ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4i05 |
|---|---|
| Clone Library Name | barley_pub |
>PSAD_HORVU (P36213) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 205 Score = 87.0 bits (214), Expect = 1e-17 Identities = 41/41 (100%), Positives = 41/41 (100%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 127 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI Sbjct: 165 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205
>PSAD_NICSY (P29302) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 204 Score = 78.2 bits (191), Expect = 5e-15 Identities = 36/41 (87%), Positives = 38/41 (92%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 127 DGVYPEKVNAGRQGVGQNFRSIGKN SPIEVKFTGK +D+ Sbjct: 164 DGVYPEKVNAGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204
>PSAD_CUCSA (P32869) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) (PS I subunit 5) Length = 207 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/41 (85%), Positives = 38/41 (92%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 127 DGVYPEKVN GR+GVGQNFRSIGKNVSPIEVKFTGK +D+ Sbjct: 167 DGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
>PSAD_SPIOL (P12353) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 212 Score = 73.9 bits (180), Expect = 1e-13 Identities = 34/41 (82%), Positives = 36/41 (87%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 127 DGVYPEKVN GRQGVG N RSIGKNVSPIEVKFTGK +D+ Sbjct: 172 DGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>PSAD2_ARATH (Q9SA56) Photosystem I reaction center subunit II-2, chloroplast| precursor (Photosystem I 20 kDa subunit 2) (PSI-D2) Length = 204 Score = 73.2 bits (178), Expect = 2e-13 Identities = 33/41 (80%), Positives = 36/41 (87%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 127 DGVYPEK N GR+GVG N RSIGKNVSPIEVKFTGK S+D+ Sbjct: 164 DGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204
>PSAD1_ARATH (Q9S7H1) Photosystem I reaction center subunit II-1, chloroplast| precursor (Photosystem I 20 kDa subunit 1) (PSI-D1) Length = 208 Score = 73.2 bits (178), Expect = 2e-13 Identities = 33/41 (80%), Positives = 36/41 (87%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 127 DGVYPEK N GR+GVG N RSIGKNVSPIEVKFTGK S+D+ Sbjct: 168 DGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>PSAD_LYCES (P12372) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 208 Score = 72.8 bits (177), Expect = 2e-13 Identities = 34/41 (82%), Positives = 36/41 (87%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 127 DGVYPEKVN GR+GVGQNFRSIGKN S IEVKFTGK +DI Sbjct: 168 DGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208
>PSAD_CHLRE (Q39615) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 196 Score = 59.3 bits (142), Expect = 3e-09 Identities = 26/36 (72%), Positives = 31/36 (86%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGK 142 DGVYPEKVNAGR G QN R IG+NV+PI+VKF+G+ Sbjct: 154 DGVYPEKVNAGRVGANQNMRRIGQNVNPIKVKFSGR 189
>PSAD_PORPU (P51279) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 141 Score = 55.1 bits (131), Expect = 5e-08 Identities = 25/40 (62%), Positives = 30/40 (75%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVNAGR + SIGKNV+PI VKFT K ++D Sbjct: 102 DGVFPEKVNAGRASINSVDHSIGKNVNPINVKFTNKATYD 141
>PSAD_ANASP (P58573) Photosystem I reaction center subunit II| Length = 139 Score = 55.1 bits (131), Expect = 5e-08 Identities = 25/40 (62%), Positives = 33/40 (82%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVNAGR+ V N RSIG+N +P +VKF+GK ++D Sbjct: 99 DGVFPEKVNAGREKVRFNARSIGENPNPSQVKFSGKATYD 138
