ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4g14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BC105835.1| Rattus norvegicus cDNA clone IMAGE:7453109 40 1.9
2gb|AC117206.3| Mus musculus BAC clone RP23-260L17 from 5, comple... 40 1.9
3gb|AC110918.9| Mus musculus chromosome 5, clone RP23-189P23, com... 40 1.9
4gb|AC013283.23| Homo sapiens 12 BAC RP11-481K9 (Roswell Park Can... 40 1.9
5gb|AC013418.32| Homo sapiens 12 BAC RP11-181C3 (Roswell Park Can... 40 1.9
6ref|NM_124090.1| Arabidopsis thaliana structural constituent of ... 38 7.4
7gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete... 38 7.4
8ref|NM_001033011.1| Sus scrofa Fc gamma receptor I (FCGR1A), mRNA 38 7.4
9ref|XM_990655.1| PREDICTED: Mus musculus RIKEN cDNA B430201A12 g... 38 7.4
10ref|XM_990687.1| PREDICTED: Mus musculus RIKEN cDNA B430201A12 g... 38 7.4
11ref|XM_974847.1| PREDICTED: Mus musculus RIKEN cDNA B430201A12 g... 38 7.4
12ref|XM_283903.5| PREDICTED: Mus musculus RIKEN cDNA B430201A12 g... 38 7.4
13ref|XM_669671.1| Plasmodium berghei strain ANKA heat shock prote... 38 7.4
14ref|XM_675364.1| Plasmodium berghei strain ANKA hypothetical pro... 38 7.4
15gb|AC129095.12| Mus musculus strain C57BL/6J clone rp23-360g16 m... 38 7.4
16gb|AY117181.1| Arabidopsis thaliana unknown protein (At5g47190) ... 38 7.4
17gb|AY080626.1| Arabidopsis thaliana unknown protein (At5g47190) ... 38 7.4
18gb|DQ026063.1| Sus scrofa Fc gamma receptor I mRNA, complete cds 38 7.4
19ref|NM_132877.1| Drosophila melanogaster CG8958-RA (CG8958), mRNA 38 7.4
20gb|AC106748.3| Homo sapiens chromosome 5 clone RP11-155G15, comp... 38 7.4
21dbj|AP008978.1| Montastraea faveolata mitochondrial DNA, complet... 38 7.4
22dbj|AP008977.1| Montastraea faveolata mitochondrial DNA, complet... 38 7.4
23dbj|AP008976.1| Montastraea franksi mitochondrial DNA, complete ... 38 7.4
24dbj|AP008975.1| Montastraea franksi mitochondrial DNA, complete ... 38 7.4
25dbj|AP008974.1| Montastraea annularis mitochondrial DNA, complet... 38 7.4
26dbj|AP008973.1| Montastraea annularis mitochondrial DNA, complet... 38 7.4
27gb|AY086970.1| Arabidopsis thaliana clone 30034 mRNA, complete s... 38 7.4
28dbj|AB117372.1| Trachyphyllia geoffroyi mitochondrial cytb gene ... 38 7.4
29dbj|AB117346.1| Favia favus mitochondrial cytb gene for cytochro... 38 7.4
30dbj|AB117345.1| Favia pallida mitochondrial cytb gene for cytoch... 38 7.4
31dbj|AB117344.1| Favia pallida mitochondrial cytb gene for cytoch... 38 7.4
32dbj|AB117339.1| Montastraea faveolata mitochondrial cytb gene fo... 38 7.4
33dbj|AB117338.1| Montastraea franksi mitochondrial cytb gene for ... 38 7.4
34dbj|AB117337.1| Montastraea annularis mitochondrial cytb gene fo... 38 7.4
35dbj|AB117336.1| Cyphastrea chalcidicum mitochondrial cytb gene f... 38 7.4
36dbj|AB117335.1| Cyphastrea serailia mitochondrial cytb gene for ... 38 7.4
37dbj|AB117334.1| Cyphastrea serailia mitochondrial cytb gene for ... 38 7.4
38dbj|AB018117.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 38 7.4
39gb|AE003501.4| Drosophila melanogaster chromosome X, section 53 ... 38 7.4
40gb|AC087901.20| Mus musculus strain C57BL/6J chromosome 17 clone... 38 7.4
41emb|BX005256.11| Zebrafish DNA sequence from clone DKEY-79D12, c... 38 7.4
42emb|AL671894.20| Mouse DNA sequence from clone RP23-316M11 on ch... 38 7.4 
>gb|BC105835.1| Rattus norvegicus cDNA clone IMAGE:7453109
          Length = 1805

