ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4e21 |
|---|---|
| Clone Library Name | barley_pub |
>NDUA9_NEUCR (P25284) NADH-ubiquinone oxidoreductase 40 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-40KD) (CI-40KD) Length = 375 Score = 53.1 bits (126), Expect = 7e-07 Identities = 40/122 (32%), Positives = 60/122 (49%) Frame = -1 Query: 643 TYELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSI 464 T+EL GP YT +++EM+ I + R+VN+P I K +A +LNK L P I Sbjct: 255 TFELYGPKTYTTAEISEMVDREIYKRRRHVNVPKKILKPIAG----VLNKA---LWWP-I 306 Query: 463 FNLDQIKALSVDNLVSENALTFADLEIKPHKLKGYPTEFLVCYRKGGPSFGSTVSEKMGS 284 + D+I+ D ++ A TF DL I+P + + +L YR +EK Sbjct: 307 MSADEIEREFHDQVIDPEAKTFKDLGIEPADIANFTYHYLQSYRSNAYYDLPPATEKERR 366 Query: 283 ED 278 ED Sbjct: 367 ED 368
>YCX9_CHLRE (Q32065) Hypothetical 341.7 kDa protein in psbD-psbC intergenic| region (ORF2971) (ORFB) Length = 2971 Score = 32.7 bits (73), Expect = 0.93 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = -1 Query: 610 VHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIFNLDQIK--AL 437 VH+ +++Y+ R + PF ++A P + + + LPT SI NL ++ L Sbjct: 2127 VHEKNQVVYQLTRHAITHYKKPFKGDYSLAIPTNLYVTDLFLKLPTQSISNLTNVENHNL 2186 Query: 436 SVDNLVSEN 410 S+ N + N Sbjct: 2187 SIKNKIQHN 2195
>RCEH_RHOCA (P19056) Reaction center protein H chain (Photosynthetic reaction| center H subunit) Length = 254 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = -1 Query: 499 NKVPFPLPTPSIFNLDQIKALSVDNLVSENALTFADLEIKPHKL-KGYP 356 N+ PFP+P+P F+L + + V ++ +E A DL ++ + +GYP Sbjct: 52 NQGPFPVPSPKTFDLADGRKIVVPSVENEEAHRRTDLALERTSVNEGYP 100
>DXR_ACIAD (Q6FCG9) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 398 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -3 Query: 167 HPWAGPDLMQTLAPAVALFSHINKKMHDRCIVNFLELEMQSKSDRCKGVNNC 12 H A PD +QT PA+ LF+H + + F L + ++ R G++ C Sbjct: 282 HALAWPDRLQTHVPALDLFTHTHLDFREPDTNKFPALNLARQAMRAGGLSPC 333
>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Activated in prostate cancer protein) Length = 2839 Score = 30.8 bits (68), Expect = 3.5 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 11/89 (12%) Frame = -1 Query: 556 VNLPFPIAKAMASPREMLLNKVPFPLPTP-SIFNLDQIKALSV---DNLVSEN------- 410 + +P P +ASP + + V P+P S L +++ALS+ D L SE+ Sbjct: 2449 LGIPTP-TMTLASPVKRNKSSVRHTQPSPVSRSKLQELRALSMPDLDKLCSEDYSAGPSA 2507 Query: 409 ALTFADLEIKPHKLKGYPTEFLVCYRKGG 323 L +LEI P + G P + C KGG Sbjct: 2508 VLFKTELEITPRRSPGPPAGGVSCPEKGG 2536
>YNJ1_YEAST (P53935) Hypothetical 141.5 kDa protein in YPT53-RHO2 intergenic| region Length = 1240 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 514 LEKP*PLR*EKEDSRILDIRELFHTSFQPDHEQCKHPVHQAH 639 +EKP + D + IRE H S+ DH++ HP H H Sbjct: 489 VEKP------EHDEKSNGIRETLHLSYDHDHKRQNHPHHHYH 524
>CDR_STAAW (Q8NXE8) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = -1 Query: 640 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 461 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 460 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 359 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAU (O52582) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = -1 Query: 640 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 461 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 460 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 359 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAS (Q6GAV6) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = -1 Query: 640 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 461 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 460 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 359 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAR (Q6GIB7) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = -1 Query: 640 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 461 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYVIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 460 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 359 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAN (Q7A6H1) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = -1 Query: 640 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 461 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 460 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 359 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAM (Q99VC0) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = -1 Query: 640 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 461 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 460 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 359 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAC (Q5HHB4) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = -1 Query: 640 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 461 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 460 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 359 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>SYFB_ANAVT (Q3MAZ7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 810 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 16/56 (28%) Frame = -1 Query: 394 DLEIKPHKLKGYPTEFLVCYRK--GGPS--------------FGSTVSEKMGSEDV 275 DL+IKP KL+G P++ ++C K G PS GS V +G +DV Sbjct: 103 DLKIKPAKLRGVPSQGMICSLKELGLPSEVDGIYIFPQENLPLGSDVRPLLGLDDV 158
>SYFB_ANASP (Q8YMH5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 810 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 16/56 (28%) Frame = -1 Query: 394 DLEIKPHKLKGYPTEFLVCYRK--GGPS--------------FGSTVSEKMGSEDV 275 DL+IKP KL+G P++ ++C K G PS GS V +G +DV Sbjct: 103 DLKIKPAKLRGVPSQGMICSLKELGLPSEVDGIYIFPQENLPLGSDVRPLLGLDDV 158 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,422,386 Number of Sequences: 219361 Number of extensions: 2074857 Number of successful extensions: 5399 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5250 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5396 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
