ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4i21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472925.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 378 Score = 456 bits (230), Expect = e-125 Identities = 257/266 (96%) Strand = Plus / Minus Query: 181 aggacttgtcgaggaggctgtcgaggtagaggttgaggatgtatctgccggtggagagga 240 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 376 aggacttgtcgaggaggccgtcgaggtagaggttgaggaggtatctgccggtggagagga 317 Query: 241 cgtcgaggcgcttctcgctcggctcgtaccgccccttgcgcagctggtaccggtgcgtca 300 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 316 cgtcgaggcgcttctcgctgggctcgtagcgccccttgcgcagctggtaccggtgcgtca 257 Query: 301 ccgccgacaccgtgtacgcctgcccttcgatcgtcacgctctccccgcagtggatgttcg 360 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 256 ccgcagacaccgtgtacgcctgcccttcgatcgtcacgctctccccgcagtggatgttgg 197 Query: 361 tgggaaagcagcggacgccgaggcaccgcggcggcggcgtgatctcgacgaccttgaagg 420 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 196 tggggaagcagcggacgccgaggcaccgcggcggcggcgtgatctcgacgaccttgaacg 137 Query: 421 ggtgcttgtgctccttctcccgctcc 446 ||| |||||||||||||||||||||| Sbjct: 136 ggtacttgtgctccttctcccgctcc 111 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 450 tccctgtcccggtccttcttcctgcacagcaccgacaaacgcggcttgtggtag 503 |||| |||||||||||||||||||||| ||||| || ||||||||||||||| Sbjct: 92 tcccggtcccggtccttcttcctgcactccaccgcgaatcgcggcttgtggtag 39
>dbj|AK100146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013P08, full insert sequence Length = 741 Score = 456 bits (230), Expect = e-125 Identities = 257/266 (96%) Strand = Plus / Minus Query: 181 aggacttgtcgaggaggctgtcgaggtagaggttgaggatgtatctgccggtggagagga 240 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 519 aggacttgtcgaggaggccgtcgaggtagaggttgaggaggtatctgccggtggagagga 460 Query: 241 cgtcgaggcgcttctcgctcggctcgtaccgccccttgcgcagctggtaccggtgcgtca 300 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 459 cgtcgaggcgcttctcgctgggctcgtagcgccccttgcgcagctggtaccggtgcgtca 400 Query: 301 ccgccgacaccgtgtacgcctgcccttcgatcgtcacgctctccccgcagtggatgttcg 360 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 399 ccgcagacaccgtgtacgcctgcccttcgatcgtcacgctctccccgcagtggatgttgg 340 Query: 361 tgggaaagcagcggacgccgaggcaccgcggcggcggcgtgatctcgacgaccttgaagg 420 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 339 tggggaagcagcggacgccgaggcaccgcggcggcggcgtgatctcgacgaccttgaacg 280 Query: 421 ggtgcttgtgctccttctcccgctcc 446 ||| |||||||||||||||||||||| Sbjct: 279 ggtacttgtgctccttctcccgctcc 254 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 450 tccctgtcccggtccttcttcctgcacagcaccgacaaacgcggcttgtggtag 503 |||| |||||||||||||||||||||| ||||| || ||||||||||||||| Sbjct: 235 tcccggtcccggtccttcttcctgcactccaccgcgaatcgcggcttgtggtag 182
>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15, complete sequence Length = 150864 Score = 315 bits (159), Expect = 8e-83 Identities = 174/179 (97%) Strand = Plus / Plus Query: 181 aggacttgtcgaggaggctgtcgaggtagaggttgaggatgtatctgccggtggagagga 240 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 4051 aggacttgtcgaggaggccgtcgaggtagaggttgaggaggtatctgccggtggagagga 4110 Query: 241 cgtcgaggcgcttctcgctcggctcgtaccgccccttgcgcagctggtaccggtgcgtca 300 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 4111 cgtcgaggcgcttctcgctgggctcgtagcgccccttgcgcagctggtaccggtgcgtca 4170 Query: 301 ccgccgacaccgtgtacgcctgcccttcgatcgtcacgctctccccgcagtggatgttc 359 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4171 ccgcagacaccgtgtacgcctgcccttcgatcgtcacgctctccccgcagtggatgttc 4229 Score = 149 bits (75), Expect = 1e-32 Identities = 84/87 (96%) Strand = Plus / Plus Query: 360 gtgggaaagcagcggacgccgaggcaccgcggcggcggcgtgatctcgacgaccttgaag 419 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6436 gtggggaagcagcggacgccgaggcaccgcggcggcggcgtgatctcgacgaccttgaac 6495 Query: 420 gggtgcttgtgctccttctcccgctcc 446 |||| |||||||||||||||||||||| Sbjct: 6496 gggtacttgtgctccttctcccgctcc 6522 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 450 tccctgtcccggtccttcttcctgcac 476 |||| |||||||||||||||||||||| Sbjct: 6541 tcccggtcccggtccttcttcctgcac 6567
