ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALR3_SALTI (Q8Z300) Alanine racemase 3 (EC 5.1.1.1) 30 6.0
2TRDN_RABIT (Q28820) Triadin 29 7.9

>ALR3_SALTI (Q8Z300) Alanine racemase 3 (EC 5.1.1.1)|
          Length = 368

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
 Frame = -3

Query: 378 QTWKSTPH*PVFLLPLTVSR------GIPAPPGLIVTHTARVSVAAAPVPLWNATPHN 223
           Q W STP  P F L LT+ R      G P   G  VT T  + +A       +  P N
Sbjct: 231 QPWFSTPLKPAFTLTLTILRVQDVPVGTPIGYGSTVTTTRPLRIATVSAGYADGIPRN 288



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>TRDN_RABIT (Q28820) Triadin|
          Length = 705

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 303 EELEFHG*PSRVVEKQVNAVWTSKFERRAGGQDQLAGCDHFQRQPPELDVSTPDANA 473
           E+   HG P   V KQV AV T K  +    +      +H +++PP +    P + +
Sbjct: 538 EKTALHGKPEEKVLKQVKAVTTEKHVKPKPAKK----AEHQEKEPPSIKTDKPKSTS 590


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,708,816
Number of Sequences: 219361
Number of extensions: 1534699
Number of successful extensions: 3441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3441
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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