Clone Name | rbaak4e21 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468402.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1592 Score = 208 bits (105), Expect = 2e-50 Identities = 291/353 (82%) Strand = Plus / Minus Query: 291 atcttctcgctgacggtagaaccaaaagacggcccgcctttcctgtagcagacaaggaac 350 |||||||| ||||| ||||||||||||| || ||||| |||| |||||| ||||| ||| Sbjct: 1276 atcttctcactgacagtagaaccaaaagctggaccgcccttccggtagcacacaagaaac 1217 Query: 351 tcggtagggtagcccttcaacttgtgaggcttgatttccaggtccgcaaaagtgagagca 410 || ||||| |||||||| ||||||||| |||| | ||||||| ||| ||||||||| Sbjct: 1216 tcaaccgggtaacccttcaatttgtgaggcacgattccgaggtccgaaaaggtgagagca 1157 Query: 411 ttttcagatactaggttgtctacggagagtgccttgatctgatcaaggttgaaaatggag 470 || ||||| |||||| ||||||| || | ||| || |||||||| ||||||||| || Sbjct: 1156 ttatcagacactagggtgtctacagaaaatgcattaatctgatctttgttgaaaattgat 1097 Query: 471 ggggttggcagaggaaaaggcactttgtttagcagcatttcccttggagaagccatagcc 530 |||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||| Sbjct: 1096 ggggttggcaacggaaagggcactttgtttagcagcatttcccttggagatgcgatagcc 1037 Query: 531 tttgcgataggaaaaggaagattcacgtatcttggatattcgcgaattgtttcatacatc 590 |||| ||||||| ||||| || | ||| | ||| |||| || ||||| ||||||||| Sbjct: 1036 cttgcaataggaagaggaacatcgatgtaccgtggccattcacgtattgtctcatacatc 977 Query: 591 atttcagccagatcatgaacagtgtaaacatccggtccaccaagctcataggt 643 | |||||||| ||||||||||| |||| || ||||||||||| || ||||| Sbjct: 976 agctcagccagctcatgaacagtataaatctctggtccaccaagttcgtaggt 924
>dbj|AK102271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089A08, full insert sequence Length = 1591 Score = 208 bits (105), Expect = 2e-50 Identities = 291/353 (82%) Strand = Plus / Minus Query: 291 atcttctcgctgacggtagaaccaaaagacggcccgcctttcctgtagcagacaaggaac 350 |||||||| ||||| ||||||||||||| || ||||| |||| |||||| ||||| ||| Sbjct: 1275 atcttctcactgacagtagaaccaaaagctggaccgcccttccggtagcacacaagaaac 1216 Query: 351 tcggtagggtagcccttcaacttgtgaggcttgatttccaggtccgcaaaagtgagagca 410 || ||||| |||||||| ||||||||| |||| | ||||||| ||| ||||||||| Sbjct: 1215 tcaaccgggtaacccttcaatttgtgaggcacgattccgaggtccgaaaaggtgagagca 1156 Query: 411 ttttcagatactaggttgtctacggagagtgccttgatctgatcaaggttgaaaatggag 470 || ||||| |||||| ||||||| || | ||| || |||||||| ||||||||| || Sbjct: 1155 ttatcagacactagggtgtctacagaaaatgcattaatctgatctttgttgaaaattgat 1096 Query: 471 ggggttggcagaggaaaaggcactttgtttagcagcatttcccttggagaagccatagcc 530 |||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||| Sbjct: 1095 ggggttggcaacggaaagggcactttgtttagcagcatttcccttggagatgcgatagcc 1036 Query: 531 tttgcgataggaaaaggaagattcacgtatcttggatattcgcgaattgtttcatacatc 590 |||| ||||||| ||||| || | ||| | ||| |||| || ||||| ||||||||| Sbjct: 1035 cttgcaataggaagaggaacatcgatgtaccgtggccattcacgtattgtctcatacatc 976 Query: 591 atttcagccagatcatgaacagtgtaaacatccggtccaccaagctcataggt 643 | |||||||| ||||||||||| |||| || ||||||||||| || ||||| Sbjct: 975 agctcagccagctcatgaacagtataaatctctggtccaccaagttcgtaggt 923