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 315 bits (159), Expect = 8e-83 Identities = 174/179 (97%) Strand = Plus / Plus Query: 181 aggacttgtcgaggaggctgtcgaggtagaggttgaggatgtatctgccggtggagagga 240 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 111805 aggacttgtcgaggaggccgtcgaggtagaggttgaggaggtatctgccggtggagagga 111864 Query: 241 cgtcgaggcgcttctcgctcggctcgtaccgccccttgcgcagctggtaccggtgcgtca 300 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 111865 cgtcgaggcgcttctcgctgggctcgtagcgccccttgcgcagctggtaccggtgcgtca 111924 Query: 301 ccgccgacaccgtgtacgcctgcccttcgatcgtcacgctctccccgcagtggatgttc 359 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111925 ccgcagacaccgtgtacgcctgcccttcgatcgtcacgctctccccgcagtggatgttc 111983 Score = 149 bits (75), Expect = 1e-32 Identities = 84/87 (96%) Strand = Plus / Plus Query: 360 gtgggaaagcagcggacgccgaggcaccgcggcggcggcgtgatctcgacgaccttgaag 419 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 114190 gtggggaagcagcggacgccgaggcaccgcggcggcggcgtgatctcgacgaccttgaac 114249 Query: 420 gggtgcttgtgctccttctcccgctcc 446 |||| |||||||||||||||||||||| Sbjct: 114250 gggtacttgtgctccttctcccgctcc 114276 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 450 tccctgtcccggtccttcttcctgcac 476 |||| |||||||||||||||||||||| Sbjct: 114295 tcccggtcccggtccttcttcctgcac 114321
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 315 bits (159), Expect = 8e-83 Identities = 174/179 (97%) Strand = Plus / Plus Query: 181 aggacttgtcgaggaggctgtcgaggtagaggttgaggatgtatctgccggtggagagga 240 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 24114826 aggacttgtcgaggaggccgtcgaggtagaggttgaggaggtatctgccggtggagagga 24114885 Query: 241 cgtcgaggcgcttctcgctcggctcgtaccgccccttgcgcagctggtaccggtgcgtca 300 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 24114886 cgtcgaggcgcttctcgctgggctcgtagcgccccttgcgcagctggtaccggtgcgtca 24114945 Query: 301 ccgccgacaccgtgtacgcctgcccttcgatcgtcacgctctccccgcagtggatgttc 359 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24114946 ccgcagacaccgtgtacgcctgcccttcgatcgtcacgctctccccgcagtggatgttc 24115004 Score = 149 bits (75), Expect = 1e-32 Identities = 84/87 (96%) Strand = Plus / Plus Query: 360 gtgggaaagcagcggacgccgaggcaccgcggcggcggcgtgatctcgacgaccttgaag 419 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24117211 gtggggaagcagcggacgccgaggcaccgcggcggcggcgtgatctcgacgaccttgaac 24117270 Query: 420 gggtgcttgtgctccttctcccgctcc 446 |||| |||||||||||||||||||||| Sbjct: 24117271 gggtacttgtgctccttctcccgctcc 24117297 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 450 tccctgtcccggtccttcttcctgcac 476 |||| |||||||||||||||||||||| Sbjct: 24117316 tcccggtcccggtccttcttcctgcac 24117342
>emb|AL954167.4| Mouse DNA sequence from clone RP23-300M3 on chromosome 11 Contains a zinc finger protein pseudogene, complete sequence Length = 190351 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 56 tactttttgctgtgtaagcattt 78 ||||||||||||||||||||||| Sbjct: 113750 tactttttgctgtgtaagcattt 113728
>dbj|AB025570.1| Equus caballus CgA mRNA for chromogranin A, complete cds Length = 1828 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 429 tgctccttctcccgctccagctccctg 455 |||||||||||| |||||||||||||| Sbjct: 1037 tgctccttctcctgctccagctccctg 1011
