ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4f17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY838897.1| Oryza sativa (japonica cultivar-group) 9-cis-epox... 226 4e-56
2ref|XM_506928.1| PREDICTED Oryza sativa (japonica cultivar-group... 226 4e-56
3ref|XM_467354.1| Oryza sativa (japonica cultivar-group), mRNA 226 4e-56
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 226 4e-56
5dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic D... 226 4e-56
6dbj|AK099580.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 4e-56
7dbj|AK064824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 4e-56
8gb|AY838901.1| Oryza sativa (japonica cultivar-group) 9-cis-epox... 48 0.019
9gb|AY838900.1| Oryza sativa (japonica cultivar-group) 9-cis-epox... 48 0.019
10dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
12dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
13dbj|AK119780.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
14dbj|AK107649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
15gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.019
16emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb... 48 0.019
17emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb... 48 0.019
18gb|AY838899.1| Oryza sativa (japonica cultivar-group) 9-cis-epox... 46 0.073
19emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0... 46 0.073
20gb|DQ145930.1| Hordeum vulgare subsp. vulgare 9-cis-epoxycaroten... 46 0.073
21dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.073
22emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, stra... 44 0.29
23emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.1
24emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 42 1.1
25emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 42 1.1
26gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.1
27dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.1
28dbj|D78198.1| Pimelobacter sp. DNA for trehalose synthase, compl... 42 1.1
29ref|XM_469957.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
30ref|XM_478943.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
31gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
32ref|XM_366971.1| Magnaporthe grisea 70-15 chromosome VII hypothe... 40 4.5
33gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 40 4.5
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.5
35gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 4.5
36emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 4.5
37emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4,... 40 4.5
38dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 4.5
39gb|AC151535.2| Mus musculus BAC clone RP23-213M8 from chromosome... 40 4.5
40dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
41dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
42gb|AC009111.8| Homo sapiens chromosome 16 clone RP11-468D1, comp... 40 4.5
43gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, com... 40 4.5
44gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, part... 40 4.5
45dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
46dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 4.5
47dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.5
48dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
49dbj|AK067897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
50dbj|AK067186.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
51gb|U95953.1|ZMU95953 Zea mays viviparous-14 (vp14) mRNA, complet... 40 4.5
52gb|AC151531.3| Mus musculus BAC clone RP24-387D22 from chromosom... 40 4.5
53gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5 
>gb|AY838897.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid
            dioxygenase 1 (NCED1) mRNA, complete cds
          Length = 2119

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Minus

                                                                        
Query: 147  atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 206
            ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 2018 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1959

                                                                        
Query: 207  ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 266
            |||||||    || ||||||||||| |||||||| |||||||| |||||| | |||||||
Sbjct: 1958 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 1899

                                                                        
Query: 267  tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 326
            |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| ||||
Sbjct: 1898 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 1839

                          
Query: 327  cgtcctcgtcgccg 340
            | ||||||| ||||
Sbjct: 1838 catcctcgttgccg 1825
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>ref|XM_506928.1| PREDICTED Oryza sativa (japonica cultivar-group), P0724B10.24 mRNA
          Length = 2079

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Minus

                                                                        
Query: 147  atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 206
            ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877

                                                                        
Query: 207  ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 266
            |||||||    || ||||||||||| |||||||| |||||||| |||||| | |||||||
Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 1817

                                                                        
Query: 267  tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 326
            |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| ||||
Sbjct: 1816 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 1757

                          
Query: 327  cgtcctcgtcgccg 340
            | ||||||| ||||
Sbjct: 1756 catcctcgttgccg 1743
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>ref|XM_467354.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2079

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Minus

                                                                        
Query: 147  atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 206
            ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877

                                                                        
Query: 207  ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 266
            |||||||    || ||||||||||| |||||||| |||||||| |||||| | |||||||
Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 1817

                                                                        
Query: 267  tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 326
            |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| ||||
Sbjct: 1816 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 1757

                          
Query: 327  cgtcctcgtcgccg 340
            | ||||||| ||||
Sbjct: 1756 catcctcgttgccg 1743
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Plus

                                                                            
Query: 147      atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 206
                ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 29044735 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 29044794

                                                                            
Query: 207      ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 266
                |||||||    || ||||||||||| |||||||| |||||||| |||||| | |||||||
Sbjct: 29044795 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 29044854

                                                                            
Query: 267      tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 326
                |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| ||||
Sbjct: 29044855 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 29044914

                              
Query: 327      cgtcctcgtcgccg 340
                | ||||||| ||||
Sbjct: 29044915 catcctcgttgccg 29044928