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 70   cggtaatagaggatagcaagaaag 93
            |||| |||||||||||||||||||
Sbjct: 1236 cggtcatagaggatagcaagaaag 1213
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>gb|AC117206.3| Mus musculus BAC clone RP23-260L17 from 5, complete sequence
          Length = 183385

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    tgaatcaagaaactatataa 60
             ||||||||||||||||||||
Sbjct: 26866 tgaatcaagaaactatataa 26885
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>gb|AC110918.9| Mus musculus chromosome 5, clone RP23-189P23, complete sequence
          Length = 267946

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     tgaatcaagaaactatataa 60
              ||||||||||||||||||||
Sbjct: 259980 tgaatcaagaaactatataa 259999
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>gb|AC013283.23| Homo sapiens 12 BAC RP11-481K9 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 96206

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  agaaactatataagcccaag 67
           ||||||||||||||||||||
Sbjct: 835 agaaactatataagcccaag 854
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>gb|AC013418.32| Homo sapiens 12 BAC RP11-181C3 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 122292

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   agaaactatataagcccaag 67
            ||||||||||||||||||||
Sbjct: 1171 agaaactatataagcccaag 1152
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>ref|NM_124090.1| Arabidopsis thaliana structural constituent of ribosome AT5G47190
           mRNA, complete cds
          Length = 917

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 97  aaaagttgagagactaggaagtt 119
           |||||||||||||| ||||||||
Sbjct: 727 aaaagttgagagacgaggaagtt 705
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>gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete sequence
          Length = 179931

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 131   tctcgatgaatgtgaaaaa 149
             |||||||||||||||||||
Sbjct: 39312 tctcgatgaatgtgaaaaa 39330
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>ref|NM_001033011.1| Sus scrofa Fc gamma receptor I (FCGR1A), mRNA
          Length = 1254

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 95   ccaaaagttgagagactag 113
            |||||||||||||||||||
Sbjct: 1200 ccaaaagttgagagactag 1218
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>ref|XM_990655.1| PREDICTED: Mus musculus RIKEN cDNA B430201A12 gene, transcript
            variant 1 (B430201A12Rik), mRNA
          Length = 5410

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 40   atgaatcaagaaactatat 58
            |||||||||||||||||||
Sbjct: 3362 atgaatcaagaaactatat 3344
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>ref|XM_990687.1| PREDICTED: Mus musculus RIKEN cDNA B430201A12 gene, transcript
            variant 2 (B430201A12Rik), mRNA
          Length = 5416

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 40   atgaatcaagaaactatat 58
            |||||||||||||||||||
Sbjct: 3368 atgaatcaagaaactatat 3350
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>ref|XM_974847.1| PREDICTED: Mus musculus RIKEN cDNA B430201A12 gene (B430201A12Rik),
            mRNA
          Length = 5413

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 40   atgaatcaagaaactatat 58
            |||||||||||||||||||
Sbjct: 3365 atgaatcaagaaactatat 3347
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>ref|XM_283903.5| PREDICTED: Mus musculus RIKEN cDNA B430201A12 gene (B430201A12Rik),
            mRNA
          Length = 6040

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 40   atgaatcaagaaactatat 58
            |||||||||||||||||||
Sbjct: 3992 atgaatcaagaaactatat 3974
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>ref|XM_669671.1| Plasmodium berghei strain ANKA heat shock protein 86
           (PB300823.00.0) partial mRNA
          Length = 1455

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 87  aagaaaggccaaaagttga 105
           |||||||||||||||||||
Sbjct: 323 aagaaaggccaaaagttga 341
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>ref|XM_675364.1| Plasmodium berghei strain ANKA hypothetical protein (PB001532.02.0)
           partial mRNA
          Length = 1374

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 87  aagaaaggccaaaagttga 105
           |||||||||||||||||||
Sbjct: 743 aagaaaggccaaaagttga 761
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>gb|AC129095.12| Mus musculus strain C57BL/6J clone rp23-360g16 map 17, complete
             sequence
          Length = 209946

