ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4i15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X74545.1|TAATP2 T.aestivum atp-2 mRNA for ATP synthase beta ... 266 4e-68
2gb|BT018722.1| Zea mays clone EL01N0518D08.d mRNA sequence 101 1e-18
3gb|AY103634.1| Zea mays PCO073309 mRNA sequence 101 1e-18
4ref|NM_192090.1| Oryza sativa (japonica cultivar-group), predic... 84 3e-13
5dbj|AK071414.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 3e-13
6dbj|AK064953.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 3e-13
7ref|XM_475868.1| Oryza sativa (japonica cultivar-group), predic... 78 2e-11
8gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 78 2e-11
9gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome... 78 2e-11
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
11dbj|AK061681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
12dbj|D10491.1|RICATPB Oryza sativa (japonica cultivar-group) mRNA... 78 2e-11
13dbj|AB003549.1| Pisum sativum mRNA for F1 ATPase, complete cds 66 7e-08
14gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 62 1e-06
15gb|BT016806.1| Zea mays clone Contig639 mRNA sequence 60 4e-06
16emb|X54233.1|ZMATP2MT Maize ATP2 mRNA for mitochondrial ATP synt... 60 4e-06
17gb|M36087.1|MZEMT2BATP Zea mays mitochondrial F-1-ATPase subunit... 60 4e-06
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
19dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
20gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete se... 50 0.004
21emb|AJ843974.1| Plantago major partial mRNA for mitochondrial F0... 48 0.016
22ref|NM_147850.2| Arabidopsis thaliana ATP binding / hydrogen-exp... 46 0.064
23ref|NM_120953.2| Arabidopsis thaliana ATP binding / hydrogen-exp... 46 0.064
24gb|BT000796.1| Arabidopsis thaliana unknown protein (At5g08670) ... 46 0.064
25gb|AY117269.1| Arabidopsis thaliana unknown protein (At5g08670) ... 46 0.064
26gb|AY080681.1| Arabidopsis thaliana unknown protein (At5g08670) ... 46 0.064
27emb|AL590346.1|ATT2K12 Arabidopsis thaliana DNA chromosome 5, BA... 46 0.064
28emb|AJ271468.1|ATH271468 Arabidopsis thaliana mRNA for mitochond... 46 0.064
29gb|AY113178.1| Arabidopsis thaliana At5g08670/At5g08670 mRNA, co... 46 0.064
30gb|AY054222.1| Arabidopsis thaliana At5g08670 mRNA, complete cds 46 0.064
31dbj|AK221961.1| Arabidopsis thaliana mRNA for H+-transporting AT... 46 0.064
32gb|BT005920.1| Arabidopsis thaliana At5g08680 gene, complete cds 46 0.064
33dbj|AK118538.1| Arabidopsis thaliana At5g08670 mRNA for putative... 46 0.064
34dbj|AK117922.1| Arabidopsis thaliana At5g08680 mRNA for putative... 46 0.064
35ref|XM_676092.1| Aspergillus nidulans FGSC A4 hypothetical prote... 44 0.25
36gb|AC010025.6| Drosophila melanogaster 3L BAC RPCI98-20B1 (Roswe... 42 1.0
37ref|XM_217209.3| PREDICTED: Rattus norvegicus SUMO/sentrin speci... 42 1.0
38dbj|AB111438.1| Lethenteron reissneri PGK mRNA for phosphoglycer... 42 1.0
39gb|AE003540.3| Drosophila melanogaster chromosome 3L, section 45... 42 1.0
40gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 4.0
41gb|J01594.1|ECOUNC Escherichia coli ATP synthase operon operon, ... 40 4.0
42gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 4.0
43gb|AE014075.1| Escherichia coli CFT073, complete genome 40 4.0
44gb|CP000243.1| Escherichia coli UTI89, complete genome 40 4.0
45gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 4.0
46emb|Z23138.1|ANCATRGNA Aspergillus niger catR gene, complete CDS 40 4.0
47gb|AE008880.1| Salmonella typhimurium LT2, section 184 of 220 of... 40 4.0
48emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 4.0
49emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 4.0
50dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 4.0
51gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 4.0
52gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 4.0
53gb|AE004967.1| Pseudomonas aeruginosa PAO1, section 528 of 529 o... 40 4.0
54gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 4.0
55gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 4.0
56emb|V00311.1|ECPAP2 E. coli genes papB and papG, coding for ATPa... 40 4.0
57emb|V00267.1|ECATPY E. coli genes from the atp (unc) operon. Gen... 40 4.0
58gb|AF188265.1|AF188265 Salmonella typhimurium strain TA98 ATP sy... 40 4.0
59gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 4.0
60emb|X01631.1|ECUNC E. coli origin of replication oriC and genes ... 40 4.0
61gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 4.0
62gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 4.0
63dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 4.0
64gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 40 4.0
65gb|M25464.1|ECOHATP E.coli H+ ATPase alpha, beta, gamma, delta a... 40 4.0
66gb|L15474.1|ASNCPI Aspergillus niger catalase (catR) gene, compl... 40 4.0
67gb|L10328.1|ECOUW82 E. coli; the region from 81.5 to 84.5 minutes 40 4.0
68gb|CP000036.1| Shigella boydii Sb227, complete genome 40 4.0
69gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 4.0 
>emb|X74545.1|TAATP2 T.aestivum atp-2 mRNA for ATP synthase beta subunit
          Length = 1891

