 97  AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTG 138

>GLUQ_RHOBA (Q7UHE2) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)|
          Length = 329

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +2

Query: 419 RRAAERH------RVPDRGGRLGFVWRWCVRALGLCPDDEGASAQR 538
           RR A+RH         ++G     + RW  ++ GLCPD + A ++R
Sbjct: 251 RRLAKRHGDTRLSHFREQGMPPETIVRWAAKSSGLCPDSDAALSER 296

>YCF17_GUITH (O78425) Hypothetical 6.2 kDa protein ycf17|
          Length = 53

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 211 NANAELWNGRFAMLGLVALAATEIIT 134
           N  AE WNGR AM+  + +   E IT
Sbjct: 17  NVYAENWNGRLAMISFLLIICVEFIT 42

>TRAG1_ECOLI (P33790) Protein traG|
          Length = 938

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 15  NTXHXSVLTIYVHVL--LAKYMLCYPVDSEAILFYTLMKGAPVMIS 146
           N    SVL  YV  L  L  + L Y + + A+ FY    GAPV++S
Sbjct: 350 NKLTLSVLKGYVFALMWLQTWPLLYAILNSAMTFYAKQNGAPVVLS 395

>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor|
           [Contains: LH35 protein 1; LH35 protein 2] (Fragment)
          Length = 331

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 202 AELWNGRFAMLGLVALAATEIITGAPFINV*NKI 101
           AE++NGR AML +V     E++    +  V NK+
Sbjct: 10  AEVFNGRLAMLAIVGCVYPELLGNGVWFEVWNKV 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,713,155
Number of Sequences: 219361
Number of extensions: 867768
Number of successful extensions: 3002
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2987
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)