ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4i01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY090544.1| Deschampsia antarctica clone Dacor 0.63. one heli... 272 1e-69
2dbj|AK120556.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
3gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome... 109 8e-21
4gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome... 109 8e-21
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
6dbj|AK059562.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
9emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa... 107 3e-20
10gb|AY105960.1| Zea mays PCO106742 mRNA sequence 100 8e-18
11gb|AC061965.16| Homo sapiens chromosome 15, clone RP11-37J13, co... 44 0.41
12emb|AJ810175.1| Beta vulgaris pal gene for phenylalanine ammonia... 44 0.41
13gb|AC161120.5| Mus musculus BAC clone RP23-84A2 from chromosome ... 42 1.6
14gb|AC151846.3| Mus musculus BAC clone RP23-13B8 from chromosome ... 42 1.6
15gb|AC166992.2| Mus musculus BAC clone RP24-144F18 from chromosom... 42 1.6
16gb|AC161371.4| Mus musculus BAC clone RP23-402N3 from chromosome... 42 1.6
17gb|AC113068.9| Mus musculus chromosome 1, clone RP23-269F19, com... 42 1.6
18gb|AC119158.10| Mus musculus chromosome 19, clone RP23-434C14, c... 42 1.6
19emb|CR352218.7| Zebrafish DNA sequence from clone DKEYP-118G5 in... 42 1.6
20gb|AC105024.8| Homo sapiens chromosome 17, clone CTD-2132N18, co... 42 1.6
21emb|BX537351.16| Zebrafish DNA sequence from clone DKEYP-84B10 i... 42 1.6
22gb|AC108747.5| Homo sapiens 3 BAC RP11-268E23 (Roswell Park Canc... 42 1.6
23gb|AC087114.7| Mus musculus Strain C57BL6/J Chromosome 10 RP23-3... 42 1.6
24emb|AL954308.12| Zebrafish DNA sequence from clone DKEY-13J15 in... 42 1.6
25dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 42 1.6
26gb|AF082186.3|AF082186 Mus musculus proteinase-3 and neutrophil ... 42 1.6
27emb|BX004769.9| Zebrafish DNA sequence from clone DKEY-15I8 in l... 42 1.6
28emb|BX664748.8| Zebrafish DNA sequence from clone DKEY-3N7 in li... 42 1.6
29gb|AC117808.8| Mus musculus chromosome 1, clone RP24-570C24, com... 42 1.6
30gb|AC003104.1|AC003104 Homo sapiens chromosome 17, clone HCIT48C... 42 1.6
31emb|AL593855.9| Mouse DNA sequence from clone RP23-329H3 on chro... 42 1.6
32gb|AC149778.2| Bos taurus BAC CH240-9E7 (Children's Hospital Oa... 40 6.4
33gb|AC099596.6| Mus musculus chromosome 15, clone RP23-26P23, com... 40 6.4
34gb|AC134530.3| Mus musculus BAC clone RP24-507K16 from chromosom... 40 6.4
35gb|AY122879.1| Gorilla gorilla clone KIR2DLc natural killer cell... 40 6.4
36gb|AC146001.2| Pan troglodytes BAC clone RP43-148A6 from 7, comp... 40 6.4
37gb|AC125108.3| Mus musculus BAC clone RP24-226A8 from chromosome... 40 6.4
38gb|AC007164.3| Homo sapiens BAC clone RP11-304A10 from 7, comple... 40 6.4
39gb|AC145331.19| Medicago truncatula clone mth2-8o7, complete seq... 40 6.4
40gb|AC147471.14| Medicago truncatula clone mth2-7a7, complete seq... 40 6.4
41gb|AC164158.3| Mus musculus BAC clone RP24-263G24 from chromosom... 40 6.4
42gb|AE014817.1| Plasmodium falciparum 3D7 chromosome 14 section 2... 40 6.4
43gb|AE014837.1| Plasmodium falciparum 3D7 chromosome 11 section 2... 40 6.4
44gb|AC158907.2| Mus musculus chromosome 15, clone RP24-266D22, co... 40 6.4
45emb|CR380947.1| Candida glabrata strain CBS138 chromosome A comp... 40 6.4
46gb|AC131953.1| Homo sapiens BAC clone RP11-632F7 from 4, complet... 40 6.4
47emb|AL929442.9| Mouse DNA sequence from clone RP23-95M20 on chro... 40 6.4
48emb|BX248402.13| Zebrafish DNA sequence from clone CH211-226P14 ... 40 6.4
49gb|AC087385.5| Homo sapiens chromosome 15, clone RP11-745A24, co... 40 6.4
50gb|AC107241.4| Homo sapiens chromosome 15, clone CTD-2501E16, co... 40 6.4
51gb|AC099782.2| Homo sapiens chromosome 3 clone RP11-852E15, comp... 40 6.4
52gb|AC011354.4|AC011354 Homo sapiens chromosome 5 clone CTC-354F1... 40 6.4
53emb|BX322541.12| Zebrafish DNA sequence from clone DKEY-78P10 in... 40 6.4
54emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, c... 40 6.4
55emb|BX537289.6| Zebrafish DNA sequence from clone DKEY-35M8 in l... 40 6.4
56emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in ... 40 6.4
57dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
58gb|AC007764.2|AC007764 Genomic sequence for Arabidopsis thaliana... 40 6.4
59gb|AE004680.1| Pseudomonas aeruginosa PAO1, section 241 of 529 o... 40 6.4
60gb|AC113174.3| Homo sapiens chromosome 1 clone RP11-397A15, comp... 40 6.4
61gb|AC124758.6| Mus musculus BAC clone RP23-123I10 from chromosom... 40 6.4
62gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosom... 40 6.4
63dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 6.4
64dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
65emb|AL954171.10| Zebrafish DNA sequence from clone CH211-284B7 i... 40 6.4
66gb|AC157756.1| Mus musculus 10 BAC RP24-377M12 (Roswell Park Can... 40 6.4
67emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, com... 40 6.4
68gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, compl... 40 6.4
69emb|AL845171.5| Mouse DNA sequence from clone RP23-38N8 on chrom... 40 6.4 
>gb|AY090544.1| Deschampsia antarctica clone Dacor 0.63. one helix protein mRNA,
           complete cds
          Length = 634

