ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4h16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192267.1| Oryza sativa (japonica cultivar-group), predic... 206 3e-50
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 206 3e-50
3dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic D... 206 3e-50
4dbj|AK065688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 3e-50
5gb|AC158609.10| Mus musculus 6 BAC RP24-89F5 (Roswell Park Cance... 40 4.5
6gb|AC153790.10| Mus musculus chromosome 1, clone RP23-424F11, co... 40 4.5
7gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complet... 40 4.5 
>ref|NM_192267.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1191

 Score =  206 bits (104), Expect = 3e-50
 Identities = 188/216 (87%)
 Strand = Plus / Minus

                                                                        
Query: 127  gcgacctgaaatttctcaggaacacggagcagcggtagctgatagtcaccaggctctcct 186
            |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 1184 gcgacctggaatttctcaggtacacggagcaggggtagctggtagtccccaggctctcct 1125

                                                                        
Query: 187  agctgcccgcaggcagccatctggtcatcgcctctgcttagccgcaccataacggtaagg 246
            ||||| || |||||||||||||| ||||| |||||||| ||||| || |  ||   ||||
Sbjct: 1124 agctgtccacaggcagccatctgatcatcccctctgctgagccgaacaaatacaacaagg 1065

                                                                        
Query: 247  ccagattggattaacatgttacggaactcgataattttctcatcgggcgtcggcttgaac 306
            |||  ||| ||||| |||||||| ||||| |||||||||||||| || || |||||||| 
Sbjct: 1064 ccatcttgaattaaaatgttacgaaactcaataattttctcatcaggagtgggcttgaat 1005

                                                
Query: 307  tgggacccgctatggggattgaaagagatgaggttg 342
            || |||||||||||||||||||||||||||||||||
Sbjct: 1004 tgtgacccgctatggggattgaaagagatgaggttg 969
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  206 bits (104), Expect = 3e-50
 Identities = 188/216 (87%)
 Strand = Plus / Plus

                                                                            
Query: 127      gcgacctgaaatttctcaggaacacggagcagcggtagctgatagtcaccaggctctcct 186
                |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 25746257 gcgacctggaatttctcaggtacacggagcaggggtagctggtagtccccaggctctcct 25746316

                                                                            
Query: 187      agctgcccgcaggcagccatctggtcatcgcctctgcttagccgcaccataacggtaagg 246
                ||||| || |||||||||||||| ||||| |||||||| ||||| || |  ||   ||||
Sbjct: 25746317 agctgtccacaggcagccatctgatcatcccctctgctgagccgaacaaatacaacaagg 25746376

                                                                            
Query: 247      ccagattggattaacatgttacggaactcgataattttctcatcgggcgtcggcttgaac 306
                |||  ||| ||||| |||||||| ||||| |||||||||||||| || || |||||||| 
Sbjct: 25746377 ccatcttgaattaaaatgttacgaaactcaataattttctcatcaggagtgggcttgaat 25746436

                                                    
Query: 307      tgggacccgctatggggattgaaagagatgaggttg 342
                || |||||||||||||||||||||||||||||||||
Sbjct: 25746437 tgtgacccgctatggggattgaaagagatgaggttg 25746472
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>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0039G05
          Length = 138429

 Score =  206 bits (104), Expect = 3e-50
 Identities = 188/216 (87%)
 Strand = Plus / Plus

                                                                         
Query: 127   gcgacctgaaatttctcaggaacacggagcagcggtagctgatagtcaccaggctctcct 186
             |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 48721 gcgacctggaatttctcaggtacacggagcaggggtagctggtagtccccaggctctcct 48780

                                                                         
Query: 187   agctgcccgcaggcagccatctggtcatcgcctctgcttagccgcaccataacggtaagg 246
             ||||| || |||||||||||||| ||||| |||||||| ||||| || |  ||   ||||
Sbjct: 48781 agctgtccacaggcagccatctgatcatcccctctgctgagccgaacaaatacaacaagg 48840

                                                                         
Query: 247   ccagattggattaacatgttacggaactcgataattttctcatcgggcgtcggcttgaac 306
             |||  ||| ||||| |||||||| ||||| |||||||||||||| || || |||||||| 
Sbjct: 48841 ccatcttgaattaaaatgttacgaaactcaataattttctcatcaggagtgggcttgaat 48900

                                                 
Query: 307   tgggacccgctatggggattgaaagagatgaggttg 342
             || |||||||||||||||||||||||||||||||||
Sbjct: 48901 tgtgacccgctatggggattgaaagagatgaggttg 48936
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>dbj|AK065688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042L10, full
            insert sequence
          Length = 1510

 Score =  206 bits (104), Expect = 3e-50
 Identities = 188/216 (87%)
 Strand = Plus / Minus

                                                                        
Query: 127  gcgacctgaaatttctcaggaacacggagcagcggtagctgatagtcaccaggctctcct 186
            |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 1259 gcgacctggaatttctcaggtacacggagcaggggtagctggtagtccccaggctctcct 1200

                                                                        
Query: 187  agctgcccgcaggcagccatctggtcatcgcctctgcttagccgcaccataacggtaagg 246
            ||||| || |||||||||||||| ||||| |||||||| ||||| || |  ||   ||||
Sbjct: 1199 agctgtccacaggcagccatctgatcatcccctctgctgagccgaacaaatacaacaagg 1140

                                                                        
Query: 247  ccagattggattaacatgttacggaactcgataattttctcatcgggcgtcggcttgaac 306
            |||  ||| ||||| |||||||| ||||| |||||||||||||| || || |||||||| 
Sbjct: 1139 ccatcttgaattaaaatgttacgaaactcaataattttctcatcaggagtgggcttgaat 1080

                                                
Query: 307  tgggacccgctatggggattgaaagagatgaggttg 342
            || |||||||||||||||||||||||||||||||||
Sbjct: 1079 tgtgacccgctatggggattgaaagagatgaggttg 1044
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>gb|AC158609.10| Mus musculus 6 BAC RP24-89F5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 217329

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    ctgaaatttctcaggaacac 151
              ||||||||||||||||||||
Sbjct: 143381 ctgaaatttctcaggaacac 143400
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>gb|AC153790.10| Mus musculus chromosome 1, clone RP23-424F11, complete sequence
          Length = 189707

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     ttgtctttatcagattgttc 74
              ||||||||||||||||||||
Sbjct: 138398 ttgtctttatcagattgttc 138379
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>gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complete sequence
          Length = 207908

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 132  ctgaaatttctcaggaacac 151
            ||||||||||||||||||||
Sbjct: 9356 ctgaaatttctcaggaacac 9337


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,277,848
Number of Sequences: 3902068
Number of extensions: 2277848
Number of successful extensions: 36471
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36456
Number of HSP's gapped (non-prelim): 15
length of query: 343
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 321
effective length of database: 17,147,199,772
effective search space: 5504251126812
effective search space used: 5504251126812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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