 Score =  266 bits (134), Expect = 4e-68
 Identities = 249/298 (83%)
 Strand = Plus / Minus

                                                                        
Query: 1    caggagctggcacgctcctgctcgtgagcaagtctcgggcgaacagctgaaatccnnnnn 60
            ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||     
Sbjct: 1772 caggagctggcacactcctgctcgtgagcaagtctcgggcgaacagctgaaacccaaaaa 1713

                                                                        
Query: 61   nnttaacttgtacagggtggtggtnacacctcgtcannnnnnnnnctccttggcgatctt 120
              ||||||||||||| | |||||| |||||||||||         |||  ||||||||||
Sbjct: 1712 atttaacttgtacagagcggtggtaacacctcgtcatcaggcattctcgctggcgatctt 1653

                                                                        
Query: 121  ctccgccttggccatgacttggncgatgcctccaaccangtagaacgcctgctccgagag 180
            ||| |||||||| ||||||| | ||||||||||||||| ||||||||| |||||||||| 
Sbjct: 1652 ctctgccttggcgatgacttcgtcgatgcctccaaccatgtagaacgcgtgctccgagat 1593

                                                                        
Query: 181  gtcatcgtacttgccgtccaacacaccctnnnnnnnnnnaacaccctcctttagatccac 240
            ||| ||||||||||||||||| |||||||           |||||||||||||| |||||
Sbjct: 1592 gtcgtcgtacttgccgtccaaaacaccctggaaactttggacaccctcctttaggtccac 1533

                                                                      
Query: 241  gtacttccctggagcaccagtgaaaacttnggnaacatggaagggctggctcangaac 298
             |||||||||||||||||||||||||||| || ||||||||| |||||||||| ||||
Sbjct: 1532 atacttccctggagcaccagtgaaaacttcggcaacatggaaaggctggctcaggaac 1475
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>gb|BT018722.1| Zea mays clone EL01N0518D08.d mRNA sequence
          Length = 1977

 Score =  101 bits (51), Expect = 1e-18
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                        
Query: 106  ctccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaa 165
            |||||||||||| ||||| ||||| || |||||||   | ||||||||||||| ||||||
Sbjct: 1683 ctccttggcgattttctcggccttagcaatgacttcctcaatgcctccaaccatgtagaa 1624

                                                                        
Query: 166  cgcctgctccgagaggtcatcgtacttgccgtccaacacaccctnnnnnnnnnnaacacc 225
             | |||||| | ||||||||| |||||||| ||||| |||||||           |||| 
Sbjct: 1623 tgactgctcagggaggtcatcatacttgccatccaaaacaccctggaaactcttcacact 1564

                                                                        
Query: 226  ctcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaaggg 285
             ||||| || ||||| ||||||||||||||||| ||||||||||  |  |||||||| ||
Sbjct: 1563 ttccttcagctccacatacttccctggagcacctgtgaaaacttcagcgacatggaaagg 1504

                        
Query: 286  ctggctcangaa 297
            |||||||| |||
Sbjct: 1503 ctggctcaggaa 1492
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>gb|AY103634.1| Zea mays PCO073309 mRNA sequence
          Length = 1799

 Score =  101 bits (51), Expect = 1e-18
 Identities = 153/192 (79%)
 Strand = Plus / Minus

                                                                        
Query: 106  ctccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaa 165
            |||||||||||| ||||| ||||| || |||||||   | ||||||||||||| ||||||
Sbjct: 1478 ctccttggcgattttctcggccttagcaatgacttcctcaatgcctccaaccatgtagaa 1419

