ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaak4j04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15692.1|HVLP90 Barley mRNA for chloroplast low molecular mass early light-inducible protein (ELIP) (clone HV90) Length = 660 Score = 858 bits (433), Expect = 0.0 Identities = 484/501 (96%) Strand = Plus / Minus Query: 49 tacatgtcctactagctaagtacatgttgtgttatccggtcgacagcgaagctattttat 108 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct: 610 tacatgtcctactagctaagtacatgttgtgttatcctgtcgacagcaaagctattttat 551 Query: 109 tctacacgttgatgaagggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtc 168 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 550 tctacacgttgatgaaaggcgcgccggtgatgatctcggtggcggccagcgcgacgagtc 491 Query: 169 cgagcatggcgaagcggccgttccagagctccgcgttggcgttcatgatggcgccggctc 228 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 490 cgagcatggcgaagcggccgttccagagttccgcgttggcgttcatgatggcgccggctc 431 Query: 229 tgccctcggcgctctcgccctgaagcaacggcaccagcgacgccatggacagcaccgcca 288 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 430 tgccctcggcgctctcgccctggagcagcggcaccagcgacgccatggacagcaccgcca 371 Query: 289 cggtgtaggcgaaccacgcctgtccggtgccgctgccgagctgcgagaggagcccgtcgc 348 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 370 cggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagaggagcccgtcgc 311 Query: 349 cgcggcctgcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttga 408 |||| |||||||||||||| |||||||||||||||||||||||||| || |||||||||| Sbjct: 310 cgcgccctgcctccaccgcaagcgccgtcacgaagcccaccatggctagccgcccgttga 251 Query: 409 tgcgctccggcgcagggccgctgaacgccatcgcgtcccagatcgaggtggtcgccttgg 468 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 250 tgcgctccggcgcagggccgctgaacgccatctcgtcccagatcgaggtgctcgccttgg 191 Query: 469 gtttgtttggcggtggtgcgttcgggccctcggtctgtgccctgacgacgagggtgcgtc 528 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct: 190 gtttgtttggcggtggtgcgctcgggccctcggtctgtgccctgacgacgagggcgcgtc 131 Query: 529 ggcccaacgctggcagagacc 549 |||||| |||||||||||||| Sbjct: 130 ggcccagcgctggcagagacc 110
>emb|X15691.1|HVLP60 Barley mRNA for chloroplast low molecular mass early light-inducible protein (ELIP) (clone HV60) Length = 764 Score = 858 bits (433), Expect = 0.0 Identities = 484/501 (96%) Strand = Plus / Minus Query: 49 tacatgtcctactagctaagtacatgttgtgttatccggtcgacagcgaagctattttat 108 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | Sbjct: 691 tacatgtcctactagctaagtacaggttgtgttatccggtcgacagcaaagctattttct 632 Query: 109 tctacacgttgatgaagggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtc 168 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 631 tctacacgttgatgaagggggtgccggtgatgatctcggtggcggcgagcgcgacgagtc 572 Query: 169 cgagcatggcgaagcggccgttccagagctccgcgttggcgttcatgatggcgccggctc 228 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 cgatcatggcgaagcggccgttccagagctccgcgttggcgttcatgatggcgccggctc 512 Query: 229 tgccctcggcgctctcgccctgaagcaacggcaccagcgacgccatggacagcaccgcca 288 |||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| Sbjct: 511 tgccctcggcgctctcgccctggagcagcggcaccagcgacgccatggacagcatcgcca 452 Query: 289 cggtgtaggcgaaccacgcctgtccggtgccgctgccgagctgcgagaggagcccgtcgc 348 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 451 cggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagaggagcccgtcgc 392 Query: 349 cgcggcctgcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttga 408 |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| Sbjct: 391 cgcggcctgcctccacagccagcgccgtcacgaagcccaccatggctagccgcccgttga 332 Query: 409 tgcgctccggcgcagggccgctgaacgccatcgcgtcccagatcgaggtggtcgccttgg 468 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 331 tgcgctccggcgcagggccgctgaacgccatcgcgtcccagatggaggtgctcgccttgg 272 Query: 469 gtttgtttggcggtggtgcgttcgggccctcggtctgtgccctgacgacgagggtgcgtc 528 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 271 gtttgtttggcggtggtgcgttcgggccctcggtctgtgccctgacgacgagggtacgtc 212 Query: 529 ggcccaacgctggcagagacc 549 |||||| |||||||||||||| Sbjct: 211 ggcccagcgctggcagagacc 191
>dbj|AB019617.1| Triticum aestivum wcr (wheat cold-regulated) 12 mRNA for early light-inducible protein (ELIP), complete cds Length = 818 Score = 595 bits (300), Expect = e-167 Identities = 451/500 (90%), Gaps = 1/500 (0%) Strand = Plus / Minus Query: 49 tacatgtcctactagctaagtacatgttgtgttatccggtcgacagcgaagctattttat 108 |||||||||||||| ||||||||| ||||||| ||||||||||| | |||||||| | Sbjct: 699 tacatgtcctactaactaagtacagtttgtgttgtccggtcgacaacaaagctattagtt 640 Query: 109 tctacacgttgatgaagggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtc 168 | ||||||||||||||||||||||| ||||||||||| || || || || |||||||||| Sbjct: 639 t-tacacgttgatgaagggcgcgccagtgatgatctccgttgccgccagagcgacgagtc 581 Query: 169 cgagcatggcgaagcggccgttccagagctccgcgttggcgttcatgatggcgccggctc 228 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 580 cgagcatggcgaagcggccgttccagagctccgcgttggcgttcatgatgataccggctc 521 Query: 229 tgccctcggcgctctcgccctgaagcaacggcaccagcgacgccatggacagcaccgcca 288 |||||||||||||||| || || |||| ||||||||| || | | ||| ||| ||||| Sbjct: 520 tgccctcggcgctctctccttggagcagcggcaccagagaagatacggatagccacgcca 461 Query: 289 cggtgtaggcgaaccacgcctgtccggtgccgctgccgagctgcgagaggagcccgtcgc 348 ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct: 