ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_192031.1| Oryza sativa (japonica cultivar-group), predic... 365 1e-97
2dbj|AK120629.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
3dbj|AK063019.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
4gb|AY106215.1| Zea mays PCO086004 mRNA sequence 280 6e-72
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 248 2e-62
6dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic D... 248 2e-62
7dbj|AK062194.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 1e-45
8dbj|AK071536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
9gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, comple... 50 0.010
10gb|AY770501.1| Sesamum indicum microsomal oleic acid desaturase ... 44 0.63
11ref|XM_952035.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.63
12ref|XM_326342.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.63
13gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, comp... 42 2.5
14gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome... 42 2.5
15emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 o... 42 2.5
16gb|DQ366743.1| Uncultured Prochlorococcus marinus clone HOT0M-8F... 42 2.5
17emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete ... 42 2.5
18gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell ... 42 2.5
19gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell... 42 2.5
20dbj|AK165756.1| Mus musculus 15 days embryo brain cDNA, RIKEN fu... 42 2.5
21dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 2.5
22gb|AC157520.2| Mus musculus BAC clone RP23-229N21 from 6, comple... 42 2.5
23gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74... 42 2.5
24gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosom... 42 2.5
25gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, co... 40 9.8
26gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, comp... 40 9.8
27ref|XM_425695.1| PREDICTED: Gallus gallus similar to mannosidase... 40 9.8
28gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, comp... 40 9.8
29gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosom... 40 9.8
30emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chr... 40 9.8
31emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chr... 40 9.8
32gb|AC161447.6| Mus musculus BAC clone RP24-333C14 from chromosom... 40 9.8
33gb|AC091862.3| Homo sapiens chromosome 5 clone CTD-2349K24, comp... 40 9.8
34gb|AC016561.7| Homo sapiens chromosome 5 clone CTC-466C4, comple... 40 9.8
35gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, comp... 40 9.8
36gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park C... 40 9.8
37gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complet... 40 9.8
38gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chrom... 40 9.8
39gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosom... 40 9.8
40gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complet... 40 9.8
41gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, comple... 40 9.8
42gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, compl... 40 9.8
43gb|AC152950.2| Mus musculus 10 BAC RP23-138J18 (Roswell Park Can... 40 9.8

>ref|NM_192031.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 591

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Minus

                                                                       
Query: 295 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 354
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 581 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 522

                                                                       
Query: 355 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 414
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 521 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 462

                                                                       
Query: 415 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 474
           |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 461 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 402

                                                                       
Query: 475 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 534
           |||  |||||| |||||||| |  ||||||||||||||| | |||||||||||||||| |
Sbjct: 401 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 342

                                                                       
Query: 535 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 594
           |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 341 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 282

                               
Query: 595 ctcttcttcaccgagtccgg 614
           |||||||| |||||||||||
Sbjct: 281 ctcttcttgaccgagtccgg 262



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 44/49 (89%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                            
Query: 644 cgcacaccacctgcagccccctcctcctcaaccttccccgtcgacgccg 692
           |||||||||||| ||| |||||||||||| ||| |||||| ||||||||
Sbjct: 226 cgcacaccacctccagtcccctcctcctccacc-tccccgacgacgccg 179



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>dbj|AK120629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153D21, full
           insert sequence
          Length = 915

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Minus

                                                                       
Query: 295 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 354
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 616 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 557

                                                                       
Query: 355 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 414
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 556 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 497

                                                                       
Query: 415 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 474
           |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 496 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 437

                                                                       
Query: 475 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 534
           |||  |||||| |||||||| |  ||||||||||||||| | |||||||||||||||| |
Sbjct: 436 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 377

                                                                       
Query: 535 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 594
           |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 376 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 317

                               
Query: 595 ctcttcttcaccgagtccgg 614
           |||||||| |||||||||||
Sbjct: 316 ctcttcttgaccgagtccgg 297



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 44/49 (89%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                            
Query: 644 cgcacaccacctgcagccccctcctcctcaaccttccccgtcgacgccg 692
           |||||||||||| ||| |||||||||||| ||| |||||| ||||||||
Sbjct: 261 cgcacaccacctccagtcccctcctcctccacc-tccccgacgacgccg 214