                                                                        
Query: 166  cgcctgctccgagaggtcatcgtacttgccgtccaacacaccctnnnnnnnnnnaacacc 225
             | |||||| | ||||||||| |||||||| ||||| |||||||           |||| 
Sbjct: 1418 tgactgctcagggaggtcatcatacttgccatccaaaacaccctggaaactcttcacact 1359

                                                                        
Query: 226  ctcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaaggg 285
             ||||| || ||||| ||||||||||||||||| ||||||||||  |  |||||||| ||
Sbjct: 1358 ttccttcagctccacatacttccctggagcacctgtgaaaacttcagcgacatggaaagg 1299

                        
Query: 286  ctggctcangaa 297
            |||||||| |||
Sbjct: 1298 ctggctcaggaa 1287
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>ref|NM_192090.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1668

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 153/195 (78%)
 Strand = Plus / Minus

                                                                        
Query: 106  ctccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaa 165
            ||||||||| |||||||| |||||||| ||||| |   |||| |||||||||| ||||||
Sbjct: 1656 ctccttggcaatcttctctgccttggcaatgacctcatcgattcctccaaccatgtagaa 1597

                                                                        
Query: 166  cgcctgctccgagaggtcatcgtacttgccgtccaacacaccctnnnnnnnnnnaacacc 225
             | |||||| |  |||||||| ||||| |||||||| |||||||          ||| | 
Sbjct: 1596 tgactgctcaggaaggtcatcatacttcccgtccaatacaccctggaaactttgaacgct 1537

                                                                        
Query: 226  ctcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaaggg 285
            |||||| || || || ||||| || || ||||| |||||||||| || ||| ||||||||
Sbjct: 1536 ctccttcagctcaacatactttccaggtgcacccgtgaaaacttcggcaacgtggaaggg 1477

                           
Query: 286  ctggctcangaaccg 300
            |||||| | ||||||
Sbjct: 1476 ctggctaaggaaccg 1462
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>dbj|AK071414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093I16, full
            insert sequence
          Length = 1688

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 153/195 (78%)
 Strand = Plus / Minus

                                                                        
Query: 106  ctccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaa 165
            ||||||||| |||||||| |||||||| ||||| |   |||| |||||||||| ||||||
Sbjct: 1478 ctccttggcaatcttctctgccttggcaatgacctcatcgattcctccaaccatgtagaa 1419

                                                                        
Query: 166  cgcctgctccgagaggtcatcgtacttgccgtccaacacaccctnnnnnnnnnnaacacc 225
             | |||||| |  |||||||| ||||| |||||||| |||||||          ||| | 
Sbjct: 1418 tgactgctcaggaaggtcatcatacttcccgtccaatacaccctggaaactttgaacgct 1359

                                                                        
Query: 226  ctcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaaggg 285
            |||||| || || || ||||| || || ||||| |||||||||| || ||| ||||||||
Sbjct: 1358 ctccttcagctcaacatactttccaggtgcacccgtgaaaacttcggcaacgtggaaggg 1299

                           
Query: 286  ctggctcangaaccg 300
            |||||| | ||||||
Sbjct: 1298 ctggctaaggaaccg 1284
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>dbj|AK064953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A02, full
            insert sequence
          Length = 2050

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 153/195 (78%)
 Strand = Plus / Minus

                                                                        
Query: 106  ctccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaa 165
            ||||||||| |||||||| |||||||| ||||| |   |||| |||||||||| ||||||
Sbjct: 1773 ctccttggcaatcttctctgccttggcaatgacctcatcgattcctccaaccatgtagaa 1714

                                                                        
Query: 166  cgcctgctccgagaggtcatcgtacttgccgtccaacacaccctnnnnnnnnnnaacacc 225
             | |||||| |  |||||||| ||||| |||||||| |||||||          ||| | 
Sbjct: 1713 tgactgctcaggaaggtcatcatacttcccgtccaatacaccctggaaactttgaacgct 1654

                                                                        
Query: 226  ctcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaaggg 285
            |||||| || || || ||||| || || ||||| |||||||||| || ||| ||||||||
Sbjct: 1653 ctccttcagctcaacatactttccaggtgcacccgtgaaaacttcggcaacgtggaaggg 1594

                           
Query: 286  ctggctcangaaccg 300
            |||||| | ||||||
Sbjct: 1593 ctggctaaggaaccg 1579
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>ref|XM_475868.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1659

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                        
Query: 226  ctcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaaggg 285
            |||||| || |||||||||||||| |||||||| ||||||||||  |  |||||||||||
Sbjct: 1527 ctccttcagctccacgtacttcccaggagcacccgtgaaaacttcagccacatggaaggg 1468

