Clone Name | rbaak4i01 |
---|---|
Clone Library Name | barley_pub |
>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 42.7 bits (99), Expect = 5e-04 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 8/106 (7%) Frame = -1 Query: 372 NAATNR--SPRAAAFRVRAAKLPAGVQVPRAQPKLSEPF------LGFTKTAEVWNSRAC 217 NA++++ S A F+ +A P V P+ + K+ + +GFTK E++ R Sbjct: 48 NASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVA 107 Query: 216 MMGLIGTFIVELILHKGVLEIIGFEVGKGLDIPL*FALPLCLWMMI 79 M+G + + E I KG+L + E G IP+ A PL L+ ++ Sbjct: 108 MIGFAASLLGEAITGKGILAQLNLETG----IPIYEAEPLLLFFIL 149
>PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 42.4 bits (98), Expect = 6e-04 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Frame = -1 Query: 354 SPRAAAFRVRAAKLPAGVQVPRAQPKLSEPF------LGFTKTAEVWNSRACMMGLIGTF 193 S A F+ +A K PA VP+ + K+ + +GFTK E++ R M+G + Sbjct: 55 STTVALFKSKA-KAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113 Query: 192 IVELILHKGVLEIIGFEVGKGLDIPL*FALPLCLWMMI 79 + E I KG+L + E G IP+ A PL L+ ++ Sbjct: 114 LGEAITGKGILAQLNLETG----IPIYEAEPLLLFFIL 147
>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 42.0 bits (97), Expect = 8e-04 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%) Frame = -1 Query: 354 SPRAAAFRVRAAKLPAGVQVPRAQPKLSEPF------LGFTKTAEVWNSRACMMGLIGTF 193 S A F+ +A P V P+ + K+ + +GFTK E++ R M+G + Sbjct: 56 STTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 115 Query: 192 IVELILHKGVLEIIGFEVGKGLDIPL*FALPLCLWMMI 79 + E I KG+L + E G IP+ A PL L+ ++ Sbjct: 116 LGEAITGKGILAQLNLETG----IPIYEAEPLLLFFIL 149
>YCF17_PORPU (P51355) Hypothetical 5.5 kDa protein ycf17 (ORF48)| Length = 48 Score = 41.2 bits (95), Expect = 0.001 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = -1 Query: 264 FLGFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEIIG 148 F GFT +AE WN R M+G + +EL+ KG+L + G Sbjct: 7 FWGFTDSAETWNGRFAMIGFMAVIFIELVTGKGLLYLSG 45
>HEMH_ANASP (Q8YQR8) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/37 (48%), Positives = 25/37 (67%) Frame = -1 Query: 258 GFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEIIG 148 G T +AEVWN R M+G I I+EL+ +G+L +IG Sbjct: 350 GMTSSAEVWNGRIAMLGFI-ALIIELVTGQGLLHMIG 385
>PSBS_ARATH (Q9XF91) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 265 Score = 37.4 bits (85), Expect = 0.019 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Frame = -1 Query: 342 AAFRVRAAKLPAGVQVPRAQPKL----SEPFLGFTKTAEVWNSRACMMGLIGTFIVELIL 175 A F+ + P V+ P+++ + + +GFTK E++ R M+G + + E + Sbjct: 52 ALFKPKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALT 111 Query: 174 HKGVLEIIGFEVGKGLDIPL*FALPLCLWMMI 79 KG+L + E G IP+ A PL L+ ++ Sbjct: 112 GKGILAQLNLETG----IPIYEAEPLLLFFIL 139
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 36.2 bits (82), Expect = 0.043 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -1 Query: 258 GFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEIIG 148 GFT AE WN R M+G I + E + +G L +G Sbjct: 11 GFTSGAENWNGRLAMLGFIAALLTESLTGQGTLHFLG 47
>PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 36.2 bits (82), Expect = 0.043 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Frame = -1 Query: 321 AKLPAGVQVPRAQPKL----SEPFLGFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEI 154 AK P V+ P+ + + + +GFTK E++ R M+G + + E I KG+L Sbjct: 68 AKAPKKVEKPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQ 127 Query: 153 IGFEVGKGLDIPL*FALPLCLWMMI 79 + E G IP+ A PL L+ ++ Sbjct: 128 LNLETG----IPIYEAEPLLLFFIL 148
>HEMH_SYNY3 (P54225) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 36.2 bits (82), Expect = 0.043 Identities = 18/37 (48%), Positives = 22/37 (59%) Frame = -1 Query: 258 GFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEIIG 148 G T AEVWN R M+G I +VELI +G L +G Sbjct: 350 GLTTAAEVWNGRLAMLGFI-ALLVELISGQGPLHFVG 385
>HEMH2_ARATH (O04921) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 512 Score = 36.2 bits (82), Expect = 0.043 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1 Query: 258 GFTKTAEVWNSRACMMGLIGTFIVELILHKGVL 160 G+TK+AE WN RA M+ ++ ++E+ KG L Sbjct: 471 GWTKSAETWNGRAAMLAVLALLVLEVTTGKGFL 503
>HEMH_ORYSA (O22101) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 526 Score = 34.7 bits (78), Expect = 0.13 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -1 Query: 258 GFTKTAEVWNSRACMMGLIGTFIVELILHKGVL 160 G+TK+AE WN RA M+ ++ ++E+ +G L Sbjct: 484 GWTKSAETWNGRAAMLAVLALLVLEVTTGEGFL 516
>HEMH_SYNP6 (Q5N2B2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -1 Query: 258 GFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEIIG 148 G T AEVWN R M+G + +VEL+ +G L +G Sbjct: 350 GITLNAEVWNGRIAMLGFL-ALLVELLTGRGPLHALG 385
>HEMH_SYNPX (Q7U5G0) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 32.3 bits (72), Expect = 0.63 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -1 Query: 258 GFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEIIG 148 G+ ++EVWN R M+G F++ELI G L +G Sbjct: 354 GWNNSSEVWNGRLAMLG-FSAFLLELISGHGPLHALG 389
>HEMH_SYNEL (Q8DGU6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 32.3 bits (72), Expect = 0.63 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -1 Query: 258 GFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEIIG 148 G T AE WN R M+G + ++ELI +G L ++G Sbjct: 351 GMTSAAERWNGRLAMLGFL-ALMIELISGQGPLHMLG 386
>YCF17_GUITH (O78425) Hypothetical 6.2 kDa protein ycf17| Length = 53 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -1 Query: 258 GFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEII 151 GF AE WN R M+ + VE I +K VL+++ Sbjct: 15 GFNVYAENWNGRLAMISFLLIICVEFITNKNVLDLV 50
>HEMH_PROMA (Q7VD58) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 31.6 bits (70), Expect = 1.1 Identities = 24/59 (40%), Positives = 30/59 (50%) Frame = -1 Query: 324 AAKLPAGVQVPRAQPKLSEPFLGFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEIIG 148 AAKLP V++ Q K G+ +AEVWN R M I F EL++ G L IG Sbjct: 336 AAKLPEKVKL-YPQEKWQ---WGWNNSAEVWNGRVAMFVFIICFF-ELVIGNGPLHYIG 389
>ELI6_HORVU (P14896) Low molecular mass early light-inducible protein HV60,| chloroplast precursor (ELIP) Length = 167 Score = 31.2 bits (69), Expect = 1.4 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Frame = -1 Query: 426 SMVHAPSLLAVQTFRGQRNAATNRSPRAAA-FRVRAAKLPAGVQVPRAQPKLSEPFLG-- 256 +MV + LAV+ RG + S A F A L VP Q + +E G Sbjct: 74 AMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAI 133 Query: 255 FTKTAEVWNSRACMMGLIGTFIVELI 178 AE+WN R M+GL+ E+I Sbjct: 134 MNANAELWNGRFAMIGLVALAATEII 159