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 208 aacatatgc-tgtccaaaattggcaaga 234
           ||||||||| ||||||||||||||||||
Sbjct: 705 aacatatgcatgtccaaaattggcaaga 678



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>dbj|AK063019.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B01, full
           insert sequence
          Length = 727

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Minus

                                                                       
Query: 295 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 354
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 613 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 554

                                                                       
Query: 355 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 414
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 553 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 494

                                                                       
Query: 415 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 474
           |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 493 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 434

                                                                       
Query: 475 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 534
           |||  |||||| |||||||| |  ||||||||||||||| | |||||||||||||||| |
Sbjct: 433 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 374

                                                                       
Query: 535 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 594
           |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 373 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 314

                               
Query: 595 ctcttcttcaccgagtccgg 614
           |||||||| |||||||||||
Sbjct: 313 ctcttcttgaccgagtccgg 294



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 44/49 (89%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                            
Query: 644 cgcacaccacctgcagccccctcctcctcaaccttccccgtcgacgccg 692
           |||||||||||| ||| |||||||||||| ||| |||||| ||||||||
Sbjct: 258 cgcacaccacctccagtcccctcctcctccacc-tccccgacgacgccg 211



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 208 aacatatgc-tgtccaaaattggcaaga 234
           ||||||||| ||||||||||||||||||
Sbjct: 702 aacatatgcatgtccaaaattggcaaga 675



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>gb|AY106215.1| Zea mays PCO086004 mRNA sequence
          Length = 859

 Score =  280 bits (141), Expect = 6e-72
 Identities = 273/317 (86%)
 Strand = Plus / Minus

                                                                       
Query: 299 caggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctccttg 358
           |||||||||| || || |||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 684 caggttcagcgtttgggacataccaaccacggagtatctcgatggccttcttcctccttg 625

                                                                       
Query: 359 caagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcactgtct 418
           | || |  ||||| ||||| |   | || ||||| |||||||||||||||||||| ||||
Sbjct: 624 ccagtcgagacttccgatggttcgccgtgttcctatgcatggcgccaaccttcaccgtct 565

                                                                       
Query: 419 tgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttcaggtt 478
           |||||||||||||||||||||||| |||||  |||||||| ||||| ||||||||||| |
Sbjct: 564 tgtcgatggctttgtatgcctcagcgatcagcttctctatctcaattatttcttcaggct 505

                                                                       
Query: 479 gggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgggtgc 538
           | || || | |||||||| |||||||||||| ||||| || ||||| |||||||  ||||
Sbjct: 504 gcgcgtcaggtttcttcctaagcttttcaagagctcttaagacctttttcatcctagtgc 445

                                                                       
Query: 539 gcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctccctct 598
           |||||||||||||||| || || ||||| ||||||||  |||| ||||||||||||||||
Sbjct: 444 gcatctcggccttgcgcgcgtgattgcggatgcggtgcttgtcgttctggcgctccctct 385

                            
Query: 599 tcttcaccgagtccggc 615
           |||| ||||||||||||
Sbjct: 384 tcttaaccgagtccggc 368



 Score = 44.1 bits (22), Expect = 0.63
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 644 cgcacaccacctgcagccccctcctcctcaaccttccc 681
           |||||||||||| |||||||| ||  ||||||||||||
Sbjct: 348 cgcacaccacctccagcccccgccgtctcaaccttccc 311



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  248 bits (125), Expect = 2e-62
 Identities = 203/229 (88%)
 Strand = Plus / Minus

                                                                            
Query: 295      gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 354
                |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 27917295 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 27917236

                                                                            
Query: 355      cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 414
                || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 27917235 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 27917176

                                                                            
Query: 415      gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 474
                |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 27917175 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 27917116

                                                                 
Query: 475      ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaacct 523
                |||  |||||| |||||||| |  ||||||||||||||| | |||||||
Sbjct: 27917115 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaacct 27917067



 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                            
Query: 520      accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 579
                ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct: 27916044 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 27915985

                                                   
Query: 580      tcattctggcgctccctcttcttcaccgagtccgg 614
                || ||||| |||||||||||||| |||||||||||
Sbjct: 27915984 tcgttctgccgctccctcttcttgaccgagtccgg 27915950