                        
Query: 286  ctggctcangaa 297
            |||||||| |||
Sbjct: 1467 ctggctcaagaa 1456



 Score = 44.1 bits (22), Expect = 0.25
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 106  ctccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaa 165
            |||||||||||||||||| || || || |||||||   | |||||||| ||||  |||||
Sbjct: 1647 ctccttggcgatcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaa 1588

                                                        
Query: 166  cgcctgctccgagaggtcatcgtacttgccgtccaacacaccct 209
             | |||||| |  |||||||| || || || ||||| |||||||
Sbjct: 1587 tgactgctcgggaaggtcatcatatttcccatccaaaacaccct 1544
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
              complete sequence
          Length = 191765

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                          
Query: 226    ctcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaaggg 285
              |||||| || |||||||||||||| |||||||| ||||||||||  |  |||||||||||
Sbjct: 165145 ctccttcagctccacgtacttcccaggagcacccgtgaaaacttcagccacatggaaggg 165204

                          
Query: 286    ctggctcangaa 297
              |||||||| |||
Sbjct: 165205 ctggctcaagaa 165216



 Score = 44.1 bits (22), Expect = 0.25
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                          
Query: 106    ctccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaa 165
              |||||||||||||||||| || || || |||||||   | |||||||| ||||  |||||
Sbjct: 164737 ctccttggcgatcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaa 164796

                                                          
Query: 166    cgcctgctccgagaggtcatcgtacttgccgtccaacacaccct 209
               | |||||| |  |||||||| || || || ||||| |||||||
Sbjct: 164797 tgactgctcgggaaggtcatcatatttcccatccaaaacaccct 164840
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>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10,
            complete sequence
          Length = 116469

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                        
Query: 226  ctcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaaggg 285
            |||||| || |||||||||||||| |||||||| ||||||||||  |  |||||||||||
Sbjct: 2634 ctccttcagctccacgtacttcccaggagcacccgtgaaaacttcagccacatggaaggg 2693

                        
Query: 286  ctggctcangaa 297
            |||||||| |||
Sbjct: 2694 ctggctcaagaa 2705



 Score = 44.1 bits (22), Expect = 0.25
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                        
Query: 106  ctccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaa 165
            |||||||||||||||||| || || || |||||||   | |||||||| ||||  |||||
Sbjct: 2226 ctccttggcgatcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaa 2285

                                                        
Query: 166  cgcctgctccgagaggtcatcgtacttgccgtccaacacaccct 209
             | |||||| |  |||||||| || || || ||||| |||||||
Sbjct: 2286 tgactgctcgggaaggtcatcatatttcccatccaaaacaccct 2329
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                            
Query: 226      ctcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaaggg 285
                |||||| || |||||||||||||| |||||||| ||||||||||  |  |||||||||||
Sbjct: 27290177 ctccttcagctccacgtacttcccaggagcacccgtgaaaacttcagccacatggaaggg 27290236

                            
Query: 286      ctggctcangaa 297
                |||||||| |||
Sbjct: 27290237 ctggctcaagaa 27290248



 Score = 44.1 bits (22), Expect = 0.25
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                            
Query: 106      ctccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaa 165
                |||||||||||||||||| || || || |||||||   | |||||||| ||||  |||||
Sbjct: 27289769 ctccttggcgatcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaa 27289828

                                                            
Query: 166      cgcctgctccgagaggtcatcgtacttgccgtccaacacaccct 209
                 | |||||| |  |||||||| || || || ||||| |||||||
Sbjct: 27289829 tgactgctcgggaaggtcatcatatttcccatccaaaacaccct 27289872
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>dbj|AK061681.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A03, full
            insert sequence
          Length = 1973

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                        
Query: 226  ctcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaaggg 285
            |||||| || |||||||||||||| |||||||| ||||||||||  |  |||||||||||
Sbjct: 1577 ctccttcagctccacgtacttcccaggagcacccgtgaaaacttcagccacatggaaggg 1518

                        
Query: 286  ctggctcangaa 297
            |||||||| |||
Sbjct: 1517 ctggctcaagaa 1506



 Score = 44.1 bits (22), Expect = 0.25
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 106  ctccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaa 165
            |||||||||||||||||| || || || |||||||   | |||||||| ||||  |||||
Sbjct: 1697 ctccttggcgatcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaa 1638

                                                        
Query: 166  cgcctgctccgagaggtcatcgtacttgccgtccaacacaccct 209
             | |||||| |  |||||||| || || || ||||| |||||||
Sbjct: 1637 tgactgctcgggaaggtcatcatatttcccatccaaaacaccct 1594
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>dbj|D10491.1|RICATPB Oryza sativa (japonica cultivar-group) mRNA for mitochondrial
            F1-ATPase
          Length = 1929