>gb|AC138766.20| Mus musculus chromosome 5, clone RP23-444J3, complete sequence Length = 206494 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 460 ggtccttcttcctgcacagca 480 ||||||||||||||||||||| Sbjct: 196219 ggtccttcttcctgcacagca 196199
>ref|XM_757900.1| Theileria parva strain Muguga chromosome 3 hypothetical protein (TP03_0868) partial mRNA Length = 1564 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 ggtagaggttgaggatgtatc 225 ||||||||||||||||||||| Sbjct: 422 ggtagaggttgaggatgtatc 402
>gb|AC040904.4| Homo sapiens chromosome 17, clone RP11-619I22, complete sequence Length = 173651 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 51 gcatgtactttttgctgtgtaagcatttt 79 |||||||||| ||||||||||| |||||| Sbjct: 107807 gcatgtacttcttgctgtgtaaacatttt 107835
>ref|XM_691034.1| PREDICTED: Danio rerio similar to Kinesin-like protein KIF3B (Microtubule plus end-directed kinesin motor 3B) (LOC567733), mRNA Length = 1425 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 ctccttctcccgctccagctc 451 ||||||||||||||||||||| Sbjct: 1287 ctccttctcccgctccagctc 1267
>gb|AC158627.6| Mus musculus 10 BAC RP23-451N6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183225 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tgtgtaagcatttttatatca 86 ||||||||||||||||||||| Sbjct: 34906 tgtgtaagcatttttatatca 34926
>gb|AF260753.1|AF260753 Cricetulus griseus plectin mRNA, partial cds Length = 14618 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 431 ctccttctcccgctccagctc 451 ||||||||||||||||||||| Sbjct: 7158 ctccttctcccgctccagctc 7138
>gb|AY108116.1| Zea mays PCO074348 mRNA sequence Length = 1955 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 404 ctcgacgaccttgaaggggtgcttg 428 |||||||||| |||||||||||||| Sbjct: 215 ctcgacgaccatgaaggggtgcttg 191
>gb|AY739285.1| Zea mays protein disulfide isomerase (PDIL1-2) mRNA, complete cds Length = 1905 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 404 ctcgacgaccttgaaggggtgcttg 428 |||||||||| |||||||||||||| Sbjct: 192 ctcgacgaccatgaaggggtgcttg 168
>gb|AY739284.1| Zea mays protein disulfide isomerase (PDIL1-1) mRNA, complete cds Length = 1918 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 404 ctcgacgaccttgaaggggtgcttg 428 |||||||||| |||||||||||||| Sbjct: 212 ctcgacgaccatgaaggggtgcttg 188
>gb|L39014.1|MZEPDI Zea mays protein disulfide isomerase (pdi) mRNA, complete cds Length = 1823 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 404 ctcgacgaccttgaaggggtgcttg 428 |||||||||| |||||||||||||| Sbjct: 207 ctcgacgaccatgaaggggtgcttg 183
>gb|AC153540.4| Mus musculus 10 BAC RP23-356N9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198205 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tgtgtaagcatttttatatca 86 ||||||||||||||||||||| Sbjct: 100099 tgtgtaagcatttttatatca 100079
>ref|NM_188072.1| Oryza sativa (japonica cultivar-group), Ozsa8492 predicted mRNA Length = 1281 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 227 gccggtggagaggacgtcgaggcg 250 ||||||||||||| |||||||||| Sbjct: 432 gccggtggagaggtcgtcgaggcg 409
>ref|XM_511732.1| PREDICTED: Pan troglodytes similar to KIAA1118 protein (LOC454954), mRNA Length = 4221 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 ctccttctcccgctccagct 450 |||||||||||||||||||| Sbjct: 2595 ctccttctcccgctccagct 2576
>ref|XM_370461.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06958.4) partial mRNA Length = 1956 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 tctcgacgaccttgaagggg 422 |||||||||||||||||||| Sbjct: 283 tctcgacgaccttgaagggg 264
