ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4i13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 48 0.027
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
3gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.42
4gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.42
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
8dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.42
10emb|AL713931.5|CNS07YP8 Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.42
11emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118... 44 0.42
12gb|AC117724.14| Mus musculus chromosome 5, clone RP24-347F19, co... 42 1.7
13gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
14gb|AC144702.2| Danio rerio clone CH211-138D14, complete sequence 42 1.7
15ref|XM_947855.1| Theileria annulata strain Ankara hypothetical p... 42 1.7
16gb|AC110237.8| Mus musculus chromosome 5, clone RP23-104B24, com... 42 1.7
17emb|BX323995.13| Zebrafish DNA sequence from clone RP71-86K19 in... 42 1.7
18emb|BX537262.7| Zebrafish DNA sequence from clone DKEY-111N6 in ... 42 1.7
19dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
21dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
22dbj|AP003822.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
23dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
24dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
25dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
26dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
27gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, ... 42 1.7
28emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.7
29ref|XM_464148.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
30ref|NM_184795.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
31gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2,... 40 6.6
32gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 6.6
33gb|AC124326.11| Mus musculus chromosome 16, clone RP24-463I7, co... 40 6.6
34gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 geno... 40 6.6
35gb|AF313041.4| Homo sapiens chromosome 8 clone RP11-158K1 map q2... 40 6.6
36gb|AF295017.4| Homo sapiens chromosome 8 clone RP11-532M24 map q... 40 6.6
37gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.6
38gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosom... 40 6.6
39gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome... 40 6.6
40gb|AC137820.11| Medicago truncatula clone mth2-15f9, complete se... 40 6.6
41emb|AL442123.12| Human DNA sequence from clone RP11-175O19 on ch... 40 6.6
42emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 6.6
43emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 6.6
44emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
45emb|AL355775.1|ATF12M12 Arabidopsis thaliana DNA chromosome 3, B... 40 6.6
46emb|AL845301.15| Zebrafish DNA sequence from clone CH211-112M17 ... 40 6.6
47emb|BX640521.12| Zebrafish DNA sequence from clone DKEY-125I10 i... 40 6.6
48gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 40 6.6
49gb|AF480914.1| Legionella pneumophila clone pB47G putative Na/Ca... 40 6.6
50gb|AC009990.9| Homo sapiens chromosome 05 clone RP11-94N1, compl... 40 6.6
51gb|AC116339.2| Homo sapiens chromosome 5 clone RP11-1006G2, comp... 40 6.6
52gb|AC090922.4| Homo sapiens chromosome 8, clone RP11-532M24, com... 40 6.6
53gb|AC010259.7| Homo sapiens chromosome 5 clone CTC-454M9, comple... 40 6.6
54gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 6.6
55gb|AC010238.6| Homo sapiens chromosome 5 clone CTC-349C3, comple... 40 6.6
56gb|AC144908.17| Mus musculus chromosome 5, clone RP23-102O19, co... 40 6.6
57dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
58dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
59dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
60gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genom... 40 6.6
61gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic ... 40 6.6
62dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
63dbj|AP003810.6| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
64dbj|AP005448.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
65dbj|AP006177.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
66dbj|AP003220.6| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
67dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
68dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
69dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
70dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
71gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 6.6
72emb|BX469924.9| Zebrafish DNA sequence from clone CH211-117O12 i... 40 6.6
73dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
74emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.6
75emb|AL935279.5| Zebrafish DNA sequence from clone CH211-195M9 in... 40 6.6
76gb|M14303.1|HUMCRYBA3 Human beta-A3/A1-crystallin gene (Hu-beta-... 40 6.6 
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
              complete sequence
          Length = 127506

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 68     tcaaatcctggcttcgcccctgat 91
              ||||||||||||||||||||||||
Sbjct: 100779 tcaaatcctggcttcgcccctgat 100802
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 68       tcaaatcctggcttcgcccctgat 91
                ||||||||||||||||||||||||
Sbjct: 27832107 tcaaatcctggcttcgcccctgat 27832130



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 70       aaatcctggcttcgcccctg 89
                ||||||||||||||||||||
Sbjct: 29114459 aaatcctggcttcgcccctg 29114440
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>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0012L23, complete sequence
          Length = 121659

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 68    tcaaatcctggcttcgcccctg 89
             ||||||||||||||||||||||
Sbjct: 10199 tcaaatcctggcttcgcccctg 10220
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>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08,
              complete sequence
          Length = 148348