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                        
Query: 226  ctcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaaggg 285
            |||||| || |||||||||||||| |||||||| ||||||||||  |  |||||||||||
Sbjct: 1538 ctccttcagctccacgtacttcccaggagcacccgtgaaaacttcagccacatggaaggg 1479

                        
Query: 286  ctggctcangaa 297
            |||||||| |||
Sbjct: 1478 ctggctcaagaa 1467



 Score = 44.1 bits (22), Expect = 0.25
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                        
Query: 106  ctccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaa 165
            |||||||||||||||||| || || || |||||||   | |||||||| ||||  |||||
Sbjct: 1658 ctccttggcgatcttctcagctttagcaatgacttcctcaatgcctcccaccatatagaa 1599

                                                        
Query: 166  cgcctgctccgagaggtcatcgtacttgccgtccaacacaccct 209
             | |||||| |  |||||||| || || || ||||| |||||||
Sbjct: 1598 tgactgctcgggaaggtcatcatatttcccatccaaaacaccct 1555
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>dbj|AB003549.1| Pisum sativum mRNA for F1 ATPase, complete cds
          Length = 1978

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 85/103 (82%)
 Strand = Plus / Minus

                                                                        
Query: 107  tccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaac 166
            |||||||| |||||||| ||||| || ||||| |   | || || ||||||| ||| || 
Sbjct: 1683 tccttggcaatcttctctgccttcgcaatgacctcttcaataccaccaaccatgtaaaat 1624

                                                       
Query: 167  gcctgctccgagaggtcatcgtacttgccgtccaacacaccct 209
            | |||||| || ||||||||||||||||| |||||||||||||
Sbjct: 1623 gactgctctgaaaggtcatcgtacttgccatccaacacaccct 1581
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                             
Query: 155     accangtagaacgcctgctccgagaggtcatcgtacttgccgtcca 200
               |||| |||||||||||||||||  |||||||||| |||||||||||
Sbjct: 5001632 accatgtagaacgcctgctccggcaggtcatcgtgcttgccgtcca 5001677
to top
>gb|BT016806.1| Zea mays clone Contig639 mRNA sequence
          Length = 2139

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 227  tcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaagggc 286
            ||||| || ||||| ||||| ||||||||||| ||||||||||  |  |||||||| |||
Sbjct: 1581 tccttcagctccacatactttcctggagcacccgtgaaaacttcagcgacatggaaaggc 1522

                       
Query: 287  tggctcangaa 297
            ||||||| |||
Sbjct: 1521 tggctcaggaa 1511
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>emb|X54233.1|ZMATP2MT Maize ATP2 mRNA for mitochondrial ATP synthase beta subunit
          Length = 2029

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 227  tcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaagggc 286
            ||||| || ||||| ||||| ||||||||||| ||||||||||  |  |||||||| |||
Sbjct: 1582 tccttcagctccacatactttcctggagcacccgtgaaaacttcagcgacatggaaaggc 1523

                       
Query: 287  tggctcangaa 297
            ||||||| |||
Sbjct: 1522 tggctcaggaa 1512
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>gb|M36087.1|MZEMT2BATP Zea mays mitochondrial F-1-ATPase subunit 2 mRNA, complete cds;
            nuclear gene for mitochondrial product
          Length = 2054

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 227  tcctttagatccacgtacttccctggagcaccagtgaaaacttnggnaacatggaagggc 286
            ||||| || ||||| ||||| ||||||||||| ||||||||||  |  |||||||| |||
Sbjct: 1534 tccttcagctccacatactttcctggagcacccgtgaaaacttcagcgacatggaaaggc 1475

                       
Query: 287  tggctcangaa 297
            ||||||| |||
Sbjct: 1474 tggctcaggaa 1464
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 254      gcaccagtgaaaacttnggnaacatggaagggctggctcangaaccg 300
                ||||| |||||||||| || ||| |||||||||||||| | ||||||
Sbjct: 28274098 gcacccgtgaaaacttcggcaacgtggaagggctggctaaggaaccg 28274052
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>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0478H03
          Length = 167560

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 254    gcaccagtgaaaacttnggnaacatggaagggctggctcangaaccg 300
              ||||| |||||||||| || ||| |||||||||||||| | ||||||
Sbjct: 108605 gcacccgtgaaaacttcggcaacgtggaagggctggctaaggaaccg 108559
to top
>gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete sequence
          Length = 115175

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 83/103 (80%)
 Strand = Plus / Plus