460 cggagtaggcgaaccacgcctgcccggtgccgctgccgagctgcgaaaggagcccgtcgc 401 Query: 349 cgcggcctgcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttga 408 |||| ||||||||||| || |||||||||||||| ||||||||||| |||||||| || | Sbjct: 400 cgcgccctgcctccacggcgagcgccgtcacgaaacccaccatggccaggcgcccattaa 341 Query: 409 tgcgctccggcgcagggccgctgaacgccatcgcgtcccagatcgaggtggtcgccttgg 468 |||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| Sbjct: 340 tgcgctccggcgcagggccgctgaacgccagcgcgtcccagatagaggtgctcgccttgg 281 Query: 469 gtttgtttggcggtggtgcgttcgggccctcggtctgtgccctgacgacgagggtgcgtc 528 |||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| Sbjct: 280 gtttgtttggcggtggtgcgctcgggcccccggtctgtgccctgacgacgagggcgcgtc 221 Query: 529 ggcccaacgctggcagagac 548 ||||| ||||||||||||| Sbjct: 220 tgcccagcgctggcagagac 201
>gb|AF365951.1|AF365951 Zea mays early light-inducible protein ELIP mRNA, complete cds; nuclear gene for chloroplast product Length = 852 Score = 228 bits (115), Expect = 2e-56 Identities = 288/345 (83%), Gaps = 3/345 (0%) Strand = Plus / Minus Query: 106 tattctacacgttgatgaagggcgcgccggtgatgatctcggtggcggcgagcgcgacga 165 |||| |||||||||| ||||||||||||||| | | ||||||| ||||||||||||||| Sbjct: 657 tattttacacgttgacgaagggcgcgccggtaaggtactcggtgacggcgagcgcgacga 598 Query: 166 gtccgagcatggcgaagcggccgttccagagctccgcgttggcgttcatgatggcgccgg 225 | |||||||||||||||||||||||||||||||| |||| |||| |||||| |||| Sbjct: 597 ggccgagcatggcgaagcggccgttccagagctcggcgtcggcggtcatgaaccggccgc 538 Query: 226 ctctgccctcggcgctctcgccctgaagcaacggcaccagcgacgccatggacagcaccg 285 ||||||||||||||||| ||||| |||| ||||||||| ||||| |||||| || | Sbjct: 537 tcctgccctcggcgctctccccctggagcagcggcaccagggacgcggcggacaggacgg 478 Query: 286 ccacggtgtaggcgaaccacgcctgtccggtgccgctgccgagctgcgagaggagcccgt 345 | ||||||| ||||||||||| | |||| |||| |||| ||||||||| |||| Sbjct: 477 cggcggtgtacgcgaaccacgcgaggccggcgccgttgcc---tggcgagaggatgccgt 421 Query: 346 cgccgcggcctgcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgt 405 |||||||| ||||| || || ||||| | ||||||||||||||| || || ||||||| Sbjct: 420 cgccgcgggtggcctcgacggcgagcgcggacacgaagcccaccatcgccagccgcccgt 361 Query: 406 tgatgcgctccggcgcagggccgctgaacgccatcgcgtcccaga 450 |||| ||||||||||| || ||||||||||||| ||||||||||| Sbjct: 360 tgatccgctccggcgcgggcccgctgaacgccagcgcgtcccaga 316
>ref|XM_476844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 603 Score = 180 bits (91), Expect = 3e-42 Identities = 265/323 (82%) Strand = Plus / Minus Query: 126 ggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagcatggcgaagcgg 185 |||| |||||||| || ||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 587 ggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcatggcgaagcgg 528 Query: 186 ccgttccagagctccgcgttggcgttcatgatggcgccggctctgccctcggcgctctcg 245 |||||||||||||| |||| |||| |||| | | ||||| || |||| ||||||||| Sbjct: 527 ccgttccagagctcagcgtcggcgctcatcacgccgccgctcctcgcctccgcgctctcg 468 Query: 246 ccctgaagcaacggcaccagcgacgccatggacagcaccgccacggtgtaggcgaaccac 305 || | |||| |||||||||||||||| ||| ||||| || ||||| |||||||||| Sbjct: 467 ccgcggagcagcggcaccagcgacgccgcggagagcacggcggcggtggcggcgaaccac 408 Query: 306 gcctgtccggtgccgctgccgagctgcgagaggagcccgtcgccgcggcctgcctccacc 365 || | ||| ||||||||| |||| ||||||||| ||||||| |||||||| Sbjct: 407 gcgagcccgcccccgctgccggcctgctccaggagcccgccgccgcgcgacgcctccacg 348 Query: 366 gccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctccggcgcaggg 425 || ||||||| |||||| |||||||| || || ||||||||||| ||||||||||| || Sbjct: 347 gcgagcgccgacacgaaccccaccatcgccagccgcccgttgatccgctccggcgccggc 288 Query: 426 ccgctgaacgccatcgcgtccca 448 ||||||||||||| | ||||||| Sbjct: 287 ccgctgaacgccagcacgtccca 265
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 180 bits (91), Expect = 3e-42 Identities = 265/323 (82%) Strand = Plus / Minus Query: 126 ggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagcatggcgaagcgg 185 |||| |||||||| || ||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 4176377 ggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcatggcgaagcgg 4176318 Query: 186 ccgttccagagctccgcgttggcgttcatgatggcgccggctctgccctcggcgctctcg 245 |||||||||||||| |||| |||| |||| | | ||||| || |||| ||||||||| Sbjct: 4176317 ccgttccagagctcagcgtcggcgctcatcacgccgccgctcctcgcctccgcgctctcg 4176258 Query: 246 ccctgaagcaacggcaccagcgacgccatggacagcaccgccacggtgtaggcgaaccac 305 || | |||| |||||||||||||||| ||| ||||| || ||||| |||||||||| Sbjct: 4176257 ccgcggagcagcggcaccagcgacgccgcggagagcacggcggcggtggcggcgaaccac 4176198 Query: 306 gcctgtccggtgccgctgccgagctgcgagaggagcccgtcgccgcggcctgcctccacc 365 || | ||| ||||||||| |||| ||||||||| ||||||| |||||||| Sbjct: 4176197 gcgagcccgcccccgctgccggcctgctccaggagcccgccgccgcgcgacgcctccacg 4176138 Query: 366 gccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctccggcgcaggg 425 || ||||||| |||||| |||||||| || || ||||||||||| ||||||||||| || Sbjct: 4176137 gcgagcgccgacacgaaccccaccatcgccagccgcccgttgatccgctccggcgccggc 4176078 Query: 426 ccgctgaacgccatcgcgtccca 448 ||||||||||||| | ||||||| Sbjct: 4176077 ccgctgaacgccagcacgtccca 4176055 Score = 172 bits (87), Expect = 8e-40 Identities = 273/335 (81%) Strand = Plus / Minus Query: 114 acgttgatgaagggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagc 173 ||||||| |||||||| |||||||| || ||||||| |||||| |||||||| |||||| Sbjct: 4178830 