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 68     tcaaatcctggcttcgcccctg 89
              ||||||||||||||||||||||
Sbjct: 105034 tcaaatcctggcttcgcccctg 105055
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 68       tcaaatcctggcttcgcccctg 89
                ||||||||||||||||||||||
Sbjct: 19881344 tcaaatcctggcttcgcccctg 19881323



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 64      atattcaaatcctggcttcgc 84
               |||||||||||||||||||||
Sbjct: 9528489 atattcaaatcctggcttcgc 9528469



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 70       aaatcctggcttcgcccctg 89
                ||||||||||||||||||||
Sbjct: 22771487 aaatcctggcttcgcccctg 22771506
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 68      tcaaatcctggcttcgcccctg 89
               ||||||||||||||||||||||
Sbjct: 7150185 tcaaatcctggcttcgcccctg 7150206



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 68       tcaaatcctggcttcgcccct 88
                |||||||||||||||||||||
Sbjct: 10952625 tcaaatcctggcttcgcccct 10952605
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 68       tcaaatcctggcttcgcccctg 89
                ||||||||||||||||||||||
Sbjct: 16501687 tcaaatcctggcttcgcccctg 16501708



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 70      aaatcctggcttcgcccctg 89
               ||||||||||||||||||||
Sbjct: 6620134 aaatcctggcttcgcccctg 6620153



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      cccctgattatccactctaa 103
               ||||||||||||||||||||
Sbjct: 2572286 cccctgattatccactctaa 2572267
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>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0527E02
          Length = 176826

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 68    tcaaatcctggcttcgcccctg 89
             ||||||||||||||||||||||
Sbjct: 75102 tcaaatcctggcttcgcccctg 75123
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 68       tcaaatcctggcttcgcccctg 89
                ||||||||||||||||||||||
Sbjct: 19807558 tcaaatcctggcttcgcccctg 19807537



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 64      atattcaaatcctggcttcgc 84
               |||||||||||||||||||||
Sbjct: 9528374 atattcaaatcctggcttcgc 9528354



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 70       aaatcctggcttcgcccctg 89
                ||||||||||||||||||||
Sbjct: 22699678 aaatcctggcttcgcccctg 22699697
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>emb|AL713931.5|CNS07YP8 Oryza sativa chromosome 12, . BAC OSJNBa0035B12 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 161160

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 68     tcaaatcctggcttcgcccctg 89
              ||||||||||||||||||||||
Sbjct: 158230 tcaaatcctggcttcgcccctg 158209
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>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 165433

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 68     tcaaatcctggcttcgcccctg 89
              ||||||||||||||||||||||
Sbjct: 145916 tcaaatcctggcttcgcccctg 145937
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>gb|AC117724.14| Mus musculus chromosome 5, clone RP24-347F19, complete sequence
          Length = 183083

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 356   gtaggcatatcagaattacac 376
             |||||||||||||||||||||
Sbjct: 41582 gtaggcatatcagaattacac 41602
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>gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBb0061M13, complete sequence
          Length = 174910

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 68     tcaaatcctggcttcgcccct 88
              |||||||||||||||||||||
Sbjct: 121829 tcaaatcctggcttcgcccct 121809
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>gb|AC144702.2| Danio rerio clone CH211-138D14, complete sequence
          Length = 192101

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 121    caaacccatttaggggctaaa 141
              |||||||||||||||||||||
Sbjct: 139998 caaacccatttaggggctaaa 140018
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>ref|XM_947855.1| Theileria annulata strain Ankara hypothetical protein (TA07605)
            partial mRNA
          Length = 1857

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 304  cttgaaattgtagaattgtat 324
            |||||||||||||||||||||
Sbjct: 1463 cttgaaattgtagaattgtat 1443
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>gb|AC110237.8| Mus musculus chromosome 5, clone RP23-104B24, complete sequence
          Length = 243323

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 356    gtaggcatatcagaattacac 376
              |||||||||||||||||||||
Sbjct: 217523 gtaggcatatcagaattacac 217543
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>emb|BX323995.13| Zebrafish DNA sequence from clone RP71-86K19 in linkage group 1, complete
              sequence
          Length = 156662

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 121    caaacccatttaggggctaaa 141
              |||||||||||||||||||||
Sbjct: 121105 caaacccatttaggggctaaa 121085
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>emb|BX537262.7| Zebrafish DNA sequence from clone DKEY-111N6 in linkage group 1,
             complete sequence
          Length = 97035