                                                                          
Query: 107    tccttggcgatcttctccgccttggccatgacttggncgatgcctccaaccangtagaac 166
              |||||||| |||||||| ||||| || |||||||   | || || || ||||  || || 
Sbjct: 113033 tccttggcaatcttctctgcctttgcaatgacttcatcaataccaccgaccatataaaat 113092

                                                         
Query: 167    gcctgctccgagaggtcatcgtacttgccgtccaacacaccct 209
              |||||||| || |||||||| || ||||| |||||||||||||
Sbjct: 113093 gcctgctctgaaaggtcatcatatttgccatccaacacaccct 113135
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>emb|AJ843974.1| Plantago major partial mRNA for mitochondrial F0 ATP synthase beta
           chain (atp2 gene)
          Length = 888

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 182 tcatcgtacttgccgtccaacacaccct 209
           ||||||||||| ||||||||||||||||
Sbjct: 484 tcatcgtactttccgtccaacacaccct 457
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>ref|NM_147850.2| Arabidopsis thaliana ATP binding / hydrogen-exporting ATPase,
            phosphorylative mechanism / hydrogen-transporting ATP
            synthase, rotational mechanism /> AT5G08680 mRNA,
            complete cds
          Length = 2027

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
            |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 1694 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 1635

                  
Query: 204  caccct 209
             |||||
Sbjct: 1634 aaccct 1629
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>ref|NM_120953.2| Arabidopsis thaliana ATP binding / hydrogen-exporting ATPase,
            phosphorylative mechanism / hydrogen-transporting ATP
            synthase, rotational mechanism /> AT5G08670 mRNA,
            complete cds
          Length = 1976

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
            |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 1648 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 1589

                  
Query: 204  caccct 209
             |||||
Sbjct: 1588 aaccct 1583
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>gb|BT000796.1| Arabidopsis thaliana unknown protein (At5g08670) mRNA, partial cds
          Length = 1596

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
            |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 1291 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 1232

                  
Query: 204  caccct 209
             |||||
Sbjct: 1231 aaccct 1226
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>gb|AY117269.1| Arabidopsis thaliana unknown protein (At5g08670) mRNA, complete cds
          Length = 1702

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
            |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 1621 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 1562

                  
Query: 204  caccct 209
             |||||
Sbjct: 1561 aaccct 1556
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>gb|AY080681.1| Arabidopsis thaliana unknown protein (At5g08670) mRNA, complete cds
          Length = 1968

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
            |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 1637 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 1578

                  
Query: 204  caccct 209
             |||||
Sbjct: 1577 aaccct 1572
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>emb|AL590346.1|ATT2K12 Arabidopsis thaliana DNA chromosome 5, BAC clone T2K12 (ESSA project)
          Length = 82896

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                         
Query: 144   cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
             |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 26088 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 26029

                   
Query: 204   caccct 209
              |||||
Sbjct: 26028 aaccct 26023



 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                         
Query: 144   cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
             |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 19900 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 19959

                   
Query: 204   caccct 209
              |||||
Sbjct: 19960 aaccct 19965
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>emb|AJ271468.1|ATH271468 Arabidopsis thaliana mRNA for mitochondrial F1 ATP synthase beta
            subunit (p_beta gene)
          Length = 2533

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
            |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 2202 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 2143

                  
Query: 204  caccct 209
             |||||
Sbjct: 2142 aaccct 2137
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>gb|AY113178.1| Arabidopsis thaliana At5g08670/At5g08670 mRNA, complete cds
          Length = 1671

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
            |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 1621 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 1562

                  
Query: 204  caccct 209
             |||||
Sbjct: 1561 aaccct 1556
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>gb|AY054222.1| Arabidopsis thaliana At5g08670 mRNA, complete cds
          Length = 1948

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
            |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 1648 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 1589

                  
Query: 204  caccct 209
             |||||
Sbjct: 1588 aaccct 1583
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>dbj|AK221961.1| Arabidopsis thaliana mRNA for H+-transporting ATP synthase beta
           chain -like protein, complete cds, clone: RAFL22-54-B08
          Length = 1206

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 144 cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
           |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 893 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 834

                 
Query: 204 caccct 209
            |||||
Sbjct: 833 aaccct 828
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>gb|BT005920.1| Arabidopsis thaliana At5g08680 gene, complete cds
          Length = 1680

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
            |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 1630 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 1571

                  
Query: 204  caccct 209
             |||||
Sbjct: 1570 aaccct 1565
to top
>dbj|AK118538.1| Arabidopsis thaliana At5g08670 mRNA for putative H+-transporting ATP
            synthase beta chain (mitochondrial), complete cds, clone:
            RAFL19-76-L24
          Length = 1940