acgttgacgaagggcgagccggtgaggaactcggtgaaggcgagggcgacgaggccgagc 4178771 Query: 174 atggcgaagcggccgttccagagctccgcgttggcgttcatgatggcgccggctctgccc 233 |||||||||||||||||||||||||| |||| |||| |||| | | ||||| || || Sbjct: 4178770 atggcgaagcggccgttccagagctcggcgtcggcgctcatcacgccgccgctcctcgcc 4178711 Query: 234 tcggcgctctcgccctgaagcaacggcaccagcgacgccatggacagcaccgccacggtg 293 || ||||||||||| | |||| |||||||||||||||| ||| ||||| | ||||| Sbjct: 4178710 tccgcgctctcgccgcggagcagcggcaccagcgacgccgcggagagcacggtggcggtg 4178651 Query: 294 taggcgaaccacgcctgtccggtgccgctgccgagctgcgagaggagcccgtcgccgcgg 353 |||||||||||| | ||| ||||||||| |||| ||||||||| |||| || Sbjct: 4178650 gcggcgaaccacgcgagcccgtccccgctgccggcctgctccaggagcccgccgccccgc 4178591 Query: 354 cctgcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgc 413 |||||||| || ||||||| |||||| |||||||| || || ||||||||||| ||| Sbjct: 4178590 gacgcctccacggcgagcgccgacacgaaccccaccatcgccagccgcccgttgatccgc 4178531 Query: 414 tccggcgcagggccgctgaacgccatcgcgtccca 448 |||||||| || ||||||||||||| | ||||||| Sbjct: 4178530 tccggcgccggcccgctgaacgccagcacgtccca 4178496 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cgccatcgcgtcccagatcg 453 |||||||||||||||||||| Sbjct: 3291286 cgccatcgcgtcccagatcg 3291267
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 180 bits (91), Expect = 3e-42 Identities = 265/323 (82%) Strand = Plus / Minus Query: 126 ggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagcatggcgaagcgg 185 |||| |||||||| || ||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 59999 ggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcatggcgaagcgg 59940 Query: 186 ccgttccagagctccgcgttggcgttcatgatggcgccggctctgccctcggcgctctcg 245 |||||||||||||| |||| |||| |||| | | ||||| || |||| ||||||||| Sbjct: 59939 ccgttccagagctcagcgtcggcgctcatcacgccgccgctcctcgcctccgcgctctcg 59880 Query: 246 ccctgaagcaacggcaccagcgacgccatggacagcaccgccacggtgtaggcgaaccac 305 || | |||| |||||||||||||||| ||| ||||| || ||||| |||||||||| Sbjct: 59879 ccgcggagcagcggcaccagcgacgccgcggagagcacggcggcggtggcggcgaaccac 59820 Query: 306 gcctgtccggtgccgctgccgagctgcgagaggagcccgtcgccgcggcctgcctccacc 365 || | ||| ||||||||| |||| ||||||||| ||||||| |||||||| Sbjct: 59819 gcgagcccgcccccgctgccggcctgctccaggagcccgccgccgcgcgacgcctccacg 59760 Query: 366 gccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctccggcgcaggg 425 || ||||||| |||||| |||||||| || || ||||||||||| ||||||||||| || Sbjct: 59759 gcgagcgccgacacgaaccccaccatcgccagccgcccgttgatccgctccggcgccggc 59700 Query: 426 ccgctgaacgccatcgcgtccca 448 ||||||||||||| | ||||||| Sbjct: 59699 ccgctgaacgccagcacgtccca 59677 Score = 172 bits (87), Expect = 8e-40 Identities = 273/335 (81%) Strand = Plus / Minus Query: 114 acgttgatgaagggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagc 173 ||||||| |||||||| |||||||| || ||||||| |||||| |||||||| |||||| Sbjct: 62452 acgttgacgaagggcgagccggtgaggaactcggtgaaggcgagggcgacgaggccgagc 62393 Query: 174 atggcgaagcggccgttccagagctccgcgttggcgttcatgatggcgccggctctgccc 233 |||||||||||||||||||||||||| |||| |||| |||| | | ||||| || || Sbjct: 62392 atggcgaagcggccgttccagagctcggcgtcggcgctcatcacgccgccgctcctcgcc 62333 Query: 234 tcggcgctctcgccctgaagcaacggcaccagcgacgccatggacagcaccgccacggtg 293 || ||||||||||| | |||| |||||||||||||||| ||| ||||| | ||||| Sbjct: 62332 tccgcgctctcgccgcggagcagcggcaccagcgacgccgcggagagcacggtggcggtg 62273 Query: 294 taggcgaaccacgcctgtccggtgccgctgccgagctgcgagaggagcccgtcgccgcgg 353 |||||||||||| | ||| ||||||||| |||| ||||||||| |||| || Sbjct: 62272 gcggcgaaccacgcgagcccgtccccgctgccggcctgctccaggagcccgccgccccgc 62213 Query: 354 cctgcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgc 413 |||||||| || ||||||| |||||| |||||||| || || ||||||||||| ||| Sbjct: 62212 gacgcctccacggcgagcgccgacacgaaccccaccatcgccagccgcccgttgatccgc 62153 Query: 414 tccggcgcagggccgctgaacgccatcgcgtccca 448 |||||||| || ||||||||||||| | ||||||| Sbjct: 62152 tccggcgccggcccgctgaacgccagcacgtccca 62118
>ref|XM_476845.1| Oryza sativa (japonica cultivar-group), mRNA Length = 564 Score = 172 bits (87), Expect = 8e-40 Identities = 273/335 (81%) Strand = Plus / Minus Query: 114 acgttgatgaagggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagc 173 ||||||| |||||||| |||||||| || ||||||| |||||| |||||||| |||||| Sbjct: 560 acgttgacgaagggcgagccggtgaggaactcggtgaaggcgagggcgacgaggccgagc 501 Query: 174 atggcgaagcggccgttccagagctccgcgttggcgttcatgatggcgccggctctgccc 233 |||||||||||||||||||||||||| |||| |||| |||| | | ||||| || || Sbjct: 500 atggcgaagcggccgttccagagctcggcgtcggcgctcatcacgccgccgctcctcgcc 441 Query: 234 tcggcgctctcgccctgaagcaacggcaccagcgacgccatggacagcaccgccacggtg 293 || ||||||||||| | |||| |||||||||||||||| ||| ||||| | ||||| Sbjct: 440 tccgcgctctcgccgcggagcagcggcaccagcgacgccgcggagagcacggtggcggtg 381 Query: 294 taggcgaaccacgcctgtccggtgccgctgccgagctgcgagaggagcccgtcgccgcgg 353 |||||||||||| | ||| ||||||||| |||| ||||||||| |||| || Sbjct: 380 gcggcgaaccacgcgagcccgtccccgctgccggcctgctccaggagcccgccgccccgc 321 Query: 354 cctgcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgc 413 |||||||| || ||||||| |||||| |||||||| || || ||||||||||| ||| Sbjct: 320 gacgcctccacggcgagcgccgacacgaaccccaccatcgccagccgcccgttgatccgc 261 Query: 414 tccggcgcagggccgctgaacgccatcgcgtccca 448 |||||||| || ||||||||||||| | ||||||| Sbjct: 260 tccggcgccggcccgctgaacgccagcacgtccca 226