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   caaacccatttaggggctaaa 141
             |||||||||||||||||||||
Sbjct: 78207 caaacccatttaggggctaaa 78227
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 72      atcctggcttcgcccctgatt 92
               |||||||||||||||||||||
Sbjct: 7792534 atcctggcttcgcccctgatt 7792554
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 70       aaatcctggcttcgcccctga 90
                |||||||||||||||||||||
Sbjct: 26820342 aaatcctggcttcgcccctga 26820322



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 70       aaatcctggcttcgcccctg 89
                ||||||||||||||||||||
Sbjct: 11127765 aaatcctggcttcgcccctg 11127784
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 69       caaatcctggcttcgcccctgatta 93
                ||||||||||||||||| |||||||
Sbjct: 26959083 caaatcctggcttcgccactgatta 26959059



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 10       tatatatgaataattttgta 29
                ||||||||||||||||||||
Sbjct: 16398564 tatatatgaataattttgta 16398583



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aaatcctggcttcgcccctg 89
              ||||||||||||||||||||
Sbjct: 997524 aaatcctggcttcgcccctg 997505
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>dbj|AP003822.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1316_A04
          Length = 87144

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 69    caaatcctggcttcgcccctgatta 93
             ||||||||||||||||| |||||||
Sbjct: 23561 caaatcctggcttcgccactgatta 23537
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>dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0064I23
          Length = 161865

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    atcctggcttcgcccctgatt 92
             |||||||||||||||||||||
Sbjct: 39737 atcctggcttcgcccctgatt 39757
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>dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0503D09
          Length = 144443

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 69     caaatcctggcttcgcccctgatta 93
              ||||||||||||||||| |||||||
Sbjct: 107674 caaatcctggcttcgccactgatta 107650
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>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0033D24
          Length = 186132

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 70     aaatcctggcttcgcccctga 90
              |||||||||||||||||||||
Sbjct: 163684 aaatcctggcttcgcccctga 163664
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>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0665C04
          Length = 177054

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    aaatcctggcttcgcccctga 90
             |||||||||||||||||||||
Sbjct: 83132 aaatcctggcttcgcccctga 83112
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>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome
          Length = 148964

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     gttgttctatatatgaataat 23
             |||||||||||||||||||||
Sbjct: 60077 gttgttctatatatgaataat 60057
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>emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb0077C18 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 123766

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 64     atattcaaatcctggcttcgc 84
              |||||||||||||||||||||
Sbjct: 113713 atattcaaatcctggcttcgc 113693
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>ref|XM_464148.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 519

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 84  cccctgattatccactctaa 103
           ||||||||||||||||||||
Sbjct: 500 cccctgattatccactctaa 519
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>ref|NM_184795.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 246

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 70 aaatcctggcttcgcccctg 89
          ||||||||||||||||||||
Sbjct: 78 aaatcctggcttcgcccctg 59
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>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence
          Length = 81567

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    gatattttttgtttacttga 52
             ||||||||||||||||||||
Sbjct: 72349 gatattttttgtttacttga 72368
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
              genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     ttttgtactcgatatttttt 42
              ||||||||||||||||||||
Sbjct: 972703 ttttgtactcgatatttttt 972722
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>gb|AC124326.11| Mus musculus chromosome 16, clone RP24-463I7, complete sequence
          Length = 168107

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   agtgtaaagagcgtgcatcc 435
             ||||||||||||||||||||
Sbjct: 78413 agtgtaaagagcgtgcatcc 78432
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>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
             sequence
          Length = 121915

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    gatattttttgtttacttga 52
             ||||||||||||||||||||
Sbjct: 77542 gatattttttgtttacttga 77523
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>gb|AF313041.4| Homo sapiens chromosome 8 clone RP11-158K1 map q24.13, complete sequence
          Length = 193882

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    tgtcatttacagcaaaccca 128
              ||||||||||||||||||||
Sbjct: 163888 tgtcatttacagcaaaccca 163869
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>gb|AF295017.4| Homo sapiens chromosome 8 clone RP11-532M24 map q24.13, complete
             sequence
          Length = 207084

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   tgtcatttacagcaaaccca 128
             ||||||||||||||||||||
Sbjct: 27719 tgtcatttacagcaaaccca 27700
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 70       aaatcctggcttcgcccctg 89
                ||||||||||||||||||||
Sbjct: 22103665 aaatcctggcttcgcccctg 22103684
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>gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosome 10, complete
             sequence
          Length = 208709

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   catatcagaattacactcac 380
             ||||||||||||||||||||
Sbjct: 58374 catatcagaattacactcac 58393
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>gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome 10, complete sequence
          Length = 231668