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 318      cgtagccgtcgtcctcgtcg 337
                ||||||||||||||||||||
Sbjct: 32012087 cgtagccgtcgtcctcgtcg 32012068
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>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0724B10
          Length = 169143

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Plus

                                                                         
Query: 147   atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 206
             ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 90900 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 90959

                                                                         
Query: 207   ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 266
             |||||||    || ||||||||||| |||||||| |||||||| |||||| | |||||||
Sbjct: 90960 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 91019

                                                                         
Query: 267   tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 326
             |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| ||||
Sbjct: 91020 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 91079

                           
Query: 327   cgtcctcgtcgccg 340
             | ||||||| ||||
Sbjct: 91080 catcctcgttgccg 91093
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>dbj|AK099580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040C20, full
            insert sequence
          Length = 2080

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Minus

                                                                        
Query: 147  atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 206
            ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877

                                                                        
Query: 207  ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 266
            |||||||    || ||||||||||| |||||||| |||||||| |||||| | |||||||
Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 1817

                                                                        
Query: 267  tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 326
            |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| ||||
Sbjct: 1816 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 1757

                          
Query: 327  cgtcctcgtcgccg 340
            | ||||||| ||||
Sbjct: 1756 catcctcgttgccg 1743
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>dbj|AK064824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F03, full
            insert sequence
          Length = 2080

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Minus

                                                                        
Query: 147  atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 206
            ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877

                                                                        
Query: 207  ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 266
            |||||||    || ||||||||||| |||||||| |||||||| |||||| | |||||||
Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 1817

                                                                        
Query: 267  tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 326
            |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| ||||
Sbjct: 1816 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 1757

                          
Query: 327  cgtcctcgtcgccg 340
            | ||||||| ||||
Sbjct: 1756 catcctcgttgccg 1743
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>gb|AY838901.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid
            dioxygenase 5 (NCED5) mRNA, complete cds
          Length = 2041

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 190  gccgtggaagccgtaggggacgcg 213
            ||||||||||||||||||||||||
Sbjct: 1901 gccgtggaagccgtaggggacgcg 1878
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>gb|AY838900.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid
            dioxygenase 4 (NCED4) mRNA, complete cds
          Length = 1949

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 294  cctcgtcgtgcacgtagcacaccacgtagccgtcgtcctc 333
            |||||||||| ||| |||||| ||||| ||||||||||||
Sbjct: 1706 cctcgtcgtggacgaagcacagcacgtggccgtcgtcctc 1667
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 190      gccgtggaagccgtaggggacgcg 213
                ||||||||||||||||||||||||
Sbjct: 26303686 gccgtggaagccgtaggggacgcg 26303663
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                       
Query: 294     cctcgtcgtgcacgtagcacaccacgtagccgtcgtcctc 333
               |||||||||| ||| |||||| ||||| ||||||||||||
Sbjct: 2904562 cctcgtcgtggacgaagcacagcacgtggccgtcgtcctc 2904523



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 322      gccgtcgtcctcgtcgccgc 341
                ||||||||||||||||||||
Sbjct: 23938121 gccgtcgtcctcgtcgccgc 23938140
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>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0050B07
          Length = 142134

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 294   cctcgtcgtgcacgtagcacaccacgtagccgtcgtcctc 333
             |||||||||| ||| |||||| ||||| ||||||||||||
Sbjct: 74849 cctcgtcgtggacgaagcacagcacgtggccgtcgtcctc 74810
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>dbj|AK119780.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D12, full
            insert sequence
          Length = 2144

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 294  cctcgtcgtgcacgtagcacaccacgtagccgtcgtcctc 333
            |||||||||| ||| |||||| ||||| ||||||||||||
Sbjct: 1725 cctcgtcgtggacgaagcacagcacgtggccgtcgtcctc 1686
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>dbj|AK107649.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-F10, full
           insert sequence
          Length = 1475

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 190 gccgtggaagccgtaggggacgcg 213
           ||||||||||||||||||||||||
Sbjct: 813 gccgtggaagccgtaggggacgcg 790
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 190      gccgtggaagccgtaggggacgcg 213
                ||||||||||||||||||||||||
Sbjct: 26231862 gccgtggaagccgtaggggacgcg 26231839
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>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 133978

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 190   gccgtggaagccgtaggggacgcg 213
             ||||||||||||||||||||||||
Sbjct: 67670 gccgtggaagccgtaggggacgcg 67647
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>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131689

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 190   gccgtggaagccgtaggggacgcg 213
             ||||||||||||||||||||||||
Sbjct: 17965 gccgtggaagccgtaggggacgcg 17942
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>gb|AY838899.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid
            dioxygenase 3 (NCED3) mRNA, complete cds
          Length = 2060

