Clone Name | rbaak4i20 |
---|---|
Clone Library Name | barley_pub |
>emb|AL121585.22|HSBA504H3 Human DNA sequence from clone RP11-504H3 on chromosome 20 Contains gene SNX5 for sorting nexin 5, the C20orf72 gene, the PTMAP3 gene for PTMA (prothymosin, alpha) pseudogene 3, the 3' end of the ZNF339 gene for zinc finger protein 339 and two CpG islands, complete sequence Length = 139953 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 153 tgactctagggaggcatttcag 174 |||||||||||||||||||||| Sbjct: 40207 tgactctagggaggcatttcag 40228
>gb|AC091722.3| Sus scrofa clone RP44-304F21, complete sequence Length = 165604 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 cagagcacagaggaaattgtg 49 ||||||||||||||||||||| Sbjct: 116224 cagagcacagaggaaattgtg 116204
>emb|BX000364.6| Zebrafish DNA sequence from clone DKEY-11K1 in linkage group 17, complete sequence Length = 189563 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 tctcagaaaattcagaagcct 248 ||||||||||||||||||||| Sbjct: 109048 tctcagaaaattcagaagcct 109028
>gb|AC185139.2| Pan troglodytes BAC clone CH251-174C16 from chromosome 2, complete sequence Length = 166804 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cagtatcatgggcagagcat 137 |||||||||||||||||||| Sbjct: 161611 cagtatcatgggcagagcat 161592
>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome Length = 920079 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 tcttgcaattctctttgact 157 |||||||||||||||||||| Sbjct: 520910 tcttgcaattctctttgact 520929
>gb|AC124687.4| Mus musculus BAC clone RP24-447D15 from chromosome 13, complete sequence Length = 176871 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 acaaggggaacagagcacag 38 |||||||||||||||||||| Sbjct: 80535 acaaggggaacagagcacag 80516
>gb|AC122316.3| Mus musculus BAC clone RP23-303G23 from 1, complete sequence Length = 171213 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 gaaattgtgattctaacaga 60 |||||||||||||||||||| Sbjct: 170165 gaaattgtgattctaacaga 170184
>gb|AC158931.4| Mus musculus chromosome 1, clone RP23-3H19, complete sequence Length = 212994 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 attcactcatctcagaaaattcag 242 ||||||||||||| |||||||||| Sbjct: 68169 attcactcatctctgaaaattcag 68192
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete sequence Length = 178692 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 attcactcatctcagaaaat 238 |||||||||||||||||||| Sbjct: 132490 attcactcatctcagaaaat 132509
>gb|AC069542.7| Homo sapiens chromosome 10 clone RP11-390B4, complete sequence Length = 166509 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 gcattcttgcaattctcttt 153 |||||||||||||||||||| Sbjct: 63368 gcattcttgcaattctcttt 63387
>gb|AC099727.13| Mus musculus chromosome 1, clone RP23-353O3, complete sequence Length = 222408 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 gaaattgtgattctaacaga 60 |||||||||||||||||||| Sbjct: 143056 gaaattgtgattctaacaga 143075
>gb|AC093827.3| Homo sapiens BAC clone RP11-397E7 from 4, complete sequence Length = 192263 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 tctctttgactctagggagg 166 |||||||||||||||||||| Sbjct: 164272 tctctttgactctagggagg 164291
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 attcactcatctcagaaaat 238 |||||||||||||||||||| Sbjct: 17542141 attcactcatctcagaaaat 17542122
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 attctctttgactctagggaggca 168 |||||||| ||||||||||||||| Sbjct: 21487368 attctcttcgactctagggaggca 21487345
>gb|AC097462.2| Homo sapiens BAC clone RP11-18O11 from 4, complete sequence Length = 180973 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 aacagagcacagaggaaatt 46 |||||||||||||||||||| Sbjct: 176923 aacagagcacagaggaaatt 176904
>gb|AC104651.2| Homo sapiens BAC clone RP11-217P16 from 2, complete sequence Length = 106954 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cagtatcatgggcagagcat 137 |||||||||||||||||||| Sbjct: 86031 cagtatcatgggcagagcat 86012
>gb|AC016595.4| Homo sapiens chromosome 5 clone CTD-2012M11, complete sequence Length = 131484 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 ctcatctcagaaaattcagaagcc 247 |||||||||| ||||||||||||| Sbjct: 61200 ctcatctcaggaaattcagaagcc 61177
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020C11 Length = 163328 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 attctctttgactctagggaggca 168 |||||||| ||||||||||||||| Sbjct: 82295 attctcttcgactctagggaggca 82272
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 attcactcatctcagaaaat 238 |||||||||||||||||||| Sbjct: 17551181 attcactcatctcagaaaat 17551162 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,234,150 Number of Sequences: 3902068 Number of extensions: 2234150 Number of successful extensions: 39129 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39065 Number of HSP's gapped (non-prelim): 64 length of query: 263 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 241 effective length of database: 17,147,199,772 effective search space: 4132475145052 effective search space used: 4132475145052 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)