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
            |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 1647 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 1588

                  
Query: 204  caccct 209
             |||||
Sbjct: 1587 aaccct 1582
to top
>dbj|AK117922.1| Arabidopsis thaliana At5g08680 mRNA for putative H+-transporting ATP
            synthase beta chain (mitochondrial), complete cds, clone:
            RAFL19-10-P09
          Length = 1960

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgatgcctccaaccangtagaacgcctgctccgagaggtcatcgtacttgccgtccaaca 203
            |||| |||||||||| ||| ||||  || || || || |||||||||||||| |||||||
Sbjct: 1674 cgatacctccaaccatgtaaaacgattgttcggaaagatcatcgtacttgccatccaaca 1615

                  
Query: 204  caccct 209
             |||||
Sbjct: 1614 aaccct 1609
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>ref|XM_676092.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7915.2), mRNA
          Length = 2577

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 121 ctccgccttggccatgacttgg 142
           ||||||||||||||||||||||
Sbjct: 294 ctccgccttggccatgacttgg 315
to top
>gb|AC010025.6| Drosophila melanogaster 3L BAC RPCI98-20B1 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 175679

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 229   ctttagatccacgtacttccc 249
             |||||||||||||||||||||
Sbjct: 39766 ctttagatccacgtacttccc 39746
to top
>ref|XM_217209.3| PREDICTED: Rattus norvegicus SUMO/sentrin specific protease 6
           (predicted) (Senp6_predicted), mRNA
          Length = 4253

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 120 tctccgccttggccatgactt 140
           |||||||||||||||||||||
Sbjct: 506 tctccgccttggccatgactt 486
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>dbj|AB111438.1| Lethenteron reissneri PGK mRNA for phosphoglycerate kinase, partial
           cds
          Length = 1176

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 117 tcttctccgccttggccatga 137
           |||||||||||||||||||||
Sbjct: 743 tcttctccgccttggccatga 723
to top
>gb|AE003540.3| Drosophila melanogaster chromosome 3L, section 45 of 83 of the complete
              sequence
          Length = 297381

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 229    ctttagatccacgtacttccc 249
              |||||||||||||||||||||
Sbjct: 256851 ctttagatccacgtacttccc 256831
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 3923304 accatgtagaacgcctgctccggcaggtgatcgta 3923338
to top
>gb|J01594.1|ECOUNC Escherichia coli ATP synthase operon operon, complete sequence; and
            glucosaminephosphate isomerase (glmS) gene, partial cds
          Length = 7881

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 155  accangtagaacgcctgctccgagaggtcatcgta 189
            |||| |||||||||||||||||  |||| ||||||
Sbjct: 7039 accatgtagaacgcctgctccggcaggtgatcgta 7005
to top
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 152     ccaaccangtagaacgcctgctc 174
               ||||||| |||||||||||||||
Sbjct: 3785011 ccaaccatgtagaacgcctgctc 3785033
to top
>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 4417069 accatgtagaacgcctgctccggcaggtgatcgta 4417103
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 4176904 accatgtagaacgcctgctccggcaggtgatcgta 4176938
to top
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 3914059 accatgtagaacgcctgctccggcaggtgatcgta 3914093
to top
>emb|Z23138.1|ANCATRGNA Aspergillus niger catR gene, complete CDS
          Length = 3105

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  ctccttggcgatcttctccg 125
            ||||||||||||||||||||
Sbjct: 2688 ctccttggcgatcttctccg 2669
to top
>gb|AE008880.1| Salmonella typhimurium LT2, section 184 of 220 of the complete genome
          Length = 20518

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                
Query: 155   accangtagaacgcctgctccgagaggtcatcgta 189
             |||| |||||||||||||||||  |||| ||||||
Sbjct: 10660 accatgtagaacgcctgctccggcaggtgatcgta 10694
to top
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 152     ccaaccangtagaacgcctgctc 174
               ||||||| |||||||||||||||
Sbjct: 5054006 ccaaccatgtagaacgcctgctc 5054028
to top
>emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 16/20
          Length = 245050