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    aaggccaaaagttgagaga 109
             |||||||||||||||||||
Sbjct: 32058 aaggccaaaagttgagaga 32076
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>gb|AY117181.1| Arabidopsis thaliana unknown protein (At5g47190) mRNA, complete cds
          Length = 721

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 97  aaaagttgagagactaggaagtt 119
           |||||||||||||| ||||||||
Sbjct: 684 aaaagttgagagacgaggaagtt 662
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>gb|AY080626.1| Arabidopsis thaliana unknown protein (At5g47190) mRNA, complete cds
          Length = 928

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 97  aaaagttgagagactaggaagtt 119
           |||||||||||||| ||||||||
Sbjct: 726 aaaagttgagagacgaggaagtt 704
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>gb|DQ026063.1| Sus scrofa Fc gamma receptor I mRNA, complete cds
          Length = 1254

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 95   ccaaaagttgagagactag 113
            |||||||||||||||||||
Sbjct: 1200 ccaaaagttgagagactag 1218
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>ref|NM_132877.1| Drosophila melanogaster CG8958-RA (CG8958), mRNA
          Length = 2014

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 131 tctcgatgaatgtgaaaaa 149
           |||||||||||||||||||
Sbjct: 182 tctcgatgaatgtgaaaaa 200
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>gb|AC106748.3| Homo sapiens chromosome 5 clone RP11-155G15, complete sequence
          Length = 169734

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 43     aatcaagaaactatataag 61
              |||||||||||||||||||
Sbjct: 135574 aatcaagaaactatataag 135592
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>dbj|AP008978.1| Montastraea faveolata mitochondrial DNA, complete genome, strain:
            Pa01-28
          Length = 16138

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 82   atagcaagaaaggccaaaa 100
            |||||||||||||||||||
Sbjct: 4393 atagcaagaaaggccaaaa 4375
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>dbj|AP008977.1| Montastraea faveolata mitochondrial DNA, complete genome, strain:
            Pa00-9
          Length = 16138

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 82   atagcaagaaaggccaaaa 100
            |||||||||||||||||||
Sbjct: 4393 atagcaagaaaggccaaaa 4375
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>dbj|AP008976.1| Montastraea franksi mitochondrial DNA, complete genome, strain:
            Pa01-5
          Length = 16137

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 82   atagcaagaaaggccaaaa 100
            |||||||||||||||||||
Sbjct: 4393 atagcaagaaaggccaaaa 4375
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>dbj|AP008975.1| Montastraea franksi mitochondrial DNA, complete genome, strain:
            Pa00-3
          Length = 16138

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 82   atagcaagaaaggccaaaa 100
            |||||||||||||||||||
Sbjct: 4393 atagcaagaaaggccaaaa 4375
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>dbj|AP008974.1| Montastraea annularis mitochondrial DNA, complete genome, strain:
            M01-4
          Length = 16138

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 82   atagcaagaaaggccaaaa 100
            |||||||||||||||||||
Sbjct: 4393 atagcaagaaaggccaaaa 4375
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>dbj|AP008973.1| Montastraea annularis mitochondrial DNA, complete genome, strain:
            Pa01-23
          Length = 16138

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 82   atagcaagaaaggccaaaa 100
            |||||||||||||||||||
Sbjct: 4393 atagcaagaaaggccaaaa 4375
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>gb|AY086970.1| Arabidopsis thaliana clone 30034 mRNA, complete sequence
          Length = 918

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 97  aaaagttgagagactaggaagtt 119
           |||||||||||||| ||||||||
Sbjct: 727 aaaagttgagagacgaggaagtt 705
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>dbj|AB117372.1| Trachyphyllia geoffroyi mitochondrial cytb gene for cytochrome b,
           complete cds, isolate:PN1&2
          Length = 1140

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  atagcaagaaaggccaaaa 100
           |||||||||||||||||||
Sbjct: 578 atagcaagaaaggccaaaa 560
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>dbj|AB117346.1| Favia favus mitochondrial cytb gene for cytochrome b, complete cds,
           isolate:OK1
          Length = 1140