>ref|NM_188763.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 165 bits (83), Expect = 2e-37 Identities = 263/323 (81%) Strand = Plus / Minus Query: 126 ggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagcatggcgaagcgg 185 |||| |||||||| || ||||||| ||||||||||||||| |||||||||||||| || Sbjct: 593 ggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcatggcgaaccgc 534 Query: 186 ccgttccagagctccgcgttggcgttcatgatggcgccggctctgccctcggcgctctcg 245 |||||||||||||| |||| |||| |||| | | ||||| || |||| ||| ||||| Sbjct: 533 ccgttccagagctcggcgtcggcgctcatcacgccgccgctcctcgcctccgcggtctcg 474 Query: 246 ccctgaagcaacggcaccagcgacgccatggacagcaccgccacggtgtaggcgaaccac 305 || | |||| |||||||||||||||| ||| ||||| || ||||| |||||||||| Sbjct: 473 ccgcggagcagcggcaccagcgacgccgcggagagcacggcggcggtggcggcgaaccac 414 Query: 306 gcctgtccggtgccgctgccgagctgcgagaggagcccgtcgccgcggcctgcctccacc 365 ||| | ||| | | ||||||| ||| ||||||||| ||||||| |||||||| Sbjct: 413 gccagcccgctccagctgccggcctggtccaggagcccgccgccgcgcgacgcctccacg 354 Query: 366 gccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctccggcgcaggg 425 |||||||||| |||||| |||||||| || || ||||||||||| ||||||||||| || Sbjct: 353 gccagcgccgacacgaaccccaccatcgccagccgcccgttgatccgctccggcgccggc 294 Query: 426 ccgctgaacgccatcgcgtccca 448 ||||||||||||| | ||||||| Sbjct: 293 ccgctgaacgccagcacgtccca 271
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 165 bits (83), Expect = 2e-37 Identities = 263/323 (81%) Strand = Plus / Minus Query: 126 ggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagcatggcgaagcgg 185 |||| |||||||| || ||||||| ||||||||||||||| |||||||||||||| || Sbjct: 25805 ggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcatggcgaaccgc 25746 Query: 186 ccgttccagagctccgcgttggcgttcatgatggcgccggctctgccctcggcgctctcg 245 |||||||||||||| |||| |||| |||| | | ||||| || |||| ||| ||||| Sbjct: 25745 ccgttccagagctcggcgtcggcgctcatcacgccgccgctcctcgcctccgcggtctcg 25686 Query: 246 ccctgaagcaacggcaccagcgacgccatggacagcaccgccacggtgtaggcgaaccac 305 || | |||| |||||||||||||||| ||| ||||| || ||||| |||||||||| Sbjct: 25685 ccgcggagcagcggcaccagcgacgccgcggagagcacggcggcggtggcggcgaaccac 25626 Query: 306 gcctgtccggtgccgctgccgagctgcgagaggagcccgtcgccgcggcctgcctccacc 365 ||| | ||| | | ||||||| ||| ||||||||| ||||||| |||||||| Sbjct: 25625 gccagcccgctccagctgccggcctggtccaggagcccgccgccgcgcgacgcctccacg 25566 Query: 366 gccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctccggcgcaggg 425 |||||||||| |||||| |||||||| || || ||||||||||| ||||||||||| || Sbjct: 25565 gccagcgccgacacgaaccccaccatcgccagccgcccgttgatccgctccggcgccggc 25506 Query: 426 ccgctgaacgccatcgcgtccca 448 ||||||||||||| | ||||||| Sbjct: 25505 ccgctgaacgccagcacgtccca 25483
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10 Length = 150379 Score = 165 bits (83), Expect = 2e-37 Identities = 263/323 (81%) Strand = Plus / Minus Query: 126 ggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagcatggcgaagcgg 185 |||| |||||||| || ||||||| ||||||||||||||| |||||||||||||| || Sbjct: 58343 ggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcatggcgaaccgc 58284 Query: 186 ccgttccagagctccgcgttggcgttcatgatggcgccggctctgccctcggcgctctcg 245 |||||||||||||| |||| |||| |||| | | ||||| || |||| ||| ||||| Sbjct: 58283 ccgttccagagctcggcgtcggcgctcatcacgccgccgctcctcgcctccgcggtctcg 58224 Query: 246 ccctgaagcaacggcaccagcgacgccatggacagcaccgccacggtgtaggcgaaccac 305 || | |||| |||||||||||||||| ||| ||||| || ||||| |||||||||| Sbjct: 58223 ccgcggagcagcggcaccagcgacgccgcggagagcacggcggcggtggcggcgaaccac 58164 Query: 306 gcctgtccggtgccgctgccgagctgcgagaggagcccgtcgccgcggcctgcctccacc 365 ||| | ||| | | ||||||| ||| ||||||||| ||||||| |||||||| Sbjct: 58163 gccagcccgctccagctgccggcctggtccaggagcccgccgccgcgcgacgcctccacg 58104 Query: 366 gccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctccggcgcaggg 425 |||||||||| |||||| |||||||| || || ||||||||||| ||||||||||| || Sbjct: 58103 gccagcgccgacacgaaccccaccatcgccagccgcccgttgatccgctccggcgccggc 58044 Query: 426 ccgctgaacgccatcgcgtccca 448 ||||||||||||| | ||||||| Sbjct: 58043 ccgctgaacgccagcacgtccca 58021
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 165 bits (83), Expect = 2e-37 Identities = 263/323 (81%) Strand = Plus / Minus Query: 126 ggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagcatggcgaagcgg 185 |||| |||||||| || ||||||| ||||||||||||||| |||||||||||||| || Sbjct: 8061692 ggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcatggcgaaccgc 8061633 Query: 186 ccgttccagagctccgcgttggcgttcatgatggcgccggctctgccctcggcgctctcg 245 |||||||||||||| |||| |||| |||| | | ||||| || |||| ||| ||||| Sbjct: 8061632 ccgttccagagctcggcgtcggcgctcatcacgccgccgctcctcgcctccgcggtctcg 8061573 Query: 246 ccctgaagcaacggcaccagcgacgccatggacagcaccgccacggtgtaggcgaaccac 305 || | |||| |||||||||||||||| ||| ||||| || ||||| |||||||||| Sbjct: 8061572 ccgcggagcagcggcaccagcgacgccgcggagagcacggcggcggtggcggcgaaccac 8061513 Query: 306 gcctgtccggtgccgctgccgagctgcgagaggagcccgtcgccgcggcctgcctccacc 365 ||| | ||| | | ||||||| ||| ||||||||| ||||||| |||||||| Sbjct: 8061512 gccagcccgctccagctgccggcctggtccaggagcccgccgccgcgcgacgcctccacg 8061453 Query: 366 gccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctccggcgcaggg 425 |||||||||| |||||| |||||||| || || ||||||||||| ||||||||||| || Sbjct: 8061452 gccagcgccgacacgaaccccaccatcgccagccgcccgttgatccgctccggcgccggc 8061393 Query: 426 ccgctgaacgccatcgcgtccca 448 ||||||||||||| | ||||||| Sbjct: 8061392 ccgctgaacgccagcacgtccca 8061370 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cctccaccgccagcgccgtc 377 |||||||||||||||||||| Sbjct: 10644102 cctccaccgccagcgccgtc 10644121