 Score =  272 bits (137), Expect = 1e-69
 Identities = 206/229 (89%)
 Strand = Plus / Minus

                                                                       
Query: 110 aactacaaaggaatatcgaggcctttccccacttcgaaaccgattatctcaagaacacct 169
           |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 375 aactacaaaggaatgtcgaggcctttccccatttcgaaaccaattatctcaagaacacct 316

                                                                       
Query: 170 ttgtgcaatatcagctccacgatgaaggtcccgatgagtcccatcatgcaggccctggag 229
           |||| ||  |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 315 ttgttcagaatcagctcaacgatgaaggtcccgatgagacccatcatgcaggccctggag 256

                                                                       
Query: 230 ttccagacctcggccgtcttggtgaacccgaggaacggctcactcagcttgggctgcgcc 289
           ||||||||||| || ||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 255 ttccagacctccgcggtcttggtgaaacctaggaatggctcactcagcttgggctgcgcc 196

                                                            
Query: 290 cgcggcacctggactccggcagggagcttggctgcccggactctgaaag 338
           |  ||||| || ||||| ||||| |||||  | |||| |||||||||||
Sbjct: 195 cttggcacttgaactcctgcaggaagcttcacagccctgactctgaaag 147
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>dbj|AK120556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131C05, full
           insert sequence
          Length = 582

 Score =  121 bits (61), Expect = 2e-24
 Identities = 148/177 (83%)
 Strand = Plus / Minus

                                                                       
Query: 110 aactacaaaggaatatcgaggcctttccccacttcgaaaccgattatctcaagaacacct 169
           |||||||  |||| |||||| |||||||||||||| |  || ||| ||| ||||||||| 
Sbjct: 370 aactacagtggaagatcgagtcctttccccacttccagtccaattgtctgaagaacaccc 311

                                                                       
Query: 170 ttgtgcaatatcagctccacgatgaaggtcccgatgagtcccatcatgcaggccctggag 229
           |||  ||  | ||||||||| |||||   ||| ||||| || |||||||||||||| |||
Sbjct: 310 ttgctcagcaccagctccacaatgaaaaccccaatgagaccaatcatgcaggccctagag 251

                                                                    
Query: 230 ttccagacctcggccgtcttggtgaacccgaggaacggctcactcagcttgggctgc 286
           ||||| ||||| || |||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 250 ttccaaacctctgcagtcttggtgaaccctaggaatggctcactcagcttgggctgc 194
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>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OSJNBa0034M22, complete sequence
          Length = 149435