>ELI9_HORVU (P14897) Low molecular mass early light-inducible protein HV90,| chloroplast precursor (ELIP) Length = 172 Score = 31.2 bits (69), Expect = 1.4 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Frame = -1 Query: 426 SMVHAPSLLAVQTFRGQRNAATNRSPRAAA-FRVRAAKLPAGVQVPRAQPKLSEPFLG-- 256 +MV + LAV+ RG + S A F A L VP Q + +E G Sbjct: 79 AMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAI 138 Query: 255 FTKTAEVWNSRACMMGLIGTFIVELI 178 AE+WN R M+GL+ E+I Sbjct: 139 MNANAELWNGRFAMLGLVALAATEII 164
>PYRD_COXBU (Q83CY0) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 347 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/67 (28%), Positives = 30/67 (44%) Frame = -1 Query: 315 LPAGVQVPRAQPKLSEPFLGFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEIIGFEVG 136 + G P+ QP S+P + A +R L ++VE + + V I+G +G Sbjct: 82 IEVGAVTPKPQPGNSKPRIFRLPQARALINRMGFNNLGVDYLVEQLKRRKVKGIVGVNIG 141 Query: 135 KGLDIPL 115 K L PL Sbjct: 142 KNLTTPL 148
>HEMH_PROMM (Q7V6C6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -1 Query: 258 GFTKTAEVWNSRACMMGLIGTFIVELILHKGVLEIIG 148 G ++E WN R M+G F++ELI G L IG Sbjct: 354 GLNTSSEAWNGRIAMLG-FAAFLLELISGHGPLHAIG 389
>CPT1C_MOUSE (Q8BGD5) Carnitine O-palmitoyltransferase I, brain isoform (EC| 2.3.1.21) (Carnitine palmitoyltransferase 1C) (CPT IC) Length = 798 Score = 30.0 bits (66), Expect = 3.1 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 12/63 (19%) Frame = +2 Query: 293 GTWTPAGSLAARTLK------------AAALGERLVAAFLCPRKVWTARRDGA*TMEATA 436 GT +P G L+ R L+ A L E L A PR +W R+ T ATA Sbjct: 344 GTHSPNGLLSPRALEQQFQDILDDPSPACPLEEHLAALTAAPRSMWAQVRESVKTHAATA 403 Query: 437 IGA 445 + A Sbjct: 404 LEA 406
>SMOK_RHOSH (P54933) ATP-binding transport protein smoK (Protein polK)| Length = 332 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = +1 Query: 226 GVPDLGRLGEPEER---LTQLGLRPRHLDSGRELGCPDSESGRS 348 G P + + PE T +G+RP H+D RE G + E G S Sbjct: 235 GSPKMNLIEGPEAAKHGATTIGIRPEHIDLSREAGAWEGEVGVS 278
>TSSC4_HUMAN (Q9Y5U2) Protein TSSC4 (Tumor-suppressing subchromosomal| transferable fragment candidate gene 4 protein) (Tumor-suppressing STF cDNA 4 protein) Length = 329 Score = 29.3 bits (64), Expect = 5.3 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = +1 Query: 193 EGPDE-SHHAGPGVPDLGRLGEPEERLTQLGLRPRHLDSGRELGCPDSES 339 EGP E +H AGPG P+ G P L ++ + SG G P E+ Sbjct: 252 EGPVELAHLAGPGSPEAEEWGSPHGGLQEVEALSGSVHSGSVPGLPPVET 301
>YL062_MIMIV (Q5UPE3) Putative ankyrin repeat protein L62| Length = 252 Score = 29.3 bits (64), Expect = 5.3 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -1 Query: 228 SRACMMGLIGTFIVELILHKGVLEIIGFEVGKGLDI 121 S+ C + LIG V+ + G LEII + V +G D+ Sbjct: 7 SKGCDISLIGDVAVQYACYGGHLEIIKYLVSQGADV 42