>dbj|AK062972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E06, full insert sequence Length = 942 Score = 165 bits (83), Expect = 2e-37 Identities = 263/323 (81%) Strand = Plus / Minus Query: 126 ggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagcatggcgaagcgg 185 |||| |||||||| || ||||||| ||||||||||||||| |||||||||||||| || Sbjct: 742 ggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcatggcgaaccgc 683 Query: 186 ccgttccagagctccgcgttggcgttcatgatggcgccggctctgccctcggcgctctcg 245 |||||||||||||| |||| |||| |||| | | ||||| || |||| ||| ||||| Sbjct: 682 ccgttccagagctcggcgtcggcgctcatcacgccgccgctcctcgcctccgcggtctcg 623 Query: 246 ccctgaagcaacggcaccagcgacgccatggacagcaccgccacggtgtaggcgaaccac 305 || | |||| |||||||||||||||| ||| ||||| || ||||| |||||||||| Sbjct: 622 ccgcggagcagcggcaccagcgacgccgcggagagcacggcggcggtggcggcgaaccac 563 Query: 306 gcctgtccggtgccgctgccgagctgcgagaggagcccgtcgccgcggcctgcctccacc 365 ||| | ||| | | ||||||| ||| ||||||||| ||||||| |||||||| Sbjct: 562 gccagcccgctccagctgccggcctggtccaggagcccgccgccgcgcgacgcctccacg 503 Query: 366 gccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctccggcgcaggg 425 |||||||||| |||||| |||||||| || || ||||||||||| ||||||||||| || Sbjct: 502 gccagcgccgacacgaaccccaccatcgccagccgcccgttgatccgctccggcgccggc 443 Query: 426 ccgctgaacgccatcgcgtccca 448 ||||||||||||| | ||||||| Sbjct: 442 ccgctgaacgccagcacgtccca 420
>gb|AY105095.1| Zea mays PCO131564 mRNA sequence Length = 907 Score = 157 bits (79), Expect = 5e-35 Identities = 151/175 (86%) Strand = Plus / Minus Query: 109 tctacacgttgatgaagggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtc 168 ||||| |||||||||| || |||||||||| | ||| ||| ||||||||||||||| | Sbjct: 276 tctacgcgttgatgaacggtgcgccggtgaggtactcagtgaaggcgagcgcgacgaggc 217 Query: 169 cgagcatggcgaagcggccgttccagagctccgcgttggcgttcatgatggcgccggctc 228 ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| | Sbjct: 216 cgagcatggcgaagcggccgttccagagctcggcgttggcgctcatgacggcgccgctcc 157 Query: 229 tgccctcggcgctctcgccctgaagcaacggcaccagcgacgccatggacagcac 283 || |||||||||| |||||| |||| |||||||||||| |||| ||||||||| Sbjct: 156 tggcctcggcgctgtcgcccctgagcagcggcaccagcgaggccacggacagcac 102
>emb|X15693.1|HVLP58 Barley mRNA for chloroplast high molecular mass early light-inducible protein (ELIP) (clone HV58) Length = 860 Score = 143 bits (72), Expect = 7e-31 Identities = 135/156 (86%) Strand = Plus / Minus Query: 116 gttgatgaagggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagcat 175 ||||| ||| |||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 772 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 713 Query: 176 ggcgaagcggccgttccagagctccgcgttggcgttcatgatggcgccggctctgccctc 235 ||||||||||||||||||||||| |||| |||| || |||| ||| || | ||| ||| Sbjct: 712 agcgaagcggccgttccagagctcggcgtcggcgctccagatgccgctggatttgctctc 653 Query: 236 ggcgctctcgccctgaagcaacggcaccagcgacgc 271 |||||| |||||| |||| ||||| ||||||||| Sbjct: 652 cacgctctggccctgcagcagcggcagcagcgacgc 617 Score = 97.6 bits (49), Expect = 4e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 368 cagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctccggcgcagggcc 427 |||||| | ||||||||| |||||||| || || |||||||||||||||||||| ||||| Sbjct: 517 cagcgcagccacgaagcctaccatggccagccggccgttgatgcgctccggcgccgggcc 458 Query: 428 gctgaacgccatcgcgtcccagatcgagg 456 ||||||||| | ||||||||||| ||||| Sbjct: 457 gctgaacgcgagcgcgtcccagaccgagg 429 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 496 cctcggtctgtgccctgacgacgagggtgcgtcggc 531 |||||||||| |||||||||||||||||||| |||| Sbjct: 194 cctcggtctgggccctgacgacgagggtgcgccggc 159
>gb|AF017357.1|AF017357 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 883 Score = 93.7 bits (47), Expect = 6e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 114 acgttgatgaagggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagc 173 ||||||| |||||| | |||||||| || ||||||| |||||| |||||||| |||||| Sbjct: 728 acgttgaggaagggagagccggtgaggaactcggtgaaggcgagggcgacgagcccgagc 669 Query: 174 atggcgaagcggccgttccagag 196 ||||||||||||||||||||||| Sbjct: 668 atggcgaagcggccgttccagag 646 Score = 58.0 bits (29), Expect = 3e-05 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 360 tccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctccggc 419 ||||| |||||||| | |||||| |||||||| || || ||||||||||| || |||||| Sbjct: 482 tccacggccagcgcggacacgaaccccaccatcgccagccgcccgttgatccgttccggc 423 Query: 420 gcagggccgctgaacgccatcgcgtccca 448 || || ||| ||||||||| | ||||||| Sbjct: 422 gccggcccg-tgaacgccagcacgtccca 395
>gb|AF017356.1|AF017356 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 818 Score = 93.7 bits (47), Expect = 6e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 114 acgttgatgaagggcgcgccggtgatgatctcggtggcggcgagcgcgacgagtccgagc 173 ||||||| |||||| | |||||||| || ||||||| |||||| |||||||| |||||| Sbjct: 663 acgttgaggaagggagagccggtgaggaactcggtgaaggcgagggcgacgagcccgagc 604 Query: 174 atggcgaagcggccgttccagag 196 ||||||||||||||||||||||| Sbjct: 603 atggcgaagcggccgttccagag 581 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 360 tccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctccggc 419 ||||| || ||||||| |||||| |||||||| || || ||||||||||| || |||||| Sbjct: 418 tccacggcgagcgccgacacgaaccccaccatcgccagccgcccgttgatccgttccggc 359 Query: 420 gcagggccgctgaacgccatcgcgtccca 448 || || ||| ||||||||| | ||||||| Sbjct: 358 gccggcccgttgaacgccagcacgtccca 330