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    catatcagaattacactcac 380
              ||||||||||||||||||||
Sbjct: 203217 catatcagaattacactcac 203236
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>gb|AC137820.11| Medicago truncatula clone mth2-15f9, complete sequence
          Length = 134674

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     tatatatgaataattttgta 29
              ||||||||||||||||||||
Sbjct: 110763 tatatatgaataattttgta 110782
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>emb|AL442123.12| Human DNA sequence from clone RP11-175O19 on chromosome 10 Contains the
             3' end of the MLR2 gene for a novel protein (likely
             ortholog of mouse transcription factor MLR2), the gene for
             a novel protein novel protein (DKFZP564P1916)(FLJ13022),
             the 3' end of the SLIT1 gene for slit homolog 1
             (Drosophila) and a CpG island, complete sequence
          Length = 96660

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 321   gtatttcttatagcccaaaaaaca 344
             |||||||||||||||| |||||||
Sbjct: 76517 gtatttcttatagcccgaaaaaca 76494
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 23      ttttgtactcgatatttttt 42
               ||||||||||||||||||||
Sbjct: 1042742 ttttgtactcgatatttttt 1042761
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 23      ttttgtactcgatatttttt 42
               ||||||||||||||||||||
Sbjct: 1065361 ttttgtactcgatatttttt 1065380
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>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08,
             complete sequence
          Length = 157734

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaatcctggcttcgcccctg 89
             ||||||||||||||||||||
Sbjct: 23925 aaatcctggcttcgcccctg 23906
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>emb|AL355775.1|ATF12M12 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12
          Length = 106730

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   aacggtcccatgaaaggagc 289
             ||||||||||||||||||||
Sbjct: 98035 aacggtcccatgaaaggagc 98016
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>emb|AL845301.15| Zebrafish DNA sequence from clone CH211-112M17 in linkage group 20
             Contains the gene for a novel mcm domain containing
             protein, the 5' end of a novel gene, the 3' end of a novel
             gene and a CpG island, complete sequence
          Length = 171078

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   ggctaaattgtacattcatg 154
             ||||||||||||||||||||
Sbjct: 12117 ggctaaattgtacattcatg 12098
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>emb|BX640521.12| Zebrafish DNA sequence from clone DKEY-125I10 in linkage group 5,
             complete sequence
          Length = 126380

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 18    aataattttgtactcgatattttt 41
             |||||| |||||||||||||||||
Sbjct: 53655 aataatattgtactcgatattttt 53678
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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 341    aacatgcaaagaatagtagg 360
              ||||||||||||||||||||
Sbjct: 781679 aacatgcaaagaatagtagg 781698
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>gb|AF480914.1| Legionella pneumophila clone pB47G putative Na/Ca antiporter (nceA)
            gene, complete cds; and unknown gene
          Length = 3500

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   ttttgtactcgatatttttt 42
            ||||||||||||||||||||
Sbjct: 2049 ttttgtactcgatatttttt 2030
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>gb|AC009990.9| Homo sapiens chromosome 05 clone RP11-94N1, complete sequence
          Length = 159772

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 314    tagaattgtatttcttatagccca 337
              |||||||| |||||||||||||||
Sbjct: 155678 tagaattgcatttcttatagccca 155701
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>gb|AC116339.2| Homo sapiens chromosome 5 clone RP11-1006G2, complete sequence
          Length = 74705

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 314   tagaattgtatttcttatagccca 337
             |||||||| |||||||||||||||
Sbjct: 64084 tagaattgcatttcttatagccca 64061
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>gb|AC090922.4| Homo sapiens chromosome 8, clone RP11-532M24, complete sequence
          Length = 207069

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   tgtcatttacagcaaaccca 128
             ||||||||||||||||||||
Sbjct: 27722 tgtcatttacagcaaaccca 27703
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>gb|AC010259.7| Homo sapiens chromosome 5 clone CTC-454M9, complete sequence
          Length = 195476

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 314    tagaattgtatttcttatagccca 337
              |||||||| |||||||||||||||
Sbjct: 164298 tagaattgcatttcttatagccca 164321
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 7       ttctatatatgaataatttt 26
               ||||||||||||||||||||
Sbjct: 1692679 ttctatatatgaataatttt 1692660
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>gb|AC010238.6| Homo sapiens chromosome 5 clone CTC-349C3, complete sequence
          Length = 167022

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    tcctggcttcgcccctgatt 92
             ||||||||||||||||||||
Sbjct: 44788 tcctggcttcgcccctgatt 44769
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>gb|AC144908.17| Mus musculus chromosome 5, clone RP23-102O19, complete sequence
          Length = 212299