 Score =  109 bits (55), Expect = 8e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                         
Query: 181   cagctccacgatgaaggtcccgatgagtcccatcatgcaggccctggagttccagacctc 240
             |||||||||||||||||| || ||||| || ||||||||||||||||||||||| | |||
Sbjct: 60489 cagctccacgatgaaggtgccaatgaggccaatcatgcaggccctggagttccatatctc 60430

                                                                        
Query: 241   ggccgtcttggtgaacccgaggaacggctcactcagcttgggctgcgcccgcggcacct 299
              || ||| ||||||| || ||||| |||||||||||||| ||||||  || ||||||||
Sbjct: 60429 tgcagtcctggtgaaacccaggaagggctcactcagctttggctgcttcctcggcacct 60371
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>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07,
              complete sequence
          Length = 136858

 Score =  109 bits (55), Expect = 8e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                          
Query: 181    cagctccacgatgaaggtcccgatgagtcccatcatgcaggccctggagttccagacctc 240
              |||||||||||||||||| || ||||| || ||||||||||||||||||||||| | |||
Sbjct: 133317 cagctccacgatgaaggtgccaatgaggccaatcatgcaggccctggagttccatatctc 133258

                                                                         
Query: 241    ggccgtcttggtgaacccgaggaacggctcactcagcttgggctgcgcccgcggcacct 299
               || ||| ||||||| || ||||| |||||||||||||| ||||||  || ||||||||
Sbjct: 133257 tgcagtcctggtgaaacccaggaagggctcactcagctttggctgcttcctcggcacct 133199
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  109 bits (55), Expect = 8e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                            
Query: 181      cagctccacgatgaaggtcccgatgagtcccatcatgcaggccctggagttccagacctc 240
                |||||||||||||||||| || ||||| || ||||||||||||||||||||||| | |||
Sbjct: 12763030 cagctccacgatgaaggtgccaatgaggccaatcatgcaggccctggagttccatatctc 12762971

                                                                           
Query: 241      ggccgtcttggtgaacccgaggaacggctcactcagcttgggctgcgcccgcggcacct 299
                 || ||| ||||||| || ||||| |||||||||||||| ||||||  || ||||||||
Sbjct: 12762970 tgcagtcctggtgaaacccaggaagggctcactcagctttggctgcttcctcggcacct 12762912
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>dbj|AK059562.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H03, full
           insert sequence
          Length = 551

 Score =  109 bits (55), Expect = 8e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                       
Query: 181 cagctccacgatgaaggtcccgatgagtcccatcatgcaggccctggagttccagacctc 240
           |||||||||||||||||| || ||||| || ||||||||||||||||||||||| | |||
Sbjct: 343 cagctccacgatgaaggtgccaatgaggccaatcatgcaggccctggagttccatatctc 284

                                                                      
Query: 241 ggccgtcttggtgaacccgaggaacggctcactcagcttgggctgcgcccgcggcacct 299
            || ||| ||||||| || ||||| |||||||||||||| ||||||  || ||||||||
Sbjct: 283 tgcagtcctggtgaaacccaggaagggctcactcagctttggctgcttcctcggcacct 225
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  107 bits (54), Expect = 3e-20
 Identities = 93/106 (87%)
 Strand = Plus / Minus

                                                                            
Query: 181      cagctccacgatgaaggtcccgatgagtcccatcatgcaggccctggagttccagacctc 240
                ||||||||| |||||   ||| ||||| || |||||||||||||| |||||||| |||||
Sbjct: 17665800 cagctccacaatgaaaaccccaatgagaccaatcatgcaggccctagagttccaaacctc 17665741

                                                              
Query: 241      ggccgtcttggtgaacccgaggaacggctcactcagcttgggctgc 286
                 || |||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 17665740 tgcagtcttggtgaaccctaggaatggctcactcagcttgggctgc 17665695
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  107 bits (54), Expect = 3e-20
 Identities = 93/106 (87%)
 Strand = Plus / Minus

                                                                            
Query: 181      cagctccacgatgaaggtcccgatgagtcccatcatgcaggccctggagttccagacctc 240
                ||||||||| |||||   ||| ||||| || |||||||||||||| |||||||| |||||
Sbjct: 17620171 cagctccacaatgaaaaccccaatgagaccaatcatgcaggccctagagttccaaacctc 17620112

