ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4i19 |
|---|---|
| Clone Library Name | barley_pub |
>S6A17_RAT (P31662) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -1 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 139 TGL F + E + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>S6A17_MOUSE (Q8BJI1) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -1 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 139 TGL F + E + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>S6A17_HUMAN (Q9H1V8) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -1 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 139 TGL F + E + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>S6A15_BOVIN (Q9XS59) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 30.8 bits (68), Expect = 0.94 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -1 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 163 TGL F + E + HFP+ P F+L LV LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473
>CHIF_DROME (Q9NK54) Protein chiffon| Length = 1711 Score = 30.8 bits (68), Expect = 0.94 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +1 Query: 85 VNPLLLEVVLRPALEPDLAEGERDEQTQVPRHQPQPELRLESR 213 VN L E + L+ D+ E +E+ Q PR +P P LR +S+ Sbjct: 356 VNRFLEEEPVESELDMDVDESLSNEELQSPRQRPSPALREKSK 398
>S6A15_HUMAN (Q9H2J7) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 730 Score = 30.8 bits (68), Expect = 0.94 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -1 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 163 TGL F + E + HFP+ P F+L LV LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473
>S6A15_RAT (Q08469) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -1 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 163 TGL F + E + HFP+ P F+L L+ LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLG 473
>S6A15_MOUSE (Q8BG16) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -1 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 163 TGL F + E + HFP+ P F+L L+ LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLG 473
>CASB_RABIT (P09116) Beta-casein precursor| Length = 228 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/42 (30%), Positives = 28/42 (66%) Frame = +1 Query: 76 QKLVNPLLLEVVLRPALEPDLAEGERDEQTQVPRHQPQPELR 201 Q ++N L+++L P L+P++ E + ++T +P+H+ P L+ Sbjct: 85 QNILNLAQLDMLL-PLLQPEIMEDPKAKETIIPKHKLMPFLK 125
>HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 Length = 780 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = -3 Query: 262 ALLLQHRRGARPLPLAPGSPVAVLA 188 A+ L H+RG PLPL+P SP +LA Sbjct: 621 AIALTHQRG--PLPLSPDSPATLLA 643
>HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 Length = 774 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = -3 Query: 262 ALLLQHRRGARPLPLAPGSPVAVLA 188 A+ L H+RG PLPL+P SP +LA Sbjct: 621 AIALTHQRG--PLPLSPDSPATLLA 643
>HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 (Hyperpolarization-activated cation channel 3) (HAC-3) Length = 779 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = -3 Query: 262 ALLLQHRRGARPLPLAPGSPVAVLA 188 A+ L H+RG PLPL+P SP +LA Sbjct: 620 AIALTHQRG--PLPLSPDSPATLLA 642
>VG50_ICHV1 (Q00130) Hypothetical gene 50 protein| Length = 670 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = -3 Query: 238 GARPLPLAPGSPVAVLAVVGDVAPGSVH 155 G RP P PG P + V PGSVH Sbjct: 97 GTRPRPTIPGVPTTIPNTDAPVDPGSVH 124
>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5038 Score = 28.9 bits (63), Expect = 3.6 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +1 Query: 118 PALEPDLAEGERDEQTQVPRHQPQP 192 P LEP+ A+ E E+ +VP P+P Sbjct: 4497 PELEPEKADAENGEKEEVPEPTPEP 4521
>MYCN_MARMO (Q61976) N-myc proto-oncogene protein (N-myc1)| Length = 460 Score = 28.9 bits (63), Expect = 3.6 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -3 Query: 247 HRRGARPLPLAP-GSPVAVLAVVGDVAPGSVHRAHLRPDRVQGQ 119 ++R P+P+AP GSP AV G AP S A P R+ G+ Sbjct: 197 NKRDPAPVPVAPAGSPAVGAAVAGAAAPASA--AVAAPPRLGGR 238
>DMD_PIG (Q5GN48) Dystrophin| Length = 3674 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 151 RDEQTQVPRHQPQPELRLESRGRGEVGELLADAGEE 258 +D PR Q + LES RGE+ +LAD EE Sbjct: 3470 QDSPLSQPRSPAQILISLESEERGELERILADLEEE 3505
>HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-like protein)| Length = 3969 Score = 28.1 bits (61), Expect = 6.1 Identities = 21/60 (35%), Positives = 29/60 (48%) Frame = +1 Query: 91 PLLLEVVLRPALEPDLAEGERDEQTQVPRHQPQPELRLESRGRGEVGELLADAGEEEPRQ 270 PL+ +++ PA +P GE D T P H P P + R R + EL G E+ RQ Sbjct: 1818 PLMKKII--PAPKPK-GPGEPDSPT--PLHPPTPPILSTDRSREDSPELNPPPGIEDNRQ 1872
>DMD_MOUSE (P11531) Dystrophin| Length = 3678 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 151 RDEQTQVPRHQPQPELRLESRGRGEVGELLADAGEE 258 +D PR Q + LES RGE+ +LAD EE Sbjct: 3474 QDSPLSQPRSPAQILISLESEERGELERILADLEEE 3509
>DMD_HUMAN (P11532) Dystrophin| Length = 3685 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 151 RDEQTQVPRHQPQPELRLESRGRGEVGELLADAGEE 258 +D PR Q + LES RGE+ +LAD EE Sbjct: 3481 QDSPLSQPRSPAQILISLESEERGELERILADLEEE 3516
>EX7L_RHOBA (Q7UTZ9) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 442 Score = 27.7 bits (60), Expect = 8.0 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = +1 Query: 100 LEVVLRPALE--PDLAEGERDEQTQVPRHQPQPELRLESRGRGEVGEL 237 +E+VL PA P E D R +PQP++ + SRG G + +L Sbjct: 198 IEIVLIPASVQGPGSVESLIDGMRAAHRMRPQPDVLIVSRGGGSLEDL 245 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,586,056 Number of Sequences: 219361 Number of extensions: 770229 Number of successful extensions: 2718 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2646 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2718 length of database: 80,573,946 effective HSP length: 66 effective length of database: 66,096,120 effective search space used: 1586306880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