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 79.8 bits (40), Expect = 9e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 357 gcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctcc 416 |||||||| || ||||||| |||||| |||||||| || || ||||||||||| ||||| Sbjct: 9470725 gcctccacggcgagcgccgacacgaaccccaccatcgccagccgcccgttgatcggctcc 9470784 Query: 417 ggcgcagggccgctgaacgccatcgcgtccca 448 ||||| || ||||||||||||| | ||||||| Sbjct: 9470785 ggcgccggcccgctgaacgccagcacgtccca 9470816
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 79.8 bits (40), Expect = 9e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 357 gcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctcc 416 |||||||| || ||||||| |||||| |||||||| || || ||||||||||| ||||| Sbjct: 84286 gcctccacggcgagcgccgacacgaaccccaccatcgccagccgcccgttgatcggctcc 84345 Query: 417 ggcgcagggccgctgaacgccatcgcgtccca 448 ||||| || ||||||||||||| | ||||||| Sbjct: 84346 ggcgccggcccgctgaacgccagcacgtccca 84377
>dbj|D85513.1| Oryza sativa (japonica cultivar-group) ELIP mRNA, partial sequence Length = 296 Score = 71.9 bits (36), Expect = 2e-09 Identities = 73/85 (85%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 131 gccggtgatgatctcggtggcggcgagcgcgacgagtccgagcatggcgaagcggcc-gt 189 |||||||| || ||||||| ||||||||||||||| |||||||||||||| || || || Sbjct: 121 gccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcatggcgaaccgnccngt 62 Query: 190 tccagagctccgcgttggcgttcat 214 |||||||||| | || |||| |||| Sbjct: 61 tccagagctcggngtcggcgntcat 37
>ref|XM_468708.1| Oryza sativa (japonica cultivar-group), mRNA Length = 669 Score = 63.9 bits (32), Expect = 5e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 357 gcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctcc 416 |||||||| || ||| ||| |||||| |||||||| || || ||||||||||| |||||| Sbjct: 341 gcctccacggcgagcaccggcacgaaccccaccatcgccagccgcccgttgatccgctcc 282 Query: 417 ggcgcagggccgctgaacgccatcgcgtccca 448 | || || ||||||||||||| | ||||||| Sbjct: 281 gttgccggcccgctgaacgccagcacgtccca 250
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 5e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 357 gcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctcc 416 |||||||| || ||| ||| |||||| |||||||| || || ||||||||||| |||||| Sbjct: 17148430 gcctccacggcgagcaccggcacgaaccccaccatcgccagccgcccgttgatccgctcc 17148489 Query: 417 ggcgcagggccgctgaacgccatcgcgtccca 448 | || || ||||||||||||| | ||||||| Sbjct: 17148490 gttgccggcccgctgaacgccagcacgtccca 17148521 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 gcgacgagtccgagcatggcgaagcggc 186 |||||||| |||||||||||| |||||| Sbjct: 6359946 gcgacgaggccgagcatggcgcagcggc 6359973
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete sequence Length = 153247 Score = 63.9 bits (32), Expect = 5e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 357 gcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctcc 416 |||||||| || ||| ||| |||||| |||||||| || || ||||||||||| |||||| Sbjct: 39823 gcctccacggcgagcaccggcacgaaccccaccatcgccagccgcccgttgatccgctcc 39882 Query: 417 ggcgcagggccgctgaacgccatcgcgtccca 448 | || || ||||||||||||| | ||||||| Sbjct: 39883 gttgccggcccgctgaacgccagcacgtccca 39914
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 5e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 357 gcctccaccgccagcgccgtcacgaagcccaccatggcaaggcgcccgttgatgcgctcc 416 |||||||| || ||| ||| |||||| |||||||| || || ||||||||||| |||||| Sbjct: 17141999 gcctccacggcgagcaccggcacgaaccccaccatcgccagccgcccgttgatccgctcc 17142058 Query: 417 ggcgcagggccgctgaacgccatcgcgtccca 448 | || || ||||||||||||| | ||||||| Sbjct: 17142059 gttgccggcccgctgaacgccagcacgtccca 17142090 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 gcgacgagtccgagcatggcgaagcggc 186 |||||||| |||||||||||| |||||| Sbjct: 6359159 gcgacgaggccgagcatggcgcagcggc 6359186
>emb|AJ242806.1|SST242806 Sporobolus stapfianus partial mRNA for putative early light-inducible protein (ELIP) Length = 246 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 144 tcggtggcggcgagcgcgacgagtccgagcatggcgaagcggccgttccagagctccgcg 203 |||||||| || |||||||||| || ||||||||| |||||||||||||||||| ||| Sbjct: 66 tcggtggctgcaagcgcgacgatcccaagcatggcggcgcggccgttccagagctcggcg 7 Query: 204 t 204 | Sbjct: 6 t 6
>emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08, complete sequence Length = 142814 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 378 acgaagcccaccatggcaaggcgcccgttgatgcgctccggcgcagggccgctgaacgcc 437 ||||| |||||||| || || |||| |||||| |||||||||| || |||||||||||| Sbjct: 137646 acgaaccccaccatcgccagccgcctgttgatcggctccggcgccggcccgctgaacgcc 137705 Query: 438 atcgcgtccca 448 | | ||||||| Sbjct: 137706 agcacgtccca 137716
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 378 acgaagcccaccatggcaaggcgcccgttgatgcgctccggcgcagggccgctgaacgcc 437 ||||| |||||||| || || |||| |||||| |||||||||| || |||||||||||| Sbjct: 11128991 acgaaccccaccatcgccagccgcctgttgatcggctccggcgccggcccgctgaacgcc 11129050 Query: 438 atcgcgtccca 448 | | ||||||| Sbjct: 11129051 agcacgtccca 11129061