>ref|XM_419221.1| PREDICTED: Gallus gallus similar to carbonic anhydrase VIII; CA-related protein; carbonic anhydrase-related protein; carbonic anhydrase-like sequence; carbonate dehydratase (LOC421139), partial mRNA Length = 1924 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 acgccgaggcaccgcggcgg 394 |||||||||||||||||||| Sbjct: 768 acgccgaggcaccgcggcgg 787
>gb|BC012130.1| Homo sapiens 5-azacytidine induced 1, mRNA (cDNA clone IMAGE:4634709), with apparent retained intron Length = 4117 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 ctccttctcccgctccagct 450 |||||||||||||||||||| Sbjct: 2936 ctccttctcccgctccagct 2917
>gb|BC011615.2| Homo sapiens 5-azacytidine induced 1, mRNA (cDNA clone IMAGE:3945607), partial cds Length = 2411 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 ctccttctcccgctccagct 450 |||||||||||||||||||| Sbjct: 1262 ctccttctcccgctccagct 1243
>gb|BC010413.2| Homo sapiens 5-azacytidine induced 1, mRNA (cDNA clone IMAGE:3841026), partial cds Length = 1178 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 ctccttctcccgctccagct 450 |||||||||||||||||||| Sbjct: 65 ctccttctcccgctccagct 46
>ref|NM_014984.1| Homo sapiens 5-azacytidine induced 1 (AZI1), transcript variant 1, mRNA Length = 3637 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 ctccttctcccgctccagct 450 |||||||||||||||||||| Sbjct: 2483 ctccttctcccgctccagct 2464
>ref|NM_001009811.1| Homo sapiens 5-azacytidine induced 1 (AZI1), transcript variant 2, mRNA Length = 3529 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 ctccttctcccgctccagct 450 |||||||||||||||||||| Sbjct: 2483 ctccttctcccgctccagct 2464
>ref|XM_653952.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1440.2), mRNA Length = 5619 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cttctcccgctccagctccc 453 |||||||||||||||||||| Sbjct: 3798 cttctcccgctccagctccc 3779
>gb|AC126679.2| Mus musculus BAC clone RP24-319J7 from chromosome 19, complete sequence Length = 172299 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 ccttctcccgctccagctcc 452 |||||||||||||||||||| Sbjct: 4996 ccttctcccgctccagctcc 5015
>gb|AC127264.4| Mus musculus BAC clone RP24-336J13 from chromosome 19, complete sequence Length = 169256 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 ccttctcccgctccagctcc 452 |||||||||||||||||||| Sbjct: 104197 ccttctcccgctccagctcc 104216
>gb|AC123807.4| Mus musculus BAC clone RP24-157J13 from chromosome 13, complete sequence Length = 187710 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 agaggttgaggatgtatctg 227 |||||||||||||||||||| Sbjct: 91250 agaggttgaggatgtatctg 91231
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 cttcgatcgtcacgctctcc 344 |||||||||||||||||||| Sbjct: 1633059 cttcgatcgtcacgctctcc 1633040
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 cttcgatcgtcacgctctcc 344 |||||||||||||||||||| Sbjct: 1509693 cttcgatcgtcacgctctcc 1509674
>ref|XM_791708.1| PREDICTED: Strongylocentrotus purpuratus similar to CENP-F kinetochore protein (Centromere protein F) (Mitosin) (AH antigen) (LOC592172), mRNA Length = 10911 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 tgcttgtgctccttctcccg 442 |||||||||||||||||||| Sbjct: 1184 tgcttgtgctccttctcccg 1165
>emb|AL139135.15| Human DNA sequence from clone RP11-463J7 on chromosome 1q31.1-31.3 Contains a coronin actin binding protein 1C (CORO1C) pseudogene, the 3' end of a novel gene and a glycine cleavage system protein H (aminomethyl carrier) (GCSH) pseudogene, complete sequence Length = 165919 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tttttgctgtgtaagcattt 78 |||||||||||||||||||| Sbjct: 60303 tttttgctgtgtaagcattt 60284