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  atagcaagaaaggccaaaa 100
           |||||||||||||||||||
Sbjct: 578 atagcaagaaaggccaaaa 560
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>dbj|AB117345.1| Favia pallida mitochondrial cytb gene for cytochrome b, complete
           cds, isolate:OK1&2
          Length = 1140

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  atagcaagaaaggccaaaa 100
           |||||||||||||||||||
Sbjct: 578 atagcaagaaaggccaaaa 560
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>dbj|AB117344.1| Favia pallida mitochondrial cytb gene for cytochrome b, complete
           cds, isolate:OK2
          Length = 1140

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  atagcaagaaaggccaaaa 100
           |||||||||||||||||||
Sbjct: 578 atagcaagaaaggccaaaa 560
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>dbj|AB117339.1| Montastraea faveolata mitochondrial cytb gene for cytochrome b,
           complete cds, isolate:OK1
          Length = 1140

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  atagcaagaaaggccaaaa 100
           |||||||||||||||||||
Sbjct: 578 atagcaagaaaggccaaaa 560
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>dbj|AB117338.1| Montastraea franksi mitochondrial cytb gene for cytochrome b,
           complete cds, isolate:PN1&2
          Length = 1140

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  atagcaagaaaggccaaaa 100
           |||||||||||||||||||
Sbjct: 578 atagcaagaaaggccaaaa 560
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>dbj|AB117337.1| Montastraea annularis mitochondrial cytb gene for cytochrome b,
           complete cds, isolate:PN1&2
          Length = 1140

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  atagcaagaaaggccaaaa 100
           |||||||||||||||||||
Sbjct: 578 atagcaagaaaggccaaaa 560
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>dbj|AB117336.1| Cyphastrea chalcidicum mitochondrial cytb gene for cytochrome b,
           complete cds, isolate:PN1&2
          Length = 1140

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  atagcaagaaaggccaaaa 100
           |||||||||||||||||||
Sbjct: 578 atagcaagaaaggccaaaa 560
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>dbj|AB117335.1| Cyphastrea serailia mitochondrial cytb gene for cytochrome b,
           complete cds, isolate:TW1&2
          Length = 1140

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  atagcaagaaaggccaaaa 100
           |||||||||||||||||||
Sbjct: 578 atagcaagaaaggccaaaa 560
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>dbj|AB117334.1| Cyphastrea serailia mitochondrial cytb gene for cytochrome b,
           complete cds, isolate:OK2
          Length = 1140

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  atagcaagaaaggccaaaa 100
           |||||||||||||||||||
Sbjct: 578 atagcaagaaaggccaaaa 560
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>dbj|AB018117.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5
          Length = 88398

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 97    aaaagttgagagactaggaagtt 119
             |||||||||||||| ||||||||
Sbjct: 12780 aaaagttgagagacgaggaagtt 12802
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>gb|AE003501.4| Drosophila melanogaster chromosome X, section 53 of 74 of the complete
             sequence
          Length = 323840

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 131   tctcgatgaatgtgaaaaa 149
             |||||||||||||||||||
Sbjct: 74386 tctcgatgaatgtgaaaaa 74404
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>gb|AC087901.20| Mus musculus strain C57BL/6J chromosome 17 clone rp23-22l23, complete
             sequence
          Length = 214372

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    aaggccaaaagttgagaga 109
             |||||||||||||||||||
Sbjct: 76179 aaggccaaaagttgagaga 76197
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>emb|BX005256.11| Zebrafish DNA sequence from clone DKEY-79D12, complete sequence
          Length = 199468

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 29     aatgatctacaatgaatca 47
              |||||||||||||||||||
Sbjct: 178394 aatgatctacaatgaatca 178376
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>emb|AL671894.20| Mouse DNA sequence from clone RP23-316M11 on chromosome 3, complete
              sequence
          Length = 194209

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     atgaatcaagaaactatat 58
              |||||||||||||||||||
Sbjct: 143943 atgaatcaagaaactatat 143961


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,164,243
Number of Sequences: 3902068
Number of extensions: 1164243
Number of successful extensions: 76032
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75979
Number of HSP's gapped (non-prelim): 53
length of query: 153
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 132
effective length of database: 17,151,101,840
effective search space: 2263945442880
effective search space used: 2263945442880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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