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 259 gcaccagcgacgccatggacagcaccg 285 |||||||||||||||| |||||||||| Sbjct: 926709 gcaccagcgacgccatcgacagcaccg 926683
>ref|NM_210365.1| Eremothecium gossypii AER153Wp (AER153W), mRNA Length = 2247 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 259 gcaccagcgacgccatggacagcaccg 285 |||||||||||||||| |||||||||| Sbjct: 760 gcaccagcgacgccatcgacagcaccg 734
>dbj|AK070786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064M09, full insert sequence Length = 1258 Score = 44.1 bits (22), Expect = 0.48 Identities = 37/42 (88%) Strand = Plus / Minus Query: 359 ctccaccgccagcgccgtcacgaagcccaccatggcaaggcg 400 ||||||||||| ||||||| |||| |||||||||| ||||| Sbjct: 453 ctccaccgccaccgccgtcgcgaacgccaccatggcgaggcg 412
>ref|XM_482221.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1802 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 ccagcgacgccatggacagca 282 ||||||||||||||||||||| Sbjct: 590 ccagcgacgccatggacagca 570
>ref|XM_956517.1| Neurospora crassa OR74A hypothetical protein (NCU00998.1) partial mRNA Length = 3357 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 ctgcctccaccgccagcgccg 375 ||||||||||||||||||||| Sbjct: 3245 ctgcctccaccgccagcgccg 3225
>ref|XM_326490.1| Neurospora crassa OR74A hypothetical protein (NCU00998.1) partial mRNA Length = 3357 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 ctgcctccaccgccagcgccg 375 ||||||||||||||||||||| Sbjct: 3245 ctgcctccaccgccagcgccg 3225
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 ccggtgatgatctcggtggcg 152 ||||||||||||||||||||| Sbjct: 3187528 ccggtgatgatctcggtggcg 3187548
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 ccagcgacgccatggacagca 282 ||||||||||||||||||||| Sbjct: 18770287 ccagcgacgccatggacagca 18770267 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cggtggcggcgagcgcgacg 164 |||||||||||||||||||| Sbjct: 15922327 cggtggcggcgagcgcgacg 15922346
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 393 gcaaggcgcccgttgatgcgctccg 417 |||||||| |||||||||||||||| Sbjct: 947466 gcaaggcggccgttgatgcgctccg 947442
>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1123_G08 Length = 146944 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 ccagcgacgccatggacagca 282 ||||||||||||||||||||| Sbjct: 73736 ccagcgacgccatggacagca 73716
>dbj|AK069665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027H24, full insert sequence Length = 1802 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 ccagcgacgccatggacagca 282 ||||||||||||||||||||| Sbjct: 590 ccagcgacgccatggacagca 570
>ref|NM_183622.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 627 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cctccaccgccagcgccgtc 377 |||||||||||||||||||| Sbjct: 409 cctccaccgccagcgccgtc 390
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 cgccagcgccgtcacgaagc 384 |||||||||||||||||||| Sbjct: 3403851 cgccagcgccgtcacgaagc 3403870
>ref|XM_481844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 303 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cggtggcggcgagcgcgacg 164 |||||||||||||||||||| Sbjct: 50 cggtggcggcgagcgcgacg 69
>ref|XM_476698.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1902 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cgccatcgcgtcccagatcg 453 |||||||||||||||||||| Sbjct: 799 cgccatcgcgtcccagatcg 780
>ref|XM_506171.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1714_H10.127 mRNA Length = 1913 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cgccatcgcgtcccagatcg 453 |||||||||||||||||||| Sbjct: 811 cgccatcgcgtcccagatcg 792
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cctccaccgccagcgccgtc 377 |||||||||||||||||||| Sbjct: 235861 cctccaccgccagcgccgtc 235880
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cgagcatggcgaagcggccg 188 |||||||||||||||||||| Sbjct: 3084862 cgagcatggcgaagcggccg 3084843
>gb|AY502076.1| Rhodococcus sp. DK17 plasmid pDK3, partial sequence Length = 104578 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cggtgatgatctcggtggcg 152 |||||||||||||||||||| Sbjct: 70394 cggtgatgatctcggtggcg 70375
>ref|XM_542111.2| PREDICTED: Canis familiaris similar to neuropathy target esterase (LOC484993), mRNA Length = 4425 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 cgcggcctgcctccaccgcc 368 |||||||||||||||||||| Sbjct: 2272 cgcggcctgcctccaccgcc 2253
>ref|XM_541235.2| PREDICTED: Canis familiaris similar to C34E11.3 (LOC484118), mRNA Length = 3449 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 cgccggctctgccctcggcgctct 243 ||||||| |||||||||||||||| Sbjct: 979 cgccggcgctgccctcggcgctct 956
>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the HHEX gene for hematopoietically expressed homeobox, the 5' end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a eukaryotic translation initiation factor 2 subunit 2 (eIF-2-beta) pseudogene and four CpG islands, complete sequence Length = 190144 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 gtcgccgcggcctgcctccaccgc 367 |||| ||||||||||||||||||| Sbjct: 184456 gtcggcgcggcctgcctccaccgc 184479
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 ccaccgccagcgccgtcacg 380 |||||||||||||||||||| Sbjct: 1191974 ccaccgccagcgccgtcacg 1191993