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 44/49 (89%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                                 
Query: 644      cgcacaccacctgcagccccctcctcctcaaccttccccgtcgacgccg 692
                |||||||||||| ||| |||||||||||| ||| |||||| ||||||||
Sbjct: 27915914 cgcacaccacctccagtcccctcctcctccacc-tccccgacgacgccg 27915867



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                            
Query: 208      aacatatgc-tgtccaaaattggcaaga 234
                ||||||||| ||||||||||||||||||
Sbjct: 27917384 aacatatgcatgtccaaaattggcaaga 27917357



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>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1144G04
          Length = 194459

 Score =  248 bits (125), Expect = 2e-62
 Identities = 203/229 (88%)
 Strand = Plus / Minus

                                                                          
Query: 295    gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 354
              |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 103976 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 103917

                                                                          
Query: 355    cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 414
              || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 103916 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 103857

                                                                          
Query: 415    gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 474
              |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 103856 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 103797

                                                               
Query: 475    ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaacct 523
              |||  |||||| |||||||| |  ||||||||||||||| | |||||||
Sbjct: 103796 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaacct 103748



 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                          
Query: 520    accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 579
              ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct: 102725 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 102666

                                                 
Query: 580    tcattctggcgctccctcttcttcaccgagtccgg 614
              || ||||| |||||||||||||| |||||||||||
Sbjct: 102665 tcgttctgccgctccctcttcttgaccgagtccgg 102631



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 44/49 (89%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                               
Query: 644    cgcacaccacctgcagccccctcctcctcaaccttccccgtcgacgccg 692
              |||||||||||| ||| |||||||||||| ||| |||||| ||||||||
Sbjct: 102595 cgcacaccacctccagtcccctcctcctccacc-tccccgacgacgccg 102548



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 208    aacatatgc-tgtccaaaattggcaaga 234
              ||||||||| ||||||||||||||||||
Sbjct: 104065 aacatatgcatgtccaaaattggcaaga 104038



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>dbj|AK062194.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-F06, full
           insert sequence
          Length = 455

 Score =  192 bits (97), Expect = 1e-45
 Identities = 136/149 (91%)
 Strand = Plus / Minus

                                                                       
Query: 295 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 354
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 161 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 102

                                                                       
Query: 355 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 414
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 101 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 42

                                        
Query: 415 gtcttgtcgatggctttgtatgcctcaga 443
           |||||||| ||||||||||||||||||||
Sbjct: 41  gtcttgtcaatggctttgtatgcctcaga 13



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 208 aacatatgc-tgtccaaaattggcaaga 234
           ||||||||| ||||||||||||||||||
Sbjct: 250 aacatatgcatgtccaaaattggcaaga 223



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>dbj|AK071536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N15, full
           insert sequence
          Length = 651

 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                       
Query: 520 accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 579
           ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct: 257 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 198

                                              
Query: 580 tcattctggcgctccctcttcttcaccgagtccgg 614
           || ||||| |||||||||||||| |||||||||||
Sbjct: 197 tcgttctgccgctccctcttcttgaccgagtccgg 163



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 44/49 (89%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                            
Query: 644 cgcacaccacctgcagccccctcctcctcaaccttccccgtcgacgccg 692
           |||||||||||| ||| |||||||||||| ||| |||||| ||||||||
Sbjct: 127 cgcacaccacctccagtcccctcctcctccacc-tccccgacgacgccg 80



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>gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, complete sequence
          Length = 167776

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 333    tatctcaatggccttcttcctcctt 357
              |||||||||||||||||||||||||
Sbjct: 166108 tatctcaatggccttcttcctcctt 166084



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>gb|AY770501.1| Sesamum indicum microsomal oleic acid desaturase gene, complete cds
          Length = 3762

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 50   tatttcggtttgaagttttaca 71
            ||||||||||||||||||||||
Sbjct: 1440 tatttcggtttgaagttttaca 1461



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>ref|XM_952035.1| Neurospora crassa OR74A hypothetical protein (NCU06488.1) partial
            mRNA
          Length = 4368

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 661  cccctcctcctcaaccttccccgtcg 686
            ||||||||||||||||||| ||||||
Sbjct: 4080 cccctcctcctcaaccttctccgtcg 4105