>dbj|AK105460.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-E12, full insert sequence Length = 1396 Score = 182 bits (92), Expect = 9e-43 Identities = 263/320 (82%) Strand = Plus / Minus Query: 324 ccgcctttcctgtagcagacaaggaactcggtagggtagcccttcaacttgtgaggcttg 383 ||||| |||| |||||| ||||| ||||| ||||| |||||||| ||||||||| | Sbjct: 1238 ccgcccttccggtagcacacaagaaactcaaccgggtaacccttcaatttgtgaggcacg 1179 Query: 384 atttccaggtccgcaaaagtgagagcattttcagatactaggttgtctacggagagtgcc 443 ||| | ||||||| ||| ||||||||||| ||||| |||||| ||||||| || | ||| Sbjct: 1178 attccgaggtccgaaaaggtgagagcattatcagacactagggtgtctacagaaaatgca 1119 Query: 444 ttgatctgatcaaggttgaaaatggagggggttggcagaggaaaaggcactttgtttagc 503 || |||||||| ||||||||| || |||||||||| ||||| ||||||||||||||| Sbjct: 1118 ttaatctgatctttgttgaaaattgatggggttggcaacggaaagggcactttgtttagc 1059 Query: 504 agcatttcccttggagaagccatagcctttgcgataggaaaaggaagattcacgtatctt 563 ||||||||||||||||| || |||||| |||| ||||||| ||||| || | ||| | | Sbjct: 1058 agcatttcccttggagatgcgatagcccttgcaataggaagaggaacatcgatgtaccgt 999 Query: 564 ggatattcgcgaattgtttcatacatcatttcagccagatcatgaacagtgtaaacatcc 623 || |||| || ||||| |||||||||| |||||||| ||||||||||| |||| || Sbjct: 998 ggccattcacgtattgtctcatacatcagctcagccagctcatgaacagtataaatctct 939 Query: 624 ggtccaccaagctcataggt 643 ||||||||||| || ||||| Sbjct: 938 ggtccaccaagttcgtaggt 919
>gb|BT018369.1| Zea mays clone EL01N0305F07.d mRNA sequence Length = 1591 Score = 109 bits (55), Expect = 1e-20 Identities = 265/335 (79%) Strand = Plus / Minus Query: 284 gctccccatcttctcgctgacggtagaaccaaaagacggcccgcctttcctgtagcagac 343 ||||| |||||||||||| ||||| || || || || |||||||| |||||||| | || Sbjct: 1289 gctcctcatcttctcgctcacggtcgagccgaacgatggcccgcccttcctgtaagacac 1230 Query: 344 aaggaactcggtagggtagcccttcaacttgtgaggcttgatttccaggtccgcaaaagt 403 ||| |||| ||||| || |||| ||| |||||| |||| ||||| ||||||| Sbjct: 1229 caggtactccaccgggtaccctttcagcttctgaggcatgatgctgaggtcttcaaaagt 1170 Query: 404 gagagcattttcagatactaggttgtctacggagagtgccttgatctgatcaaggttgaa 463 ||||||| ||| || || |||||||| || | | ||| ||||| || || |||||||| Sbjct: 1169 cagagcatcttccgagacgaggttgtccacagcaaatgcgttgatttggtctaggttgaa 1110 Query: 464 aatggagggggttggcagaggaaaaggcactttgtttagcagcatttcccttggagaagc 523 ||||| |||||||| || || || |||||||| || |||||||| |||||||| ||||| Sbjct: 1109 tatggacggggttggaagcgggaacggcactttattgagcagcatctcccttggggaagc 1050 Query: 524 catagcctttgcgataggaaaaggaagattcacgtatcttggatattcgcgaattgtttc 583 |||||| |||| | ||||| ||| | ||| || |||||||| ||||||| ||||| || Sbjct: 1049 aatagcccttgcaacaggaagagggacattgacatatcttggccattcgcggattgtctc 990 Query: 584 atacatcatttcagccagatcatgaacagtgtaaa 618 ||||||| |||||||| ||||| |||||||||| Sbjct: 989 gtacatcagctcagccagctcatggacagtgtaaa 955
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 101 bits (51), Expect = 3e-18 Identities = 105/123 (85%) Strand = Plus / Minus Query: 409 cattttcagatactaggttgtctacggagagtgccttgatctgatcaaggttgaaaatgg 468 |||| ||||| |||||| ||||||| || | ||| || |||||||| ||||||||| | Sbjct: 35035628 cattatcagacactagggtgtctacagaaaatgcattaatctgatctttgttgaaaattg 35035569 Query: 469 agggggttggcagaggaaaaggcactttgtttagcagcatttcccttggagaagccatag 528 | |||||||||| ||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 35035568 atggggttggcaacggaaagggcactttgtttagcagcatttcccttggagatgcgatag 35035509 Query: 529 cct 531 ||| Sbjct: 35035508 cct 35035506 Score = 69.9 bits (35), Expect = 1e-08 