Clone Name | rbaak4i16 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | PLAS_ORYSA (P20423) Plastocyanin, chloroplast precursor | 39 | 0.003 | 2 | PLAS_HORVU (P08248) Plastocyanin, chloroplast precursor | 37 | 0.016 | 3 | PLAS1_TOBAC (P35476) Plastocyanin A'/A'' | 28 | 5.6 | 4 | PLAS_DAUCA (P20422) Plastocyanin | 28 | 7.3 |
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>PLAS_ORYSA (P20423) Plastocyanin, chloroplast precursor| Length = 154 Score = 38.9 bits (89), Expect = 0.003 Identities = 23/48 (47%), Positives = 25/48 (52%) Frame = +1 Query: 139 SVMDXYKISQEEYLNSPWEIL*SPSPYXAPTXXYWEPHAVTXMVXKVT 282 S +D KISQEEYLN+P E Y EPHA MV KVT Sbjct: 105 SGVDVSKISQEEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVT 152
>PLAS_HORVU (P08248) Plastocyanin, chloroplast precursor| Length = 155 Score = 36.6 bits (83), Expect = 0.016 Identities = 22/48 (45%), Positives = 24/48 (50%) Frame = +1 Query: 139 SVMDXYKISQEEYLNSPWEIL*SPSPYXAPTXXYWEPHAVTXMVXKVT 282 S +D KISQEEYL +P E Y EPHA MV KVT Sbjct: 106 SGVDVSKISQEEYLTAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVT 153
>PLAS1_TOBAC (P35476) Plastocyanin A'/A''| Length = 99 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/41 (39%), Positives = 18/41 (43%) Frame = +1 Query: 160 ISQEEYLNSPWEIL*SPSPYXAPTXXYWEPHAVTXMVXKVT 282 +S+EEYLN P E Y PH MV KVT Sbjct: 57 MSEEEYLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVT 97
>PLAS_DAUCA (P20422) Plastocyanin| Length = 97 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = +1 Query: 145 MDXYKISQEEYLNSPWEIL*SPSPYXAPTXXYWEPHAVTXMVXKVT 282 +D KISQE+YL+ E Y EPHA M +VT Sbjct: 50 VDVSKISQEDYLDGAGESFTVTLTEKGTYKFYCEPHAGAGMKGEVT 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,579,516 Number of Sequences: 219361 Number of extensions: 358272 Number of successful extensions: 534 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 521 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 532 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)