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>ref|XM_326342.1| Neurospora crassa OR74A hypothetical protein (NCU06488.1) partial
            mRNA
          Length = 4368

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 661  cccctcctcctcaaccttccccgtcg 686
            ||||||||||||||||||| ||||||
Sbjct: 4080 cccctcctcctcaaccttctccgtcg 4105



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>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence
          Length = 159182

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 440   cagagatcattttctctattt 460
             |||||||||||||||||||||
Sbjct: 55397 cagagatcattttctctattt 55417



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>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence
          Length = 176667

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 440    cagagatcattttctctattt 460
              |||||||||||||||||||||
Sbjct: 175097 cagagatcattttctctattt 175077



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>emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 on chromosome Xp22.11-22.2
             Contains the 3' end of a novel gene, complete sequence
          Length = 58498

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 336   ctcaatggccttcttcctcct 356
             |||||||||||||||||||||
Sbjct: 13755 ctcaatggccttcttcctcct 13775



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>gb|DQ366743.1| Uncultured Prochlorococcus marinus clone HOT0M-8F9 genomic sequence
          Length = 27928

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 454   tctatttcaatgatttcttca 474
             |||||||||||||||||||||
Sbjct: 18648 tctatttcaatgatttcttca 18668



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>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 630    gggcggctcggcggcgcacaccacc 654
              ||||||||||||||||| |||||||
Sbjct: 204693 gggcggctcggcggcgcgcaccacc 204669



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>gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 184424

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 565  cgaatgcggtgtctgtcattc 585
            |||||||||||||||||||||
Sbjct: 7400 cgaatgcggtgtctgtcattc 7380



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>gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 163098

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 565    cgaatgcggtgtctgtcattc 585
              |||||||||||||||||||||
Sbjct: 144096 cgaatgcggtgtctgtcattc 144076



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>dbj|AK165756.1| Mus musculus 15 days embryo brain cDNA, RIKEN full-length enriched
           library, clone:G630055J19 product:unclassifiable, full
           insert sequence
          Length = 3668

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 646 cacaccacctgcagccccctcctcc 670
           ||||||||||||| |||||||||||
Sbjct: 846 cacaccacctgcacccccctcctcc 822



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 630     gggcggctcggcggcgcacaccacc 654
               ||||||||||||||||| |||||||
Sbjct: 3910496 gggcggctcggcggcgcgcaccacc 3910520



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>gb|AC157520.2| Mus musculus BAC clone RP23-229N21 from 6, complete sequence
          Length = 196037

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 449    ttttctctatttcaatgatttcttc 473
              |||||||||| ||||||||||||||
Sbjct: 166833 ttttctctatgtcaatgatttcttc 166857



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>gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74 of 83 of the complete
              sequence
          Length = 313157

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 565    cgaatgcggtgtctgtcattc 585
              |||||||||||||||||||||
Sbjct: 141281 cgaatgcggtgtctgtcattc 141301



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>gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosome 7, complete sequence
          Length = 249504

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 646    cacaccacctgcagccccctcctcc 670
              ||||||||||||| |||||||||||
Sbjct: 224344 cacaccacctgcacccccctcctcc 224320



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>gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, complete sequence
          Length = 188921

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 454   tctatttcaatgatttcttcaggt 477
             |||||||||||| |||||||||||
Sbjct: 54497 tctatttcaatgttttcttcaggt 54474



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>gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, complete sequence
          Length = 138419

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   aagaaaagctgctgcaattt 262
             ||||||||||||||||||||
Sbjct: 15020 aagaaaagctgctgcaattt 15039



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>ref|XM_425695.1| PREDICTED: Gallus gallus similar to mannosidase, beta A,
           lysosomal-like (LOC428138), mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 653 cctgcagccccctcctcctc 672
           ||||||||||||||||||||
Sbjct: 279 cctgcagccccctcctcctc 298



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>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence
          Length = 422021

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    cagctgcagcaggttcagca 309
              ||||||||||||||||||||
Sbjct: 325163 cagctgcagcaggttcagca 325144



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>gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosome 10, complete sequence
          Length = 198030