>PSAD_GUITH (O78502) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 141 Score = 53.1 bits (126), Expect = 2e-07 Identities = 24/40 (60%), Positives = 30/40 (75%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVN GR GVG SIGKN++P ++KFT K+ D Sbjct: 102 DGVFPEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNKSFCD 141
>PSAD_ANAVT (P31089) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 53.1 bits (126), Expect = 2e-07 Identities = 24/40 (60%), Positives = 32/40 (80%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVN GR+ V N RSIG+N +P +VKF+GK ++D Sbjct: 98 DGVFPEKVNPGREKVRFNARSIGENPNPSQVKFSGKATYD 137
>PSAD_CYAPA (Q9T4W8) Photosystem I reaction center subunit II, cyanelle| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 220 Score = 52.4 bits (124), Expect = 3e-07 Identities = 23/40 (57%), Positives = 29/40 (72%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVN GR VG N R IG+N P ++KF G+ +FD Sbjct: 176 DGVFPEKVNPGRVAVGSNKRRIGQNPDPAKLKFKGQETFD 215
>PSAD_SYNVU (P0A422) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 52.0 bits (123), Expect = 4e-07 Identities = 23/40 (57%), Positives = 30/40 (75%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVN GR+ V RSIG+N +P ++KFTGK +D Sbjct: 98 DGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 137
>PSAD_SYNEN (P0A421) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 52.0 bits (123), Expect = 4e-07 Identities = 23/40 (57%), Positives = 30/40 (75%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVN GR+ V RSIG+N +P ++KFTGK +D Sbjct: 98 DGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 137
>PSAD_SYNEL (P0A420) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 52.0 bits (123), Expect = 4e-07 Identities = 23/40 (57%), Positives = 30/40 (75%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVN GR+ V RSIG+N +P ++KFTGK +D Sbjct: 98 DGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 137
>PSAD_CYACA (Q9TLR2) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 140 Score = 51.2 bits (121), Expect = 7e-07 Identities = 23/39 (58%), Positives = 30/39 (76%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSF 133 DGV+PEKVN GR+ +G+ +IGKN++P EVKFT K F Sbjct: 102 DGVFPEKVNEGRKPIGKIDHNIGKNLNPAEVKFTHKTIF 140
>PSAD_SYNY3 (P19569) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 140 Score = 50.1 bits (118), Expect = 2e-06 Identities = 20/41 (48%), Positives = 29/41 (70%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 127 DGV+PEKVN GR+ G R IG+N P+ +KF+GK +++ Sbjct: 100 DGVFPEKVNEGREAQGTKTRRIGQNPEPVTIKFSGKAPYEV 140
>PSAD_GLOVI (Q7NF26) Photosystem I reaction center subunit II| Length = 144 Score = 48.9 bits (115), Expect = 3e-06 Identities = 23/41 (56%), Positives = 29/41 (70%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 127 DGV EK N GR+ VG R IG N +P++VKFTGK +FD+ Sbjct: 104 DGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFTGKETFDV 144
>PSAD_MASLA (O07115) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 142 Score = 48.5 bits (114), Expect = 4e-06 Identities = 22/40 (55%), Positives = 29/40 (72%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVN GRQ V N R IG+N P ++KF+G ++D Sbjct: 99 DGVFPEKVNPGRQKVRYNDRRIGQNPDPAKLKFSGVATYD 138
>PSAD_SYNP6 (P23076) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 141 Score = 47.4 bits (111), Expect = 1e-05 Identities = 21/39 (53%), Positives = 27/39 (69%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSF 133 DGV+PEKVN GR G+ R IG+N +P +KFTGK + Sbjct: 101 DGVFPEKVNEGRSFAGKVDRRIGQNPNPATIKFTGKQPY 139
>PSAD_NOSS8 (P56596) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 47.4 bits (111), Expect = 1e-05 Identities = 22/40 (55%), Positives = 30/40 (75%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVN GR+ V R IG+N SP ++KF+GK ++D Sbjct: 98 DGVFPEKVNEGREKVRFVPRRIGQNPSPAQLKFSGKYTYD 137