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 190  gccgtggaagccgtaggggacgcgggatggaagctgcac 228
            ||||||||||||||| || |||||||| || ||||||||
Sbjct: 1958 gccgtggaagccgtacggcacgcgggacggcagctgcac 1920
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>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183327

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 190    gccgtggaagccgtaggggacgcgggatggaagctgcac 228
              ||||||||||||||| || |||||||| || ||||||||
Sbjct: 144759 gccgtggaagccgtacggcacgcgggacggcagctgcac 144721
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>gb|DQ145930.1| Hordeum vulgare subsp. vulgare 9-cis-epoxycarotenoid dioxygenase 1
            mRNA, complete cds
          Length = 2376

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 190  gccgtggaagccgtaggggacgcgggatggaagctgcac 228
            |||||||||||| |||||||| ||||| || ||||||||
Sbjct: 1773 gccgtggaagccataggggacccgggacggcagctgcac 1735



 Score = 46.1 bits (23), Expect = 0.073
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 294  cctcgtcgtgcacgtagcacaccacgtagccgtcgtcctcgtcgccg 340
            |||||||| ||||| || | | ||||||||||||||||||| |||||
Sbjct: 1675 cctcgtcgcgcacgaaggagagcacgtagccgtcgtcctcggcgccg 1629
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 190      gccgtggaagccgtaggggacgcgggatggaagctgcac 228
                ||||||||||||||| || |||||||| || ||||||||
Sbjct: 24766070 gccgtggaagccgtacggcacgcgggacggcagctgcac 24766032



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 322      gccgtcgtcctcgtcgccgc 341
                ||||||||||||||||||||
Sbjct: 32772435 gccgtcgtcctcgtcgccgc 32772416
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>emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 4/11
          Length = 349697

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 118    agaacgtgctggtgtatctgaatctg 143
              |||||||||||||||||||| |||||
Sbjct: 280488 agaacgtgctggtgtatctgtatctg 280513
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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 230   tcggcgacgatgtccaggtcgggcg 254
             |||||| ||||||||||||||||||
Sbjct: 48162 tcggcgtcgatgtccaggtcgggcg 48138
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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 230    tcggcgacgatgtccaggtcgggcg 254
              |||||| ||||||||||||||||||
Sbjct: 312040 tcggcgtcgatgtccaggtcgggcg 312016
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 230    tcggcgacgatgtccaggtcgggcg 254
              |||||| ||||||||||||||||||
Sbjct: 172205 tcggcgtcgatgtccaggtcgggcg 172229
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 271     cacgaaccggttgtcgccggt 291
               |||||||||||||||||||||
Sbjct: 1468903 cacgaaccggttgtcgccggt 1468883
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 222     gctgcacctcggcgacgatgtccag 246
               |||||||||||||||| ||||||||
Sbjct: 3236706 gctgcacctcggcgaccatgtccag 3236682



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 322    gccgtcgtcctcgtcgccgc 341
              ||||||||||||||||||||
Sbjct: 949299 gccgtcgtcctcgtcgccgc 949318
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>dbj|D78198.1| Pimelobacter sp. DNA for trehalose synthase, complete cds
          Length = 2304

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 283 gtcgccggtgccctcgtcgtgcacg 307
           |||||||||| ||||||||||||||
Sbjct: 252 gtcgccggtgacctcgtcgtgcacg 228
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>ref|XM_469957.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1358

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 gccgtcgtcctcgtcgccgc 341
           ||||||||||||||||||||
Sbjct: 303 gccgtcgtcctcgtcgccgc 322
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>ref|XM_478943.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 926

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 gccgtcgtcctcgtcgccgc 341
           ||||||||||||||||||||
Sbjct: 300 gccgtcgtcctcgtcgccgc 319
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>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19
              map R1938, complete sequence
          Length = 160847

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 322    gccgtcgtcctcgtcgccgc 341
              ||||||||||||||||||||
Sbjct: 110145 gccgtcgtcctcgtcgccgc 110164
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>ref|XM_366971.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
           (MG03047.4) partial mRNA
          Length = 3852

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 gccgtcgtcctcgtcgccgc 341
           ||||||||||||||||||||
Sbjct: 108 gccgtcgtcctcgtcgccgc 89
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>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
             sequence
          Length = 162497

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   gccgtcgtcctcgtcgccgc 341
             ||||||||||||||||||||
Sbjct: 61982 gccgtcgtcctcgtcgccgc 62001
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 322      gccgtcgtcctcgtcgccgc 341
                ||||||||||||||||||||
Sbjct: 32681925 gccgtcgtcctcgtcgccgc 32681906
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 177     gcctgacgaacaggccgtgg 196
               ||||||||||||||||||||
Sbjct: 2409487 gcctgacgaacaggccgtgg 2409468



