>SYN_THEAC (Q9HKS7) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 429

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +1

Query: 70  RRSRGYELTIESTHVYQYHGQSILAILFDSREAFQAENTISGRYVLVSQQFTHLRKFRS 246
           R   GYE+ ++S  VYQ +   +  I  D  E F  +N       L S++FT + K RS
Sbjct: 81  RSPSGYEIAVDSFRVYQKN--DVFPITKDQGEEFLLDNR---HLWLRSREFTSVLKIRS 134

>LPQT_MYCTU (P96384) Putative lipoprotein lpqT precursor|
          Length = 226

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
 Frame = -2

Query: 214 G*RVHTYRRWCFPPEMPP*SQREL---------QECSAHDTDIHALI 101
           G R+HT+ R  FP   PP  QR L          E   H +DI A+I
Sbjct: 172 GRRLHTWNRIVFPTGAPPAKQRYLVQLTITSLANEAVKHASDIEAII 218

>ABCA_AERSA (Q07698) ABC transporter protein abcA|
          Length = 308

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 219 LLADEYIPTGDGVFRLKCLPRVKENCKNALPMILI 115
           L+ DE +  GD  F+ KC  R+K+     + ++L+
Sbjct: 167 LIIDEALAVGDDAFQRKCYARLKQLQSQGVTILLV 201

>AMPR_YEREN (P45461) HTH-type transcriptional activator ampR|
          Length = 294

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = +1

Query: 22  RGTEHRGNCDSNRLFFRRSRGYELTIESTHVYQYHGQSILAILFDS 159
           +  E R NC   RLF R SRG  LT E        G+++L IL DS
Sbjct: 42  KALEQRLNC---RLFIRISRGLVLTTE--------GENLLPILNDS 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,366,155
Number of Sequences: 219361
Number of extensions: 564644
Number of successful extensions: 1470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)