No.
Definition
Score (bits)
E Value
1 ref|NM_192031.1| Oryza sativa (japonica cultivar-group), predic...
365
1e-97
2 dbj|AK120629.1| Oryza sativa (japonica cultivar-group) cDNA clon...
365
1e-97
3 dbj|AK063019.1| Oryza sativa (japonica cultivar-group) cDNA clon...
365
1e-97
4 gb|AY106215.1| Zea mays PCO086004 mRNA sequence
280
6e-72
5 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
248
2e-62
6 dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic D...
248
2e-62
7 dbj|AK062194.1| Oryza sativa (japonica cultivar-group) cDNA clon...
192
1e-45
8 dbj|AK071536.1| Oryza sativa (japonica cultivar-group) cDNA clon...
125
2e-25
9 gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, comple...
50
0.010
10 gb|AY770501.1| Sesamum indicum microsomal oleic acid desaturase ...
44
0.63
11 ref|XM_952035.1| Neurospora crassa OR74A hypothetical protein (N...
44
0.63
12 ref|XM_326342.1| Neurospora crassa OR74A hypothetical protein (N...
44
0.63
13 gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, comp...
42
2.5
14 gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome...
42
2.5
15 emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 o...
42
2.5
16 gb|DQ366743.1| Uncultured Prochlorococcus marinus clone HOT0M-8F...
42
2.5
17 emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete ...
42
2.5
18 gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell ...
42
2.5
19 gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell...
42
2.5
20 dbj|AK165756.1| Mus musculus 15 days embryo brain cDNA, RIKEN fu...
42
2.5
21 dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...
42
2.5
22 gb|AC157520.2| Mus musculus BAC clone RP23-229N21 from 6, comple...
42
2.5
23 gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74...
42
2.5
24 gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosom...
42
2.5
25 gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, co...
40
9.8
26 gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, comp...
40
9.8
27 ref|XM_425695.1| PREDICTED: Gallus gallus similar to mannosidase...
40
9.8
28 gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, comp...
40
9.8
29 gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosom...
40
9.8
30 emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chr...
40
9.8
31 emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chr...
40
9.8
32 gb|AC161447.6| Mus musculus BAC clone RP24-333C14 from chromosom...
40
9.8
33 gb|AC091862.3| Homo sapiens chromosome 5 clone CTD-2349K24, comp...
40
9.8
34 gb|AC016561.7| Homo sapiens chromosome 5 clone CTC-466C4, comple...
40
9.8
35 gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, comp...
40
9.8
36 gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park C...
40
9.8
37 gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complet...
40
9.8
38 gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chrom...
40
9.8
39 gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosom...
40
9.8
40 gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complet...
40
9.8
41 gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, comple...
40
9.8
42 gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, compl...
40
9.8
43 gb|AC152950.2| Mus musculus 10 BAC RP23-138J18 (Roswell Park Can...
40
9.8
>dbj|AK120629.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013153D21, full
insert sequence
Length = 915
Score = 365 bits (184), Expect = 1e-97
Identities = 286/320 (89%)
Strand = Plus / Minus
Query: 295 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 354
|||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 616 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 557
Query: 355 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 414
|| ||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 556 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 497
Query: 415 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 474
|||||||| |||||||||||||||||||| ||| ||||||||||| |||||| ||||||
Sbjct: 496 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 437
Query: 475 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 534
||| |||||| |||||||| | ||||||||||||||| | |||||||||||||||| |
Sbjct: 436 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 377
Query: 535 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 594
|||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 376 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 317
Query: 595 ctcttcttcaccgagtccgg 614
|||||||| |||||||||||
Sbjct: 316 ctcttcttgaccgagtccgg 297
Score = 50.1 bits (25), Expect = 0.010
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 644 cgcacaccacctgcagccccctcctcctcaaccttccccgtcgacgccg 692
|||||||||||| ||| |||||||||||| ||| |||||| ||||||||
Sbjct: 261 cgcacaccacctccagtcccctcctcctccacc-tccccgacgacgccg 214
Score = 40.1 bits (20), Expect = 9.8
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 208 aacatatgc-tgtccaaaattggcaaga 234
||||||||| ||||||||||||||||||
Sbjct: 705 aacatatgcatgtccaaaattggcaaga 678
>dbj|AK063019.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B01, full
insert sequence
Length = 727
Score = 365 bits (184), Expect = 1e-97
Identities = 286/320 (89%)
Strand = Plus / Minus
Query: 295 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 354
|||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 613 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 554
Query: 355 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 414
|| ||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 553 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 494
Query: 415 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 474
|||||||| |||||||||||||||||||| ||| ||||||||||| |||||| ||||||
Sbjct: 493 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 434
Query: 475 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 534
||| |||||| |||||||| | ||||||||||||||| | |||||||||||||||| |
Sbjct: 433 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 374
Query: 535 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 594
