>SHH_CHICK (Q91035) Sonic hedgehog protein precursor (SHH) [Contains: Sonic|
           hedgehog protein N-product; Sonic hedgehog protein
           C-product]
          Length = 425

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 476 ACVCDDGANTLRCGDARSLHWKRQKLYKIGSTV 378
           A +C DGA          +HW  + LY+IGS V
Sbjct: 377 AALCPDGAIPTAATTTTGIHWYSRLLYRIGSWV 409

>SYW_RABIT (P23612) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)|
           (Tryptophan--tRNA ligase) (TrpRS)
          Length = 475

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 154 EAYKPKCPLGGSTP-SRGNPPSLLDEPD 234
           E YK  CP G STP S G+P ++ D+ D
Sbjct: 60  EDYKADCPPGNSTPDSHGDPEAVDDKED 87

>DYHC_DROME (P37276) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4639

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 25/86 (29%), Positives = 33/86 (38%)
 Frame = +1

Query: 112  HLQQTHLGAKLYIHEAYKPKCPLGGSTPSRGNPPSLLDEPDPV*LVKRLKETSTVP*KEH 291
            H  Q H G +L++     PK P+      R      + EP P      L+  STVP    
Sbjct: 4098 HSLQPHSGFRLFLTMEINPKVPVNLLRAGR----IFVFEPPPGIRANLLRTFSTVPAARM 4153

Query: 292  ITRLLEIVELYFL*PKKHAKNSRHIR 369
            +    E   LYFL    HA     +R
Sbjct: 4154 MKTPSERARLYFLLAWFHAIVQERLR 4179


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,411,171
Number of Sequences: 219361
Number of extensions: 1447183
Number of successful extensions: 2844
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2843
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)