ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLAS_ORYSA (P20423) Plastocyanin, chloroplast precursor 39 0.003
2PLAS_HORVU (P08248) Plastocyanin, chloroplast precursor 37 0.016
3PLAS1_TOBAC (P35476) Plastocyanin A'/A'' 28 5.6
4PLAS_DAUCA (P20422) Plastocyanin 28 7.3

>PLAS_ORYSA (P20423) Plastocyanin, chloroplast precursor|
          Length = 154

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 23/48 (47%), Positives = 25/48 (52%)
 Frame = +1

Query: 139 SVMDXYKISQEEYLNSPWEIL*SPSPYXAPTXXYWEPHAVTXMVXKVT 282
           S +D  KISQEEYLN+P E              Y EPHA   MV KVT
Sbjct: 105 SGVDVSKISQEEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVT 152



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>PLAS_HORVU (P08248) Plastocyanin, chloroplast precursor|
          Length = 155

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 22/48 (45%), Positives = 24/48 (50%)
 Frame = +1

Query: 139 SVMDXYKISQEEYLNSPWEIL*SPSPYXAPTXXYWEPHAVTXMVXKVT 282
           S +D  KISQEEYL +P E              Y EPHA   MV KVT
Sbjct: 106 SGVDVSKISQEEYLTAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVT 153



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>PLAS1_TOBAC (P35476) Plastocyanin A'/A''|
          Length = 99

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 160 ISQEEYLNSPWEIL*SPSPYXAPTXXYWEPHAVTXMVXKVT 282
           +S+EEYLN P E              Y  PH    MV KVT
Sbjct: 57  MSEEEYLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVT 97



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>PLAS_DAUCA (P20422) Plastocyanin|
          Length = 97

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 145 MDXYKISQEEYLNSPWEIL*SPSPYXAPTXXYWEPHAVTXMVXKVT 282
           +D  KISQE+YL+   E              Y EPHA   M  +VT
Sbjct: 50  VDVSKISQEDYLDGAGESFTVTLTEKGTYKFYCEPHAGAGMKGEVT 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,579,516
Number of Sequences: 219361
Number of extensions: 358272
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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