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 159 gcgacgagtccgagcatggcgaagcggc 186 |||||||| |||||||||||| |||||| Sbjct: 40072 gcgacgaggccgagcatggcgcagcggc 40099
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ggtgatgatctcggtggcgg 153 |||||||||||||||||||| Sbjct: 1946852 ggtgatgatctcggtggcgg 1946871
>gb|AY113628.1| Drosophila melanogaster RH71315 full insert cDNA Length = 2311 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 cctccaccgccagcgccgtcacga 381 ||||||||||||||||||| |||| Sbjct: 257 cctccaccgccagcgccgtaacga 234
>gb|AF285058.1| Carex castanea internal transcribed spacer 1, complete sequence; 5.8S ribosomal RNA and internal transcribed spacer 2, complete sequence Length = 612 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 gaggagcccgtcgccgcggcctgc 358 ||||||| |||||||||||||||| Sbjct: 568 gaggagcacgtcgccgcggcctgc 591
>gb|AF027485.1| Carex arctata country Canada:Manitoba 5.8S ribosomal RNA gene, partial sequence; and internal transcribed spacer 2, complete sequence Length = 239 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 gaggagcccgtcgccgcggcctgc 358 ||||||| |||||||||||||||| Sbjct: 195 gaggagcacgtcgccgcggcctgc 218
>ref|NM_134689.1| Drosophila melanogaster CG2794-RA (CG2794), mRNA Length = 2310 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 cctccaccgccagcgccgtcacga 381 ||||||||||||||||||| |||| Sbjct: 265 cctccaccgccagcgccgtaacga 242
>gb|AY659972.1| Uncultured bacterium isolate DGGE band #5 putative UreC gene, partial cds Length = 303 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cgccggtgatgatctcggtg 149 |||||||||||||||||||| Sbjct: 34 cgccggtgatgatctcggtg 15
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 ggcggcgagcgcgacgagtccgag 172 ||||||| |||||||||||||||| Sbjct: 1831482 ggcggcgtgcgcgacgagtccgag 1831505
>gb|AC008002.3|AC008002 Drosophila melanogaster, chromosome 2L, region 21D-21E, BAC clone BACR48E08, complete sequence Length = 182726 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 cctccaccgccagcgccgtcacga 381 ||||||||||||||||||| |||| Sbjct: 92873 cctccaccgccagcgccgtaacga 92896
>dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0706B05 Length = 187835 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cctccaccgccagcgccgtc 377 |||||||||||||||||||| Sbjct: 138725 cctccaccgccagcgccgtc 138744
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tgatgatctcggtggcggcg 155 |||||||||||||||||||| Sbjct: 2806540 tgatgatctcggtggcggcg 2806559
>dbj|AP005512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012O03 Length = 141860 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cggtggcggcgagcgcgacg 164 |||||||||||||||||||| Sbjct: 102370 cggtggcggcgagcgcgacg 102389
>emb|Z18809.1|OSELIMR O.sensibilis mRNA for early light inducible protein (partial) Length = 774 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 367 ccagcgccgtcacgaagcccaccatggc 394 |||||||| |||||||||||||||||| Sbjct: 429 ccagcgcccacacgaagcccaccatggc 402
>dbj|AK098844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B24, full insert sequence Length = 1902 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cgccatcgcgtcccagatcg 453 |||||||||||||||||||| Sbjct: 799 cgccatcgcgtcccagatcg 780
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cgagcatggcgaagcggccg 188 |||||||||||||||||||| Sbjct: 2299567 cgagcatggcgaagcggccg 2299586 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tgcctccaccgccagcgccg 375 |||||||||||||||||||| Sbjct: 2084555 tgcctccaccgccagcgccg 2084536
>dbj|AK065047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I08, full insert sequence Length = 1915 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cgccatcgcgtcccagatcg 453 |||||||||||||||||||| Sbjct: 811 cgccatcgcgtcccagatcg 792
>gb|AY111120.1| Zea mays CL23394_1 mRNA sequence Length = 644 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ctgaagcaacggcaccagcg 267 |||||||||||||||||||| Sbjct: 340 ctgaagcaacggcaccagcg 321
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cgccatcgcgtcccagatcg 453 |||||||||||||||||||| Sbjct: 100979 cgccatcgcgtcccagatcg 100960
>gb|AE003589.4| Drosophila melanogaster chromosome 2L, section 2 of 83 of the complete sequence Length = 306076 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 cctccaccgccagcgccgtcacga 381 ||||||||||||||||||| |||| Sbjct: 258594 cctccaccgccagcgccgtaacga 258571
>gb|AC004573.1|AC004573 Drosophila melanogaster, chromosome 2L, region 21C5-21D1, P1 clone DS07610, complete sequence Length = 85095 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 cctccaccgccagcgccgtcacga 381 ||||||||||||||||||| |||| Sbjct: 24024 cctccaccgccagcgccgtaacga 24001
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 ggcggcgagcgcgacgagtccgag 172 ||||||| |||||||||||||||| Sbjct: 2749215 ggcggcgtgcgcgacgagtccgag 2749192 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,956,138 Number of Sequences: 3902068 Number of extensions: 2956138 Number of successful extensions: 64045 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62196 Number of HSP's gapped (non-prelim): 1835 length of query: 549 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 526 effective length of database: 17,143,297,704 effective search space: 9017374592304 effective search space used: 9017374592304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