>Y4NJ_RHISN (P55582) Hypothetical GMC-type oxidoreductase y4nJ| Length = 505 Score = 28.9 bits (63), Expect = 6.9 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Frame = -1 Query: 363 TNRSPRAAAFRVRAAKL----PAGVQVPRAQPKLSEPFLGFTKTAEVWNSRACMMGLIGT 196 TNR A+R+ + P GV R P ++EP + F E W S ++ L+G Sbjct: 327 TNRGDLMQAWRLCGSYYGMIRPRGVGSVRPLPGINEPLVSFKLAPEDWISLGQVLTLLGQ 386 Query: 195 FIVELILHKGVLEIIGFE 142 + K + I G E Sbjct: 387 AMFAAGARKVIPSISGHE 404
>BIOH_NEIG1 (Q5F641) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis| protein bioH) Length = 258 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +1 Query: 142 FETDYLKNT--FVQYQLHDEGPDESHHAGPGVPDLGRLGEPE 261 F TDY K+ F+Q QL PD + G +PDL R G P+ Sbjct: 134 FRTDYAKHIKQFLQLQLLHT-PDAAEIIGRILPDLARCGTPQ 174
>AREA_ASPNG (O13412) Nitrogen regulatory protein areA| Length = 882 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/86 (22%), Positives = 36/86 (41%) Frame = +1 Query: 103 ESKLQRNIEAFPHFETDYLKNTFVQYQLHDEGPDESHHAGPGVPDLGRLGEPEERLTQLG 282 +++ QR + + T L + + ++ D+SHH G + G P Sbjct: 430 DARTQRRVPNYVSHRTSNLSASLQPRYMFNQNQDQSHHTGNHSSSMHSPGYPIP------ 483 Query: 283 LRPRHLDSGRELGCPDSESGRSR*AV 360 +P+H+D + L D +G S A+ Sbjct: 484 -QPQHVDPTQVLNPNDFSTGASHAAM 508
>MAK5_KLULA (Q6CTN7) ATP-dependent RNA helicase MAK5 (EC 3.6.1.-)| Length = 796 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = -3 Query: 241 RGLELQGLHDGTHRDLHRGADIAQRCS*DNRFRSGERPRYSFVVCSPSLPM 89 RGL++ G+ H L R AD+ S R G+ S ++CSP M Sbjct: 580 RGLDISGIKHVLHYHLPRSADVYIHRS--GRTARGDNEGVSVMICSPQESM 628
>GUAA_RHORT (Q2RXI5) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 525 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = +1 Query: 205 ESHHAGPGVPDLGRLG--EPEERLTQLGLRPRHLDSGRELGCPDSESGR 345 +SHH G+P+ ++ EP L + +R D GRELG PD GR Sbjct: 355 KSHHNVGGLPERMKMALVEPLRELFKDEVR----DLGRELGLPDEMVGR 399
>TNIK_HUMAN (Q9UKE5) TRAF2 and NCK-interacting kinase (EC 2.7.11.1)| Length = 1360 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/41 (39%), Positives = 18/41 (43%) Frame = -3 Query: 421 GSCTISPSSPDLPRTEECCH*PLTESGRFQSPGSQAPCRSP 299 GS I S+PDL RTE PL + S S P P Sbjct: 700 GSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQP 740
>MNTH_BRUSU (P65545) Probable manganese transport protein mntH| Length = 456 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Frame = -1 Query: 300 QVPRAQPKLSEPFLGFTKTAEVWNSRACM---MGLIGTFIV--ELILHKGVLE 157 Q+ AQP+ E GF T E+ ++ + +G+IG ++ L LH G+++ Sbjct: 200 QIIMAQPQWGEVIKGFAPTTEIVSNPDMLYIALGIIGATVMPHNLYLHSGIVQ 252
>MNTH_BRUME (P65544) Probable manganese transport protein mntH| Length = 456 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Frame = -1 Query: 300 QVPRAQPKLSEPFLGFTKTAEVWNSRACM---MGLIGTFIV--ELILHKGVLE 157 Q+ AQP+ E GF T E+ ++ + +G+IG ++ L LH G+++ Sbjct: 200 QIIMAQPQWGEVIKGFAPTTEIVSNPDMLYIALGIIGATVMPHNLYLHSGIVQ 252
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +2 Query: 131 PFPTSKPIISRTPLCNISSTMKVPMSPIMQALEFQTSAVLVNPRNGSLSLGCA 289 P PTS P +S L + ++T +PMS E +SA+ P + +S A Sbjct: 1463 PLPTSFPTLSFGSLLSSATTPSLPMSAGRSTEEATSSALPEKPGDSEVSASAA 1515 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,564,803 Number of Sequences: 219361 Number of extensions: 1577305 Number of successful extensions: 4525 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4523 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)