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 454    tctatttcaatgatttcttcaggt 477
              |||||||||||| |||||||||||
Sbjct: 167318 tctatttcaatgttttcttcaggt 167295



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>emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chromosome 13 Contains the
             KATNAL1 gene for katanin p60 subunit A-like 1, a
             peroxiredoxin 2 (PRDX2) pseudogene, two novel genes and
             two CpG islands, complete sequence
          Length = 182303

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   tctatttcaatgatttcttc 473
             ||||||||||||||||||||
Sbjct: 26193 tctatttcaatgatttcttc 26174



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>emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chromosome 9 Contains the 5'
              end of the gene for DEAD/H (Asp-Glu-Ala-Asp/His) box
              polypeptide (RIG-I), the gene for tumor protein p53-binding
              protein (TP53BPL), a novel gene, a DNA fragmentation
              factor, 40kDa, beta polypeptide (caspase-activated DNase)
              (DFFB) (CAD, CPAN, DFF40) pseudogene, a novel gene
              (FLJ25547), the  NDUFB6 gene for NADH dehydrogenase
              (ubiquinone) 1 beta subcomplex, 6, 17kDa (B17), and a CpG
              island, complete sequence
          Length = 155585

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    aatggccttcttcctccttg 358
              ||||||||||||||||||||
Sbjct: 134604 aatggccttcttcctccttg 134623



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>gb|AC161447.6| Mus musculus BAC clone RP24-333C14 from chromosome 17, complete sequence
          Length = 182569

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     tgaagttttacaacagagga 79
              ||||||||||||||||||||
Sbjct: 160679 tgaagttttacaacagagga 160698



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>gb|AC091862.3| Homo sapiens chromosome 5 clone CTD-2349K24, complete sequence
          Length = 119395

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 62    aagttttacaacagaggaatgtaa 85
             |||||||| |||||||||||||||
Sbjct: 80377 aagttttataacagaggaatgtaa 80400



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>gb|AC016561.7| Homo sapiens chromosome 5 clone CTC-466C4, complete sequence
          Length = 95105

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    aagttttacaacagaggaatgtaa 85
             |||||||| |||||||||||||||
Sbjct: 82039 aagttttataacagaggaatgtaa 82016



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>gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, complete sequence
          Length = 156107

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   tgcctcagagatcattttct 454
             ||||||||||||||||||||
Sbjct: 21767 tgcctcagagatcattttct 21748



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>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177115

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    cctcagagatcattttctct 456
              ||||||||||||||||||||
Sbjct: 170690 cctcagagatcattttctct 170671



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>gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complete sequence
          Length = 180918

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   tgtgatgaaagaaaagctgc 254
             ||||||||||||||||||||
Sbjct: 91681 tgtgatgaaagaaaagctgc 91700



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>gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chromosome unknown, complete
              sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 454    tctatttcaatgatttcttc 473
              ||||||||||||||||||||
Sbjct: 112522 tctatttcaatgatttcttc 112541



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>gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosome 9, complete sequence
          Length = 210202

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   tgacaactcccccagaaact 286
             ||||||||||||||||||||
Sbjct: 49771 tgacaactcccccagaaact 49752



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>gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complete sequence
          Length = 192562

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   aagaaaagctgctgcaattt 262
             ||||||||||||||||||||
Sbjct: 27064 aagaaaagctgctgcaattt 27045



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>gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, complete sequence
          Length = 166555

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    gatgaaagaaaagctgctgc 257
              ||||||||||||||||||||
Sbjct: 166494 gatgaaagaaaagctgctgc 166475



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>gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, complete sequence
          Length = 207234

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    gatgaaagaaaagctgctgc 257
              ||||||||||||||||||||
Sbjct: 201475 gatgaaagaaaagctgctgc 201494



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>gb|AC152950.2| Mus musculus 10 BAC RP23-138J18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 181465

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 452    tctctatttcaatgatttct 471
              ||||||||||||||||||||
Sbjct: 106142 tctctatttcaatgatttct 106123


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,724,023
Number of Sequences: 3902068
Number of extensions: 6724023
Number of successful extensions: 149299
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149075
Number of HSP's gapped (non-prelim): 224
length of query: 718
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 695
effective length of database: 17,143,297,704
effective search space: 11914591904280
effective search space used: 11914591904280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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