ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4i16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z28347.1|HVPLASC1 H.vulgare (NK 1558) gene for plastocyanin Length = 1884 Score = 137 bits (69), Expect = 3e-29 Identities = 91/99 (91%), Gaps = 3/99 (3%) Strand = Plus / Minus Query: 1 atatgatgcatgcgtgacgacacgtccantttgagcgatcaatcgacccaaattggttgc 60 ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| || Sbjct: 1493 atatgatgcatgc---acgacacgtccaatttgagcgatcaatcgacccaaattggtagc 1437 Query: 61 ttnattanttgacggtnacctttccgaccatgccggccc 99 || |||| |||||||| |||||||||||||||||||||| Sbjct: 1436 ttcattagttgacggtgacctttccgaccatgccggccc 1398 Score = 133 bits (67), Expect = 4e-28 Identities = 166/201 (82%), Gaps = 5/201 (2%) Strand = Plus / Plus Query: 156 caagatctcccaggaggagtacctgaactccccctgggagatcttgta-gtcaccctcac 214 |||||||||||||||||||||||| ||| ||||| | |||| ||| | ||||||||||| Sbjct: 1297 caagatctcccaggaggagtacctcaacgcccccggcgagaccttctccgtcaccctcac 1356 Query: 215 cgtacncngcacctacctgnttntactgggagccccacgccgtgaccngcatggtcanna 274 ||| | | |||||||| | || ||||| ||||||||||| | | || |||||||| | Sbjct: 1357 cgtccccggcacctacg-gcttctactgcgagccccacgctggggccggcatggtcggaa 1415 Query: 275 aggtnaccgncnactaatgaagntaccaattnnggtngattgatcnctcaaattggacgt 334 |||| |||| | |||||||||| |||||||| ||| |||||||| |||||||||||||| Sbjct: 1416 aggtcaccgtcaactaatgaagctaccaatttgggtcgattgatcgctcaaattggacgt 1475 Query: 335 gtcntcatgcatgcatcatat 355 ||| |||||||||||||| Sbjct: 1476 gtcg---tgcatgcatcatat 1493
>emb|Y00704.1|HVPCR Barley mRNA for plastocyanin precursor Length = 662 Score = 137 bits (69), Expect = 3e-29 Identities = 91/99 (91%), Gaps = 3/99 (3%) Strand = Plus / Minus Query: 1 atatgatgcatgcgtgacgacacgtccantttgagcgatcaatcgacccaaattggttgc 60 ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| || Sbjct: 579 atatgatgcatgc---acgacacgtccaatttgagcgatcaatcgacccaaattggtagc 523 Query: 61 ttnattanttgacggtnacctttccgaccatgccggccc 99 || |||| |||||||| |||||||||||||||||||||| Sbjct: 522 ttcattagttgacggtgacctttccgaccatgccggccc 484 Score = 133 bits (67), Expect = 4e-28 Identities = 166/201 (82%), Gaps = 5/201 (2%) Strand = Plus / Plus Query: 156 caagatctcccaggaggagtacctgaactccccctgggagatcttgta-gtcaccctcac 214 |||||||||||||||||||||||| ||| ||||| | |||| ||| | ||||||||||| Sbjct: 383 caagatctcccaggaggagtacctcaacgcccccggcgagaccttctccgtcaccctcac 442 Query: 215 cgtacncngcacctacctgnttntactgggagccccacgccgtgaccngcatggtcanna 274 ||| | | |||||||| | || ||||| ||||||||||| | | || |||||||| | Sbjct: 443 cgtccccggcacctacg-gcttctactgcgagccccacgctggggccggcatggtcggaa 501 Query: 275 aggtnaccgncnactaatgaagntaccaattnnggtngattgatcnctcaaattggacgt 334 |||| |||| | |||||||||| |||||||| ||| |||||||| |||||||||||||| Sbjct: 502 aggtcaccgtcaactaatgaagctaccaatttgggtcgattgatcgctcaaattggacgt 561 Query: 335 gtcntcatgcatgcatcatat 355 ||| |||||||||||||| Sbjct: 562 gtcg---tgcatgcatcatat 579
>gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0023E20, complete sequence Length = 130827 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 catgccggcccatggcgtgg 108 |||||||||||||||||||| Sbjct: 93370 catgccggcccatggcgtgg 93351
>ref|XM_365514.1| Magnaporthe grisea 70-15 predicted protein (MG02216.4) partial mRNA Length = 675 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tcaatcgacccaaattggtt 58 |||||||||||||||||||| Sbjct: 244 tcaatcgacccaaattggtt 225
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 catgccggcccatggcgtgg 108 |||||||||||||||||||| Sbjct: 7269799 catgccggcccatggcgtgg 7269818
>gb|AY104253.1| Zea mays PCO133617 mRNA sequence Length = 1001 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 caagatctcccaggaggagtacct 179 ||||||||| |||||||||||||| Sbjct: 594 caagatctcgcaggaggagtacct 617
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 catgccggcccatggcgtgg 108 |||||||||||||||||||| Sbjct: 7339885 catgccggcccatggcgtgg 7339904 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 960,207 Number of Sequences: 3902068 Number of extensions: 960207 Number of successful extensions: 11527 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11501 Number of HSP's gapped (non-prelim): 20 length of query: 355 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 333 effective length of database: 17,147,199,772 effective search space: 5710017524076 effective search space used: 5710017524076 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