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 378   cactgtgcttcctattttatacag 401
             |||||||||||| |||||||||||
Sbjct: 78175 cactgtgcttcccattttatacag 78198
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 70       aaatcctggcttcgcccctg 89
                ||||||||||||||||||||
Sbjct: 11882642 aaatcctggcttcgcccctg 11882623
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 70       aaatcctggcttcgcccctg 89
                ||||||||||||||||||||
Sbjct: 22096712 aaatcctggcttcgcccctg 22096731
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 70       aaatcctggcttcgcccctg 89
                ||||||||||||||||||||
Sbjct: 25249820 aaatcctggcttcgcccctg 25249839
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>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete
             sequence
          Length = 167397

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaatcctggcttcgcccctg 89
             ||||||||||||||||||||
Sbjct: 44599 aaatcctggcttcgcccctg 44580
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>gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete
              sequence
          Length = 132987

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aaatcctggcttcgcccctg 89
              ||||||||||||||||||||
Sbjct: 121197 aaatcctggcttcgcccctg 121178
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>dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1158C05
          Length = 145514

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaatcctggcttcgcccctg 89
             ||||||||||||||||||||
Sbjct: 46864 aaatcctggcttcgcccctg 46883
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>dbj|AP003810.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1119_A04
          Length = 128906

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aaatcctggcttcgcccctg 89
              ||||||||||||||||||||
Sbjct: 101871 aaatcctggcttcgcccctg 101852
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>dbj|AP005448.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0404G11
          Length = 167623

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    tatatatgaataattttgta 29
             ||||||||||||||||||||
Sbjct: 39355 tatatatgaataattttgta 39374
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>dbj|AP006177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0734C01
          Length = 163208

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaatcctggcttcgcccctg 89
             ||||||||||||||||||||
Sbjct: 41997 aaatcctggcttcgcccctg 41978
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>dbj|AP003220.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0035I14
          Length = 117919

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     aaatcctggcttcgcccctg 89
              ||||||||||||||||||||
Sbjct: 115829 aaatcctggcttcgcccctg 115848
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>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0473C09
          Length = 141066

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     tatatatgaataattttgta 29
              ||||||||||||||||||||
Sbjct: 104620 tatatatgaataattttgta 104639
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaatcctggcttcgcccctg 89
             ||||||||||||||||||||
Sbjct: 54509 aaatcctggcttcgcccctg 54528
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>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_C03
          Length = 103297

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    cccctgattatccactctaa 103
             ||||||||||||||||||||
Sbjct: 51069 cccctgattatccactctaa 51050
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>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1446H11
          Length = 135488

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaatcctggcttcgcccctg 89
             ||||||||||||||||||||
Sbjct: 98371 aaatcctggcttcgcccctg 98390
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 336     caaaaaacatgcaaagaata 355
               ||||||||||||||||||||
Sbjct: 3472641 caaaaaacatgcaaagaata 3472622
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>emb|BX469924.9| Zebrafish DNA sequence from clone CH211-117O12 in linkage group 18,
             complete sequence
          Length = 166515

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 18    aataattttgtactcgatattttt 41
             |||||||||||||| |||||||||
Sbjct: 76224 aataattttgtactagatattttt 76247
to top
>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0560B10, complete sequence
          Length = 108295

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaatcctggcttcgcccctg 89
             ||||||||||||||||||||
Sbjct: 86281 aaatcctggcttcgcccctg 86300
to top
>emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb0092G12 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131603

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaatcctggcttcgcccctg 89
             ||||||||||||||||||||
Sbjct: 83337 aaatcctggcttcgcccctg 83356
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>emb|AL935279.5| Zebrafish DNA sequence from clone CH211-195M9 in linkage group 24,
            complete sequence
          Length = 193366

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  tatttcttatagcccaaaaa 341
            ||||||||||||||||||||
Sbjct: 9612 tatttcttatagcccaaaaa 9593
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>gb|M14303.1|HUMCRYBA3 Human beta-A3/A1-crystallin gene (Hu-beta-A3/A1), exon 3
          Length = 750

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 407 gtctcttccagtgtaaagag 426
           ||||||||||||||||||||
Sbjct: 227 gtctcttccagtgtaaagag 208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,397,246
Number of Sequences: 3902068
Number of extensions: 4397246
Number of successful extensions: 117945
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117090
Number of HSP's gapped (non-prelim): 855
length of query: 485
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 463
effective length of database: 17,147,199,772
effective search space: 7939153494436
effective search space used: 7939153494436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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