                                                              
Query: 241      ggccgtcttggtgaacccgaggaacggctcactcagcttgggctgc 286
                 || |||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 17620111 tgcagtcttggtgaaccctaggaatggctcactcagcttgggctgc 17620066
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>emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 162200

 Score =  107 bits (54), Expect = 3e-20
 Identities = 93/106 (87%)
 Strand = Plus / Minus

                                                                          
Query: 181    cagctccacgatgaaggtcccgatgagtcccatcatgcaggccctggagttccagacctc 240
              ||||||||| |||||   ||| ||||| || |||||||||||||| |||||||| |||||
Sbjct: 158136 cagctccacaatgaaaaccccaatgagaccaatcatgcaggccctagagttccaaacctc 158077

                                                            
Query: 241    ggccgtcttggtgaacccgaggaacggctcactcagcttgggctgc 286
               || |||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 158076 tgcagtcttggtgaaccctaggaatggctcactcagcttgggctgc 158031
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>gb|AY105960.1| Zea mays PCO106742 mRNA sequence
          Length = 750

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 92/106 (86%)
 Strand = Plus / Minus

                                                                       
Query: 181 cagctccacgatgaaggtcccgatgagtcccatcatgcaggccctggagttccagacctc 240
           ||||||||| |||||||| |||||||| || ||||||||||||||||||||||| | |||
Sbjct: 484 cagctccacaatgaaggtgccgatgaggccgatcatgcaggccctggagttccaaatctc 425

                                                         
Query: 241 ggccgtcttggtgaacccgaggaacggctcactcagcttgggctgc 286
            || |||| ||||||||| | ||| ||||| |||||||| ||||||
Sbjct: 424 cgcggtctgggtgaaccccaagaagggctcgctcagcttcggctgc 379
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>gb|AC061965.16| Homo sapiens chromosome 15, clone RP11-37J13, complete sequence
          Length = 169399

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 85    catccataggcaaagagggaga 106
             ||||||||||||||||||||||
Sbjct: 93518 catccataggcaaagagggaga 93497
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>emb|AJ810175.1| Beta vulgaris pal gene for phenylalanine ammonia lyase, exons 1-2
          Length = 13672

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 9    tatatatttatttactatgatg 30
            ||||||||||||||||||||||
Sbjct: 9265 tatatatttatttactatgatg 9244
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>gb|AC161120.5| Mus musculus BAC clone RP23-84A2 from chromosome 10, complete sequence
          Length = 214638

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     ttgtttatatatttatttact 24
             |||||||||||||||||||||
Sbjct: 50971 ttgtttatatatttatttact 50991
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>gb|AC151846.3| Mus musculus BAC clone RP23-13B8 from chromosome 10, complete sequence
          Length = 252639

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      ttgtttatatatttatttact 24
              |||||||||||||||||||||
Sbjct: 114437 ttgtttatatatttatttact 114417
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>gb|AC166992.2| Mus musculus BAC clone RP24-144F18 from chromosome 9, complete sequence
          Length = 193799

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     ttgtttatatatttatttact 24
             |||||||||||||||||||||
Sbjct: 34804 ttgtttatatatttatttact 34824
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>gb|AC161371.4| Mus musculus BAC clone RP23-402N3 from chromosome 9, complete sequence
          Length = 203708

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     ttgtttatatatttatttact 24
             |||||||||||||||||||||
Sbjct: 17559 ttgtttatatatttatttact 17539
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>gb|AC113068.9| Mus musculus chromosome 1, clone RP23-269F19, complete sequence
          Length = 188836

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 5     tgtttatatatttatttactatgat 29
             |||| ||||||||||||||||||||
Sbjct: 21270 tgttcatatatttatttactatgat 21294
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>gb|AC119158.10| Mus musculus chromosome 19, clone RP23-434C14, complete sequence
          Length = 209459

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      ttgtttatatatttatttact 24
              |||||||||||||||||||||
Sbjct: 142331 ttgtttatatatttatttact 142311
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>emb|CR352218.7| Zebrafish DNA sequence from clone DKEYP-118G5 in linkage group 23,
              complete sequence
          Length = 124382