>gb|AC011496.7| Homo sapiens chromosome 19 clone CTB-3M11, complete sequence Length = 98069 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gaggcaccgcggcggcggcg 399 |||||||||||||||||||| Sbjct: 96073 gaggcaccgcggcggcggcg 96092
>dbj|AB029041.1| Homo sapiens mRNA for KIAA1118 protein, partial cds Length = 3673 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 ctccttctcccgctccagct 450 |||||||||||||||||||| Sbjct: 2540 ctccttctcccgctccagct 2521
>gb|AC118344.2| Homo sapiens chromosome 19 clone CTC-425O23, complete sequence Length = 178335 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 gaggcaccgcggcggcggcg 399 |||||||||||||||||||| Sbjct: 177056 gaggcaccgcggcggcggcg 177037
>ref|NM_136253.2| Drosophila melanogaster Sensitized chromosome inheritance modifier 19 CG9241-RA (Mcm10), mRNA Length = 2793 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 405 tcgacgaccttgaaggggtgcttgtgctcctt 436 ||||| ||||| ||||||||||| |||||||| Sbjct: 2180 tcgaccacctttaaggggtgcttctgctcctt 2149
>gb|AY061477.1| Drosophila melanogaster LD44370 full length cDNA Length = 1065 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 405 tcgacgaccttgaaggggtgcttgtgctcctt 436 ||||| ||||| ||||||||||| |||||||| Sbjct: 429 tcgaccacctttaaggggtgcttctgctcctt 398
>gb|AF320254.1|AF320254 Azoarcus evansii aerobic 2-aminobenzoate metabolism type II operon, complete sequence Length = 11010 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 412 ccttgaaggggtgcttgtgctcct 435 ||||||||||||||||||| |||| Sbjct: 3853 ccttgaaggggtgcttgtggtcct 3830
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 ttgtcgaggaggctgtcgaggtag 209 |||||||||| ||||||||||||| Sbjct: 1359624 ttgtcgaggatgctgtcgaggtag 1359647
>gb|AC093099.1| Drosophila melanogaster, chromosome 2L, region 39A-39D, BAC clone BACR34H23, complete sequence Length = 163475 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 405 tcgacgaccttgaaggggtgcttgtgctcctt 436 ||||| ||||| ||||||||||| |||||||| Sbjct: 21502 tcgaccacctttaaggggtgcttctgctcctt 21471
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 gccggtggagaggacgtcgaggcg 250 ||||||||||||| |||||||||| Sbjct: 9434401 gccggtggagaggtcgtcgaggcg 9434424
>gb|AC010995.11|AC010995 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone BACR30C16, complete sequence Length = 185810 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 ctttttgctgtgtaagcattttta 81 ||||||||||||| |||||||||| Sbjct: 185299 ctttttgctgtgtgagcattttta 185276
>gb|AC011069.7|AC011069 Drosophila melanogaster, chromosome X, region 12B-12C, BAC clone BACR11H20, complete sequence Length = 168384 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 ctttttgctgtgtaagcattttta 81 ||||||||||||| |||||||||| Sbjct: 23486 ctttttgctgtgtgagcattttta 23463
>gb|AC027601.25| Homo sapiens chromosome 17, clone RP11-455O6, complete sequence Length = 192732 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 ctccttctcccgctccagct 450 |||||||||||||||||||| Sbjct: 41334 ctccttctcccgctccagct 41353
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gcaccgcggcggcggcgtga 402 |||||||||||||||||||| Sbjct: 1093308 gcaccgcggcggcggcgtga 1093289
>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0693B08 Length = 140812 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 227 gccggtggagaggacgtcgaggcg 250 ||||||||||||| |||||||||| Sbjct: 104728 gccggtggagaggtcgtcgaggcg 104751
>gb|AE005111.1| Halobacterium sp. NRC-1 section 142 of 170 of the complete genome Length = 11925 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gtgcgtcaccgccgacaccg 312 |||||||||||||||||||| Sbjct: 3821 gtgcgtcaccgccgacaccg 3802