|||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 373 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 314
Query: 595 ctcttcttcaccgagtccgg 614
|||||||| |||||||||||
Sbjct: 313 ctcttcttgaccgagtccgg 294
Score = 50.1 bits (25), Expect = 0.010
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 644 cgcacaccacctgcagccccctcctcctcaaccttccccgtcgacgccg 692
|||||||||||| ||| |||||||||||| ||| |||||| ||||||||
Sbjct: 258 cgcacaccacctccagtcccctcctcctccacc-tccccgacgacgccg 211
Score = 40.1 bits (20), Expect = 9.8
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 208 aacatatgc-tgtccaaaattggcaaga 234
||||||||| ||||||||||||||||||
Sbjct: 702 aacatatgcatgtccaaaattggcaaga 675
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 248 bits (125), Expect = 2e-62
Identities = 203/229 (88%)
Strand = Plus / Minus
Query: 295 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 354
|||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 27917295 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 27917236
Query: 355 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 414
|| ||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 27917235 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 27917176
Query: 415 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 474
|||||||| |||||||||||||||||||| ||| ||||||||||| |||||| ||||||
Sbjct: 27917175 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 27917116
Query: 475 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaacct 523
||| |||||| |||||||| | ||||||||||||||| | |||||||
Sbjct: 27917115 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaacct 27917067
Score = 125 bits (63), Expect = 2e-25
Identities = 87/95 (91%)
Strand = Plus / Minus
Query: 520 accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 579
||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct: 27916044 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 27915985
Query: 580 tcattctggcgctccctcttcttcaccgagtccgg 614
|| ||||| |||||||||||||| |||||||||||
Sbjct: 27915984 tcgttctgccgctccctcttcttgaccgagtccgg 27915950
Score = 50.1 bits (25), Expect = 0.010
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 644 cgcacaccacctgcagccccctcctcctcaaccttccccgtcgacgccg 692
|||||||||||| ||| |||||||||||| ||| |||||| ||||||||
Sbjct: 27915914 cgcacaccacctccagtcccctcctcctccacc-tccccgacgacgccg 27915867
Score = 40.1 bits (20), Expect = 9.8
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 208 aacatatgc-tgtccaaaattggcaaga 234
||||||||| ||||||||||||||||||
Sbjct: 27917384 aacatatgcatgtccaaaattggcaaga 27917357
>dbj|AP003335.4 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1144G04
Length = 194459
Score = 248 bits (125), Expect = 2e-62
Identities = 203/229 (88%)
Strand = Plus / Minus
Query: 295 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 354
|||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 103976 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 103917
Query: 355 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 414
|| ||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 103916 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 103857
Query: 415 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 474
|||||||| |||||||||||||||||||| ||| ||||||||||| |||||| ||||||
Sbjct: 103856 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 103797
Query: 475 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaacct 523
||| |||||| |||||||| | ||||||||||||||| | |||||||
Sbjct: 103796 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaacct 103748
Score = 125 bits (63), Expect = 2e-25
Identities = 87/95 (91%)
Strand = Plus / Minus
Query: 520 accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 579
||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct: 102725 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 102666
Query: 580 tcattctggcgctccctcttcttcaccgagtccgg 614
|| ||||| |||||||||||||| |||||||||||
Sbjct: 102665 tcgttctgccgctccctcttcttgaccgagtccgg 102631
Score = 50.1 bits (25), Expect = 0.010
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 644 cgcacaccacctgcagccccctcctcctcaaccttccccgtcgacgccg 692
|||||||||||| ||| |||||||||||| ||| |||||| ||||||||
Sbjct: 102595 cgcacaccacctccagtcccctcctcctccacc-tccccgacgacgccg 102548
Score = 40.1 bits (20), Expect = 9.8
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 208 aacatatgc-tgtccaaaattggcaaga 234
||||||||| ||||||||||||||||||
Sbjct: 104065 aacatatgcatgtccaaaattggcaaga 104038
>emb|AL353671.6 | Human DNA sequence from clone RP11-205M20 on chromosome 9 Contains the 5'
end of the gene for DEAD/H (Asp-Glu-Ala-Asp/His) box
polypeptide (RIG-I), the gene for tumor protein p53-binding
protein (TP53BPL), a novel gene, a DNA fragmentation
factor, 40kDa, beta polypeptide (caspase-activated DNase)
(DFFB) (CAD, CPAN, DFF40) pseudogene, a novel gene
(FLJ25547), the NDUFB6 gene for NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 6, 17kDa (B17), and a CpG
island, complete sequence
Length = 155585
Score = 40.1 bits (20), Expect = 9.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 339 aatggccttcttcctccttg 358
||||||||||||||||||||
Sbjct: 134604 aatggccttcttcctccttg 134623
>gb|AC152950.2 | Mus musculus 10 BAC RP23-138J18 (Roswell Park Cancer Institute (C57BL/6J
Female) Mouse BAC Library) complete sequence
Length = 181465
Score = 40.1 bits (20), Expect = 9.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 452 tctctatttcaatgatttct 471
||||||||||||||||||||
Sbjct: 106142 tctctatttcaatgatttct 106123
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,724,023
Number of Sequences: 3902068
Number of extensions: 6724023
Number of successful extensions: 149299
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149075
Number of HSP's gapped (non-prelim): 224
length of query: 718
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 695
effective length of database: 17,143,297,704
effective search space: 11914591904280
effective search space used: 11914591904280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)