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 2      gcttgtttatatatttattta 22
              |||||||||||||||||||||
Sbjct: 107647 gcttgtttatatatttattta 107627
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>gb|AC105024.8| Homo sapiens chromosome 17, clone CTD-2132N18, complete sequence
          Length = 147662

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 425    gaggccacagccattggtgca 445
              |||||||||||||||||||||
Sbjct: 135935 gaggccacagccattggtgca 135955
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>emb|BX537351.16| Zebrafish DNA sequence from clone DKEYP-84B10 in linkage group 17,
              complete sequence
          Length = 161005

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      gcttgtttatatatttattta 22
              |||||||||||||||||||||
Sbjct: 140090 gcttgtttatatatttattta 140110
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>gb|AC108747.5| Homo sapiens 3 BAC RP11-268E23 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 46509

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 4    ttgtttatatatttatttact 24
            |||||||||||||||||||||
Sbjct: 2291 ttgtttatatatttatttact 2311
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>gb|AC087114.7| Mus musculus Strain C57BL6/J Chromosome 10 RP23-309M23, complete
             sequence
          Length = 185825

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     ttgtttatatatttatttact 24
             |||||||||||||||||||||
Sbjct: 41866 ttgtttatatatttatttact 41886
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>emb|AL954308.12| Zebrafish DNA sequence from clone DKEY-13J15 in linkage group 4, complete
              sequence
          Length = 223608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      gcttgtttatatatttattta 22
              |||||||||||||||||||||
Sbjct: 140582 gcttgtttatatatttattta 140602
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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 189    cgatgaaggtcccgatgagtcccat 213
              ||||||||| |||||||||||||||
Sbjct: 968445 cgatgaaggccccgatgagtcccat 968421
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>gb|AF082186.3|AF082186 Mus musculus proteinase-3 and neutrophil elastase genes, complete cds
          Length = 8741

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 4    ttgtttatatatttatttact 24
            |||||||||||||||||||||
Sbjct: 6093 ttgtttatatatttatttact 6113
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>emb|BX004769.9| Zebrafish DNA sequence from clone DKEY-15I8 in linkage group 9,
            complete sequence
          Length = 154745

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 7    tttatatatttatttactatg 27
            |||||||||||||||||||||
Sbjct: 2634 tttatatatttatttactatg 2654
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>emb|BX664748.8| Zebrafish DNA sequence from clone DKEY-3N7 in linkage group 4, complete
             sequence
          Length = 206047

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     gcttgtttatatatttattta 22
             |||||||||||||||||||||
Sbjct: 56627 gcttgtttatatatttattta 56647
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>gb|AC117808.8| Mus musculus chromosome 1, clone RP24-570C24, complete sequence
          Length = 189713

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 5     tgtttatatatttatttactatgat 29
             |||| ||||||||||||||||||||
Sbjct: 36532 tgttcatatatttatttactatgat 36508
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>gb|AC003104.1|AC003104 Homo sapiens chromosome 17, clone HCIT48C15, complete sequence
          Length = 100635

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 425   gaggccacagccattggtgca 445
             |||||||||||||||||||||
Sbjct: 24154 gaggccacagccattggtgca 24134
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>emb|AL593855.9| Mouse DNA sequence from clone RP23-329H3 on chromosome 1, complete
             sequence
          Length = 177918

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     ttgtttatatatttatttact 24
             |||||||||||||||||||||
Sbjct: 32480 ttgtttatatatttatttact 32460
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>gb|AC149778.2| Bos taurus  BAC CH240-9E7 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 138869

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tttatatatttatttactat 26
             ||||||||||||||||||||
Sbjct: 80327 tttatatatttatttactat 80346
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>gb|AC099596.6| Mus musculus chromosome 15, clone RP23-26P23, complete sequence
          Length = 210022

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      tttatatatttatttactat 26
              ||||||||||||||||||||
Sbjct: 176755 tttatatatttatttactat 176736
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>gb|AC134530.3| Mus musculus BAC clone RP24-507K16 from chromosome 5, complete sequence
          Length = 215112

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 4      ttgtttatatatttatttactatg 27
              |||||||| |||||||||||||||
Sbjct: 186565 ttgtttatttatttatttactatg 186542
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>gb|AY122879.1| Gorilla gorilla clone KIR2DLc natural killer cell immunoglobulin-like
            receptor gene, partial sequence
          Length = 1167