>gb|AF153317.1|AF153317 Shigella dysenteriae SapF (sapF) gene, partial cds; SapD (sapD), SapC (sapC), complete cds; defective prophage genes; insertion sequence IS911 InsB (insB) and InsA (insA), insertion sequence IS1 InsA (insA) and InsB (insB), YcjW (ycjW), YcjX (ycjX), YcjF (ycjF), TyrR (tyrR), thiol peroxidase (tpx), YcjG (ycjG), YcjI (ycjI), insertion sequence iso-IS1 InsB (insB) and InsA (insA), Fnr (fnr), Ogt (ogt), insertion sequence iso-IS1 InsA (insA) and InsB, insertion sequence IS600 InsA (insA) and InsB (insB) genes, complete cds; hypothetical protein b1342 gene, partial cds; and unknown gene Length = 32094 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 cttcgatcgtcacgctctcc 344 |||||||||||||||||||| Sbjct: 23446 cttcgatcgtcacgctctcc 23427
>ref|NM_212066.1| Eremothecium gossypii AGR338Cp (AGR338C), mRNA Length = 2478 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 ttgtcgaggaggctgtcgaggtag 209 |||||||||| ||||||||||||| Sbjct: 2213 ttgtcgaggatgctgtcgaggtag 2190
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.8 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 393 ggcggcgtg-atctcgacgaccttgaag 419 ||||||||| |||||||||||||||||| Sbjct: 1296913 ggcggcgtggatctcgacgaccttgaag 1296886
>gb|AF071417.1|AF071417 Drosophila melanogaster phosphatidylinositol 4-phosphate 5-kinase (sktl) mRNA, complete cds Length = 2922 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 425 cttgtgctccttctcccgctccagctcc 452 ||||||||||| |||| ||||||||||| Sbjct: 484 cttgtgctcctgctcctgctccagctcc 457
>gb|AE003669.5| Drosophila melanogaster chromosome 2L, section 78 of 83 of the complete sequence Length = 273993 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 405 tcgacgaccttgaaggggtgcttgtgctcctt 436 ||||| ||||| ||||||||||| |||||||| Sbjct: 171840 tcgaccacctttaaggggtgcttctgctcctt 171809
>gb|AC006574.1|AC006574 Drosophila melanogaster, chromosome 2R, region 39A3-39B1, P1 clones DS02919 and DS05130, complete sequence Length = 127035 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 405 tcgacgaccttgaaggggtgcttgtgctcctt 436 ||||| ||||| ||||||||||| |||||||| Sbjct: 99347 tcgaccacctttaaggggtgcttctgctcctt 99316
>gb|AE003493.3| Drosophila melanogaster chromosome X, section 45 of 74 of the complete sequence Length = 307761 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 ctttttgctgtgtaagcattttta 81 ||||||||||||| |||||||||| Sbjct: 138006 ctttttgctgtgtgagcattttta 137983
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 gcggcgtgatctcgacgacc 413 |||||||||||||||||||| Sbjct: 116793 gcggcgtgatctcgacgacc 116812
>emb|BX072579.14| Human DNA sequence from clone RP11-199F6 on chromosome 13 Contains the GAS6 gene for growth arrest-specific 6, six novel genes and ten CpG islands, complete sequence Length = 170020 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gaaggggtgcttgtgctcct 435 |||||||||||||||||||| Sbjct: 24617 gaaggggtgcttgtgctcct 24636
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 cttcgatcgtcacgctctcc 344 |||||||||||||||||||| Sbjct: 1297691 cttcgatcgtcacgctctcc 1297672
>emb|AL669932.14| Mouse DNA sequence from clone RP23-430P1 on chromosome 2, complete sequence Length = 148257 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ctgtgtaagcatttttatat 84 |||||||||||||||||||| Sbjct: 24345 ctgtgtaagcatttttatat 24326 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,605,178 Number of Sequences: 3902068 Number of extensions: 3605178 Number of successful extensions: 84709 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 84049 Number of HSP's gapped (non-prelim): 661 length of query: 504 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 482 effective length of database: 17,147,199,772 effective search space: 8264950290104 effective search space used: 8264950290104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