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                
Query: 155   accangtagaacgcctgctccgagaggtcatcgta 189
             |||| |||||||||||||||||  |||| ||||||
Sbjct: 47067 accatgtagaacgcctgctccggcaggtgatcgta 47033
to top
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 3720645 accatgtagaacgcctgctccggcaggtgatcgta 3720611
to top
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 152     ccaaccangtagaacgcctgctc 174
               ||||||| |||||||||||||||
Sbjct: 4998089 ccaaccatgtagaacgcctgctc 4998111
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                              
Query: 144     cgatgcctccaaccangtagaacgcctgctc 174
               ||||||| || |||| |||||||||||||||
Sbjct: 2878938 cgatgccgccgaccatgtagaacgcctgctc 2878968
to top
>gb|AE004967.1| Pseudomonas aeruginosa PAO1, section 528 of 529 of the complete genome
          Length = 16662

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                
Query: 155   accangtagaacgcctgctccgagaggtcatcgta 189
             |||| |||||||||||||||||  |||| ||||||
Sbjct: 10064 accatgtagaacgcctgctccggcaggtgatcgta 10098
to top
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 3849990 accatgtagaacgcctgctccggcaggtgatcgta 3849956
to top
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 3849173 accatgtagaacgcctgctccggcaggtgatcgta 3849207
to top
>emb|V00311.1|ECPAP2 E. coli genes papB and papG, coding for ATPase subunits beta and
            epsilon, respectively
          Length = 1900

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 155  accangtagaacgcctgctccgagaggtcatcgta 189
            |||| |||||||||||||||||  |||| ||||||
Sbjct: 1340 accatgtagaacgcctgctccggcaggtgatcgta 1306
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>emb|V00267.1|ECATPY E. coli genes from the atp (unc) operon. Genes gamma, beta (uncD) and
            epsilon (uncC) code for subunits of the ATP-synthesizing
            system.  uncC codes for the epsilon subunit of F1 and
            uncD codes for the beta subunit of F1
          Length = 2835

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 155  accangtagaacgcctgctccgagaggtcatcgta 189
            |||| |||||||||||||||||  |||| ||||||
Sbjct: 2280 accatgtagaacgcctgctccggcaggtgatcgta 2246
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>gb|AF188265.1|AF188265 Salmonella typhimurium strain TA98 ATP synthase operon, complete
            sequence
          Length = 7421

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 155  accangtagaacgcctgctccgagaggtcatcgta 189
            |||| |||||||||||||||||  |||| ||||||
Sbjct: 6744 accatgtagaacgcctgctccggcaggtgatcgta 6710
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 3760558 accatgtagaacgcctgctccggcaggtgatcgta 3760524
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>emb|X01631.1|ECUNC E. coli origin of replication oriC and genes gid, unc, EcoURF-1 and
             glmS
          Length = 14526

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                
Query: 155   accangtagaacgcctgctccgagaggtcatcgta 189
             |||| |||||||||||||||||  |||| ||||||
Sbjct: 10001 accatgtagaacgcctgctccggcaggtgatcgta 9967
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 4009210 accatgtagaacgcctgctccggcaggtgatcgta 4009244
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 4778461 accatgtagaacgcctgctccggcaggtgatcgta 4778495
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 4709480 accatgtagaacgcctgctccggcaggtgatcgta 4709514
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 3750558 accatgtagaacgcctgctccggcaggtgatcgta 3750524
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>gb|M25464.1|ECOHATP E.coli H+ ATPase alpha, beta, gamma, delta and epsilon, and integral
            membrane proton channel a, b, and c subunit genes,
            complete cds
          Length = 7141

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 155  accangtagaacgcctgctccgagaggtcatcgta 189
            |||| |||||||||||||||||  |||| ||||||
Sbjct: 6581 accatgtagaacgcctgctccggcaggtgatcgta 6547
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>gb|L15474.1|ASNCPI Aspergillus niger catalase (catR) gene, complete cds
          Length = 3105

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  ctccttggcgatcttctccg 125
            ||||||||||||||||||||
Sbjct: 2688 ctccttggcgatcttctccg 2669
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>gb|L10328.1|ECOUW82 E. coli; the region from 81.5 to 84.5 minutes
          Length = 136254

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                 
Query: 155    accangtagaacgcctgctccgagaggtcatcgta 189
              |||| |||||||||||||||||  |||| ||||||
Sbjct: 105428 accatgtagaacgcctgctccggcaggtgatcgta 105462
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 3773759 accatgtagaacgcctgctccggcaggtgatcgta 3773725
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                  
Query: 155     accangtagaacgcctgctccgagaggtcatcgta 189
               |||| |||||||||||||||||  |||| ||||||
Sbjct: 4096355 accatgtagaacgcctgctccggcaggtgatcgta 4096321


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,175,808
Number of Sequences: 3902068
Number of extensions: 1175808
Number of successful extensions: 17279
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17072
Number of HSP's gapped (non-prelim): 206
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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