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  gtcccatcatgcaggccctg 226
            ||||||||||||||||||||
Sbjct: 1040 gtcccatcatgcaggccctg 1059
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>gb|AC146001.2| Pan troglodytes BAC clone RP43-148A6 from 7, complete sequence
          Length = 154218

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     gcttgtttatatatttattt 21
             ||||||||||||||||||||
Sbjct: 87718 gcttgtttatatatttattt 87737
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>gb|AC125108.3| Mus musculus BAC clone RP24-226A8 from chromosome 10, complete sequence
          Length = 148202

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 98    agagggagagcaaactacaaagga 121
             ||||||||||||||||| ||||||
Sbjct: 29605 agagggagagcaaactataaagga 29582
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>gb|AC007164.3| Homo sapiens BAC clone RP11-304A10 from 7, complete sequence
          Length = 89862

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     gcttgtttatatatttattt 21
             ||||||||||||||||||||
Sbjct: 62096 gcttgtttatatatttattt 62077
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>gb|AC145331.19| Medicago truncatula clone mth2-8o7, complete sequence
          Length = 115348

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    tcatgtggctcttatactatcatc 85
             |||||| |||||||||||||||||
Sbjct: 71129 tcatgtagctcttatactatcatc 71106
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>gb|AC147471.14| Medicago truncatula clone mth2-7a7, complete sequence
          Length = 139792

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 62    tcatgtggctcttatactatcatc 85
             |||||| |||||||||||||||||
Sbjct: 13963 tcatgtagctcttatactatcatc 13986
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>gb|AC164158.3| Mus musculus BAC clone RP24-263G24 from chromosome 7, complete sequence
          Length = 200983

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    agcaaactacaaaggaatat 125
              ||||||||||||||||||||
Sbjct: 185607 agcaaactacaaaggaatat 185588
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>gb|AE014817.1| Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete
             sequence
          Length = 254449

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     tgtttatatatttatttact 24
             ||||||||||||||||||||
Sbjct: 63641 tgtttatatatttatttact 63622
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>gb|AE014837.1| Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete
             sequence
          Length = 257757

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tttatatatttatttactat 26
             ||||||||||||||||||||
Sbjct: 73295 tttatatatttatttactat 73314
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>gb|AC158907.2| Mus musculus chromosome 15, clone RP24-266D22, complete sequence
          Length = 146781

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     tttatatatttatttactat 26
             ||||||||||||||||||||
Sbjct: 13119 tttatatatttatttactat 13100
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>emb|CR380947.1| Candida glabrata strain CBS138 chromosome A complete sequence
          Length = 485192

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      cttgtttatatatttattta 22
              ||||||||||||||||||||
Sbjct: 374073 cttgtttatatatttattta 374092
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>gb|AC131953.1| Homo sapiens BAC clone RP11-632F7 from 4, complete sequence
          Length = 133973

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     tgtttatatatttatttact 24
             ||||||||||||||||||||
Sbjct: 57351 tgtttatatatttatttact 57332
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>emb|AL929442.9| Mouse DNA sequence from clone RP23-95M20 on chromosome 4, complete
              sequence
          Length = 176578

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      ttgtttatatatttatttac 23
              ||||||||||||||||||||
Sbjct: 148937 ttgtttatatatttatttac 148956
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>emb|BX248402.13| Zebrafish DNA sequence from clone CH211-226P14 in linkage group 14,
              complete sequence
          Length = 137130

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      ttgtttatatatttatttac 23
              ||||||||||||||||||||
Sbjct: 130574 ttgtttatatatttatttac 130555
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>gb|AC087385.5| Homo sapiens chromosome 15, clone RP11-745A24, complete sequence
          Length = 190890

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 221  gccctggagttccagacctc 240
            ||||||||||||||||||||
Sbjct: 6999 gccctggagttccagacctc 7018
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>gb|AC107241.4| Homo sapiens chromosome 15, clone CTD-2501E16, complete sequence
          Length = 105583

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   gccctggagttccagacctc 240
             ||||||||||||||||||||
Sbjct: 79985 gccctggagttccagacctc 80004
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>gb|AC099782.2| Homo sapiens chromosome 3 clone RP11-852E15, complete sequence
          Length = 209772

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     aaccttctcatgtggctctt 74
              ||||||||||||||||||||
Sbjct: 128378 aaccttctcatgtggctctt 128359
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>gb|AC011354.4|AC011354 Homo sapiens chromosome 5 clone CTC-354F19, complete sequence
          Length = 133042