>PSAD_FREDI (P23808) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 47.4 bits (111), Expect = 1e-05 Identities = 22/40 (55%), Positives = 30/40 (75%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVNAGR+ V R IG+N +P +KF+GK ++D Sbjct: 98 DGVFPEKVNAGREKVRFVPRRIGENPNPSAIKFSGKYTYD 137
>PSAD_SKECO (O96800) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 139 Score = 45.8 bits (107), Expect = 3e-05 Identities = 20/40 (50%), Positives = 27/40 (67%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVN GR V SIGKN +P +KF+G +++ Sbjct: 99 DGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138
>PSAD_ODOSI (P49481) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 139 Score = 45.8 bits (107), Expect = 3e-05 Identities = 20/40 (50%), Positives = 27/40 (67%) Frame = -3 Query: 249 DGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 130 DGV+PEKVN GR V SIGKN +P +KF+G +++ Sbjct: 99 DGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138
>KCNK9_XENLA (Q63ZI0) Potassium channel subfamily K member 9| Length = 374 Score = 29.3 bits (64), Expect = 2.8 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = -2 Query: 244 RLPGEGQRRQAGRGTELPQHRQERQPHRGQVHRQELLRHLISLVRRICACLCVRASSST 68 R E + AG + H QE PH Q ++ E ++ ++ +C+C+C R+ T Sbjct: 255 RRDAEERASLAGNRNSMIIHIQEDTPHGRQRYKAE-----VTDLQSVCSCMCYRSHEYT 308
>RPTN_MOUSE (P97347) Repetin| Length = 1130 Score = 28.1 bits (61), Expect = 6.2 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%) Frame = -2 Query: 226 QRRQAGRGTELP----QHRQERQPHRGQVHRQELLRH 128 Q+ Q GR + P + RQ++ PHRGQ RQ+ H Sbjct: 330 QQGQKGRKDQSPHLGQKGRQDQSPHRGQKGRQDQSPH 366 Score = 27.7 bits (60), Expect = 8.2 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = -2 Query: 238 PGEGQRRQAGRGTELPQH----RQERQPHRGQVHRQELLRHL 125 P +GQ+ GR + P RQ++ PH+GQ RQ+ HL Sbjct: 365 PHQGQK---GRQDQSPHRGQKGRQDQSPHQGQKGRQDQSPHL 403
>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 28.1 bits (61), Expect = 6.2 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = -2 Query: 244 RLPG-EGQRRQAGRGTELPQHRQERQPHRGQVHRQE 140 R PG EG RR RG+ P+ ER+P R + HR + Sbjct: 908 RGPGPEGGRRHHRRGS--PEEAAEREPRRHRAHRHQ 941
>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor| Length = 839 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = -2 Query: 238 PGEGQR-RQAGRGTELPQHRQERQPHRGQ 155 PG+GQ+ +Q G+G + Q Q +QP +GQ Sbjct: 390 PGQGQQGQQVGQGQQAQQPGQGQQPGQGQ 418
>DGKZ_HUMAN (Q13574) Diacylglycerol kinase zeta (EC 2.7.1.107) (Diglyceride| kinase zeta) (DGK-zeta) (DAG kinase zeta) Length = 1117 Score = 27.7 bits (60), Expect = 8.2 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = -2 Query: 238 PGEGQRRQAGRGTELPQHRQERQPHRGQVHRQELLRHLISLVRRICACLC-VRASSST 68 PGEGQRR + G LP + R+ GQ R S + C C VRA S+ Sbjct: 16 PGEGQRRPSSVG--LPTGKARRRSPAGQASSSLAQRRRSSAQLQGCLLSCGVRAQGSS 71
>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor| Length = 838 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = -2 Query: 238 PGEGQR-RQAGRGTELPQHRQERQPHRGQ 155 PG+GQ+ +Q G+G + Q Q +QP +GQ Sbjct: 395 PGQGQQGQQVGQGQQAQQPGQGQQPGQGQ 423 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,759,699 Number of Sequences: 219361 Number of extensions: 380198 Number of successful extensions: 1317 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 1216 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1307 length of database: 80,573,946 effective HSP length: 59 effective length of database: 67,631,647 effective search space used: 1623159528 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
