ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL121585.22|HSBA504H3 Human DNA sequence from clone RP11-504... 44 0.22
2gb|AC091722.3| Sus scrofa clone RP44-304F21, complete sequence 42 0.86
3emb|BX000364.6| Zebrafish DNA sequence from clone DKEY-11K1 in l... 42 0.86
4gb|AC185139.2| Pan troglodytes BAC clone CH251-174C16 from chrom... 40 3.4
5gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome 40 3.4
6gb|AC124687.4| Mus musculus BAC clone RP24-447D15 from chromosom... 40 3.4
7gb|AC122316.3| Mus musculus BAC clone RP23-303G23 from 1, comple... 40 3.4
8gb|AC158931.4| Mus musculus chromosome 1, clone RP23-3H19, compl... 40 3.4
9gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 geno... 40 3.4
10gb|AC069542.7| Homo sapiens chromosome 10 clone RP11-390B4, comp... 40 3.4
11gb|AC099727.13| Mus musculus chromosome 1, clone RP23-353O3, com... 40 3.4
12gb|AC093827.3| Homo sapiens BAC clone RP11-397E7 from 4, complet... 40 3.4
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
15gb|AC097462.2| Homo sapiens BAC clone RP11-18O11 from 4, complet... 40 3.4
16gb|AC104651.2| Homo sapiens BAC clone RP11-217P16 from 2, comple... 40 3.4
17gb|AC016595.4| Homo sapiens chromosome 5 clone CTD-2012M11, comp... 40 3.4
18dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
19gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4

>emb|AL121585.22|HSBA504H3 Human DNA sequence from clone RP11-504H3 on chromosome 20 Contains gene
             SNX5 for sorting nexin 5, the C20orf72 gene, the PTMAP3
             gene for PTMA (prothymosin, alpha) pseudogene 3, the 3'
             end of the ZNF339 gene for zinc finger protein 339 and two
             CpG islands, complete sequence
          Length = 139953

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 153   tgactctagggaggcatttcag 174
             ||||||||||||||||||||||
Sbjct: 40207 tgactctagggaggcatttcag 40228



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>gb|AC091722.3| Sus scrofa clone RP44-304F21, complete sequence
          Length = 165604

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     cagagcacagaggaaattgtg 49
              |||||||||||||||||||||
Sbjct: 116224 cagagcacagaggaaattgtg 116204



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>emb|BX000364.6| Zebrafish DNA sequence from clone DKEY-11K1 in linkage group 17, complete
              sequence
          Length = 189563

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 228    tctcagaaaattcagaagcct 248
              |||||||||||||||||||||
Sbjct: 109048 tctcagaaaattcagaagcct 109028



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>gb|AC185139.2| Pan troglodytes BAC clone CH251-174C16 from chromosome 2, complete
              sequence
          Length = 166804

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    cagtatcatgggcagagcat 137
              ||||||||||||||||||||
Sbjct: 161611 cagtatcatgggcagagcat 161592



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>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome
          Length = 920079

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    tcttgcaattctctttgact 157
              ||||||||||||||||||||
Sbjct: 520910 tcttgcaattctctttgact 520929



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>gb|AC124687.4| Mus musculus BAC clone RP24-447D15 from chromosome 13, complete
             sequence
          Length = 176871

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    acaaggggaacagagcacag 38
             ||||||||||||||||||||
Sbjct: 80535 acaaggggaacagagcacag 80516



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>gb|AC122316.3| Mus musculus BAC clone RP23-303G23 from 1, complete sequence
          Length = 171213

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     gaaattgtgattctaacaga 60
              ||||||||||||||||||||
Sbjct: 170165 gaaattgtgattctaacaga 170184



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>gb|AC158931.4| Mus musculus chromosome 1, clone RP23-3H19, complete sequence
          Length = 212994

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 219   attcactcatctcagaaaattcag 242
             ||||||||||||| ||||||||||
Sbjct: 68169 attcactcatctctgaaaattcag 68192



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>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete
              sequence
          Length = 178692

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    attcactcatctcagaaaat 238
              ||||||||||||||||||||
Sbjct: 132490 attcactcatctcagaaaat 132509



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>gb|AC069542.7| Homo sapiens chromosome 10 clone RP11-390B4, complete sequence
          Length = 166509

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   gcattcttgcaattctcttt 153
             ||||||||||||||||||||
Sbjct: 63368 gcattcttgcaattctcttt 63387



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>gb|AC099727.13| Mus musculus chromosome 1, clone RP23-353O3, complete sequence
          Length = 222408

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     gaaattgtgattctaacaga 60
              ||||||||||||||||||||
Sbjct: 143056 gaaattgtgattctaacaga 143075



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>gb|AC093827.3| Homo sapiens BAC clone RP11-397E7 from 4, complete sequence
          Length = 192263

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    tctctttgactctagggagg 166
              ||||||||||||||||||||
Sbjct: 164272 tctctttgactctagggagg 164291



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 219      attcactcatctcagaaaat 238
                ||||||||||||||||||||
Sbjct: 17542141 attcactcatctcagaaaat 17542122



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 145      attctctttgactctagggaggca 168
                |||||||| |||||||||||||||
Sbjct: 21487368 attctcttcgactctagggaggca 21487345



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>gb|AC097462.2| Homo sapiens BAC clone RP11-18O11 from 4, complete sequence
          Length = 180973

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     aacagagcacagaggaaatt 46
              ||||||||||||||||||||
Sbjct: 176923 aacagagcacagaggaaatt 176904



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>gb|AC104651.2| Homo sapiens BAC clone RP11-217P16 from 2, complete sequence
          Length = 106954

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   cagtatcatgggcagagcat 137
             ||||||||||||||||||||
Sbjct: 86031 cagtatcatgggcagagcat 86012



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>gb|AC016595.4| Homo sapiens chromosome 5 clone CTD-2012M11, complete sequence
          Length = 131484

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 224   ctcatctcagaaaattcagaagcc 247
             |||||||||| |||||||||||||
Sbjct: 61200 ctcatctcaggaaattcagaagcc 61177



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>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020C11
          Length = 163328

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 145   attctctttgactctagggaggca 168
             |||||||| |||||||||||||||
Sbjct: 82295 attctcttcgactctagggaggca 82272



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 219      attcactcatctcagaaaat 238
                ||||||||||||||||||||
Sbjct: 17551181 attcactcatctcagaaaat 17551162


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,234,150
Number of Sequences: 3902068
Number of extensions: 2234150
Number of successful extensions: 39129
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39065
Number of HSP's gapped (non-prelim): 64
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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