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 4     ttgtttatatatttatttactatg 27
             |||||||| |||||||||||||||
Sbjct: 63452 ttgtttatttatttatttactatg 63475
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>emb|BX322541.12| Zebrafish DNA sequence from clone DKEY-78P10 in linkage group 5,
             complete sequence
          Length = 227940

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     cttgtttatatatttattta 22
             ||||||||||||||||||||
Sbjct: 87291 cttgtttatatatttattta 87272
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>emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, complete sequence
          Length = 201461

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ttgtttatatatttatttac 23
             ||||||||||||||||||||
Sbjct: 82926 ttgtttatatatttatttac 82945
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>emb|BX537289.6| Zebrafish DNA sequence from clone DKEY-35M8 in linkage group 5,
             complete sequence
          Length = 135274

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     cttgtttatatatttattta 22
             ||||||||||||||||||||
Sbjct: 30125 cttgtttatatatttattta 30106
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>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8, complete
              sequence
          Length = 272840

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      cttgtttatatatttattta 22
              ||||||||||||||||||||
Sbjct: 188773 cttgtttatatatttattta 188754
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 14       atttatttactatgatgcat 33
                ||||||||||||||||||||
Sbjct: 21419856 atttatttactatgatgcat 21419837
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>gb|AC007764.2|AC007764 Genomic sequence for Arabidopsis thaliana BAC F22C12 from chromosome I,
             complete sequence
          Length = 111222

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     cttgtttatatatttattta 22
             ||||||||||||||||||||
Sbjct: 36992 cttgtttatatatttattta 37011
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>gb|AE004680.1| Pseudomonas aeruginosa PAO1, section 241 of 529 of the complete
            genome
          Length = 12370

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  ccatcatgcaggccctggag 229
            ||||||||||||||||||||
Sbjct: 2349 ccatcatgcaggccctggag 2330
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>gb|AC113174.3| Homo sapiens chromosome 1 clone RP11-397A15, complete sequence
          Length = 175470

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     cttgtttatatatttattta 22
             ||||||||||||||||||||
Sbjct: 69634 cttgtttatatatttattta 69653
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>gb|AC124758.6| Mus musculus BAC clone RP23-123I10 from chromosome 6, complete sequence
          Length = 216956

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      tttatatatttatttactat 26
              ||||||||||||||||||||
Sbjct: 104500 tttatatatttatttactat 104481
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>gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosome 7, complete sequence
          Length = 166576

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    agcaaactacaaaggaatat 125
              ||||||||||||||||||||
Sbjct: 116172 agcaaactacaaaggaatat 116191
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    gtcttggtgaacccgaggaa 264
              ||||||||||||||||||||
Sbjct: 898860 gtcttggtgaacccgaggaa 898841
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>dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1729_E01
          Length = 155527

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    atttatttactatgatgcat 33
             ||||||||||||||||||||
Sbjct: 63912 atttatttactatgatgcat 63893
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>emb|AL954171.10| Zebrafish DNA sequence from clone CH211-284B7 in linkage group 2,
             complete sequence
          Length = 148854

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ttgtttatatatttatttac 23
             ||||||||||||||||||||
Sbjct: 23803 ttgtttatatatttatttac 23822
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>gb|AC157756.1| Mus musculus 10 BAC RP24-377M12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 180821

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    atctcaagaacacctttgtg 174
              ||||||||||||||||||||
Sbjct: 151645 atctcaagaacacctttgtg 151664
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>emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, complete sequence
          Length = 231383

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     tgtttatatatttatttact 24
             ||||||||||||||||||||
Sbjct: 93627 tgtttatatatttatttact 93608
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>gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, complete sequence
          Length = 174162

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     gcttgtttatatatttattt 21
             ||||||||||||||||||||
Sbjct: 31807 gcttgtttatatatttattt 31826
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>emb|AL845171.5| Mouse DNA sequence from clone RP23-38N8 on chromosome 4, complete
             sequence
          Length = 229784

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 152   attatctcaagaacacctttgtgc 175
             ||||||||||||||| ||||||||
Sbjct: 61837 attatctcaagaacaactttgtgc 61814


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,390,806
Number of Sequences: 3902068
Number of extensions: 4390806
Number of successful extensions: 124450
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124010
Number of HSP's gapped (non-prelim): 439
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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