ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4h04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the 5' end of a novel gene, the gene for a novel protein similar to opioid growth factor receptor and a CpG island, complete sequence Length = 108253 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Minus Query: 141 ttctaaagtggatgcaaaactgaca 165 |||||||||||||||||||| |||| Sbjct: 83740 ttctaaagtggatgcaaaacagaca 83716
>gb|AC005813.13|AC005813 Drosophila melanogaster, chromosome 3R, region 97B2-97B9, BAC clone BACR48G23, complete sequence Length = 166543 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 acacaagataataatataata 90 ||||||||||||||||||||| Sbjct: 158290 acacaagataataatataata 158270
>gb|AC008214.4|AC008214 Drosophila melanogaster, chromosome 3R, region 97B-97C, BAC clone BACR13P17, complete sequence Length = 170403 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 acacaagataataatataata 90 ||||||||||||||||||||| Sbjct: 17793 acacaagataataatataata 17773
>gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94 of 118 of the complete sequence Length = 322332 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 acacaagataataatataata 90 ||||||||||||||||||||| Sbjct: 262050 acacaagataataatataata 262030
>emb|AL929132.9| Mouse DNA sequence from clone RP23-346G8 on chromosome 2, complete sequence Length = 129438 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Plus Query: 66 tgagacacaagataataatataata 90 ||||| ||||||||||||||||||| Sbjct: 86426 tgagatacaagataataatataata 86450
>ref|XM_633680.1| Dictyostelium discoideum hypothetical protein (DDB0185867), partial mRNA Length = 1230 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aagataataatataatacta 93 |||||||||||||||||||| Sbjct: 374 aagataataatataatacta 393
>gb|AE017335.3| Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence Length = 94830 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gcaaaactgacagccaaatt 173 |||||||||||||||||||| Sbjct: 40431 gcaaaactgacagccaaatt 40450
>gb|AF188935.1| Bacillus anthracis plasmid pXO2, complete sequence Length = 96231 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gcaaaactgacagccaaatt 173 |||||||||||||||||||| Sbjct: 40929 gcaaaactgacagccaaatt 40948
>gb|AC105910.10| Homo sapiens chromosome 8, clone CTD-2036J7, complete sequence Length = 190836 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cacaagataataatataata 90 |||||||||||||||||||| Sbjct: 74661 cacaagataataatataata 74642
>gb|AE011191.1| Bacillus anthracis str. A2012 plasmid pXO2, complete sequence Length = 94829 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gcaaaactgacagccaaatt 173 |||||||||||||||||||| Sbjct: 40431 gcaaaactgacagccaaatt 40450
>emb|AL121767.6|CNS01DSC Human chromosome 14 DNA sequence BAC C-2593I21 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 208309 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ataataatataatactacat 96 |||||||||||||||||||| Sbjct: 184642 ataataatataatactacat 184661
>emb|AL133233.2|CNS01DUA Human chromosome 14 DNA sequence BAC R-34O18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168991 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ataataatataatactacat 96 |||||||||||||||||||| Sbjct: 428 ataataatataatactacat 447
>emb|AL807234.6| Mouse DNA sequence from clone RP23-293E12 on chromosome 4, complete sequence Length = 226546 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aacagctgtttatgagacac 73 |||||||||||||||||||| Sbjct: 163278 aacagctgtttatgagacac 163297 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,222,102 Number of Sequences: 3902068 Number of extensions: 2222102 Number of successful extensions: 45536 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45521 Number of HSP's gapped (non-prelim): 15 length of query: 278 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 256 effective length of database: 17,147,199,772 effective search space: 4389683141632 effective search space used: 4389683141632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