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 186     acaggccgtggaagccgtag 205
               ||||||||||||||||||||
Sbjct: 1066435 acaggccgtggaagccgtag 1066454
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 313     caccacgtagccgtcgtcctcgtcgccg 340
               |||| |||||||||| ||||||||||||
Sbjct: 4078519 cacctcgtagccgtcctcctcgtcgccg 4078546
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>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22,
             complete sequence
          Length = 174430

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   gccgtcgtcctcgtcgccgc 341
             ||||||||||||||||||||
Sbjct: 95629 gccgtcgtcctcgtcgccgc 95610
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 186     acaggccgtggaagccgtag 205
               ||||||||||||||||||||
Sbjct: 2736990 acaggccgtggaagccgtag 2737009
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>gb|AC151535.2| Mus musculus BAC clone RP23-213M8 from chromosome 7, complete sequence
          Length = 216527

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     ttgtaaacatgtaaatgcta 21
             ||||||||||||||||||||
Sbjct: 57437 ttgtaaacatgtaaatgcta 57418
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 322      gccgtcgtcctcgtcgccgc 341
                ||||||||||||||||||||
Sbjct: 13981749 gccgtcgtcctcgtcgccgc 13981730
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 322     gccgtcgtcctcgtcgccgc 341
               ||||||||||||||||||||
Sbjct: 2334146 gccgtcgtcctcgtcgccgc 2334165
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>gb|AC009111.8| Homo sapiens chromosome 16 clone RP11-468D1, complete sequence
          Length = 153456

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    ctatttctcctatgtgtatg 55
             ||||||||||||||||||||
Sbjct: 55812 ctatttctcctatgtgtatg 55831
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>gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, complete sequence
          Length = 181955

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    ctatttctcctatgtgtatg 55
             ||||||||||||||||||||
Sbjct: 26147 ctatttctcctatgtgtatg 26128
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>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   gccgtcgtcctcgtcgccgc 341
             ||||||||||||||||||||
Sbjct: 79174 gccgtcgtcctcgtcgccgc 79155



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   gccgtcgtcctcgtcgccgc 341
             ||||||||||||||||||||
Sbjct: 57678 gccgtcgtcctcgtcgccgc 57697
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>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0005G07
          Length = 142850

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   gccgtcgtcctcgtcgccgc 341
             ||||||||||||||||||||
Sbjct: 93048 gccgtcgtcctcgtcgccgc 93067
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 231     cggcgacgatgtccaggtcg 250
               ||||||||||||||||||||
Sbjct: 4418128 cggcgacgatgtccaggtcg 4418147
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    cggcgacgatgtccaggtcg 250
              ||||||||||||||||||||
Sbjct: 576629 cggcgacgatgtccaggtcg 576648
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>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1175_B01
          Length = 96191

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   cgtagccgtcgtcctcgtcg 337
             ||||||||||||||||||||
Sbjct: 32462 cgtagccgtcgtcctcgtcg 32443
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>dbj|AK067897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123L13, full
           insert sequence
          Length = 1359

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 gccgtcgtcctcgtcgccgc 341
           ||||||||||||||||||||
Sbjct: 304 gccgtcgtcctcgtcgccgc 323
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>dbj|AK067186.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094J18, full
           insert sequence
          Length = 925

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 gccgtcgtcctcgtcgccgc 341
           ||||||||||||||||||||
Sbjct: 299 gccgtcgtcctcgtcgccgc 318
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>gb|U95953.1|ZMU95953 Zea mays viviparous-14 (vp14) mRNA, complete cds
          Length = 2498

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 190  gccgtggaagccgtaggggacgcgggatggaagctg 225
            ||||||||||||| |||| |||||||| || |||||
Sbjct: 1872 gccgtggaagccgaagggcacgcgggacggcagctg 1837
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>gb|AC151531.3| Mus musculus BAC clone RP24-387D22 from chromosome 7, complete sequence
          Length = 213801

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      ttgtaaacatgtaaatgcta 21
              ||||||||||||||||||||
Sbjct: 163728 ttgtaaacatgtaaatgcta 163709
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 322     gccgtcgtcctcgtcgccgc 341
               ||||||||||||||||||||
Sbjct: 2341927 gccgtcgtcctcgtcgccgc 2341946


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,068,839
Number of Sequences: 3902068
Number of extensions: 2068839
Number of successful extensions: 45017
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44235
Number of HSP's gapped (non-prelim): 775
length of query: 341
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 319
effective length of database: 17,147,199,772
effective search space: 5469956727268
effective search space used: 5469956727268
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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