Identities = 98/119 (82%) Strand = Plus / Minus Query: 291 atcttctcgctgacggtagaaccaaaagacggcccgcctttcctgtagcagacaaggaac 350 |||||||| ||||| ||||||||||||| || ||||| |||| |||||| ||||| ||| Sbjct: 35035824 atcttctcactgacagtagaaccaaaagctggaccgcccttccggtagcacacaagaaac 35035765 Query: 351 tcggtagggtagcccttcaacttgtgaggcttgatttccaggtccgcaaaagtgagagc 409 || ||||| |||||||| ||||||||| |||| | ||||||| ||| |||||||| Sbjct: 35035764 tcaaccgggtaacccttcaatttgtgaggcacgattccgaggtccgaaaaggtgagagc 35035706 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 598 ccagatcatgaacagtgtaaacatccggtccaccaag 634 |||||||||||||||| |||| || ||||||||||| Sbjct: 34167030 ccagatcatgaacagtataaatctctggtccaccaag 34167066 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 598 ccagatcatgaacagtgtaaacatccggtccaccaag 634 |||||||||||||||| |||| || ||||||||||| Sbjct: 34137313 ccagatcatgaacagtataaatctctggtccaccaag 34137349 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 598 ccagatcatgaacagtgtaaacatccggtccaccaag 634 |||||||||||||||| |||| || ||||||||||| Sbjct: 34112762 ccagatcatgaacagtataaatctctggtccaccaag 34112798
>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643F09 Length = 161001 Score = 101 bits (51), Expect = 3e-18 Identities = 105/123 (85%) Strand = Plus / Minus Query: 409 cattttcagatactaggttgtctacggagagtgccttgatctgatcaaggttgaaaatgg 468 |||| ||||| |||||| ||||||| || | ||| || |||||||| ||||||||| | Sbjct: 95969 cattatcagacactagggtgtctacagaaaatgcattaatctgatctttgttgaaaattg 95910 Query: 469 agggggttggcagaggaaaaggcactttgtttagcagcatttcccttggagaagccatag 528 | |||||||||| ||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 95909 atggggttggcaacggaaagggcactttgtttagcagcatttcccttggagatgcgatag 95850 Query: 529 cct 531 ||| Sbjct: 95849 cct 95847 Score = 69.9 bits (35), Expect = 1e-08 Identities = 98/119 (82%) Strand = Plus / Minus Query: 291 atcttctcgctgacggtagaaccaaaagacggcccgcctttcctgtagcagacaaggaac 350 |||||||| ||||| ||||||||||||| || ||||| |||| |||||| ||||| ||| Sbjct: 96165 atcttctcactgacagtagaaccaaaagctggaccgcccttccggtagcacacaagaaac 96106 Query: 351 tcggtagggtagcccttcaacttgtgaggcttgatttccaggtccgcaaaagtgagagc 409 || ||||| |||||||| ||||||||| |||| | ||||||| ||| |||||||| Sbjct: 96105 tcaaccgggtaacccttcaatttgtgaggcacgattccgaggtccgaaaaggtgagagc 96047
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 101 bits (51), Expect = 3e-18 Identities = 105/123 (85%) Strand = Plus / Minus Query: 409 cattttcagatactaggttgtctacggagagtgccttgatctgatcaaggttgaaaatgg 468 |||| ||||| |||||| ||||||| || | ||| || |||||||| ||||||||| | Sbjct: 8791 cattatcagacactagggtgtctacagaaaatgcattaatctgatctttgttgaaaattg 8732 Query: 469 agggggttggcagaggaaaaggcactttgtttagcagcatttcccttggagaagccatag 528 | |||||||||| ||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 8731 atggggttggcaacggaaagggcactttgtttagcagcatttcccttggagatgcgatag 8672 Query: 529 cct 531 ||| Sbjct: 8671 cct 8669 Score = 69.9 bits (35), Expect = 1e-08 Identities = 98/119 (82%) Strand = Plus / Minus Query: 291 atcttctcgctgacggtagaaccaaaagacggcccgcctttcctgtagcagacaaggaac 350 |||||||| ||||| ||||||||||||| || ||||| |||| |||||| ||||| ||| Sbjct: 8987 atcttctcactgacagtagaaccaaaagctggaccgcccttccggtagcacacaagaaac 8928 Query: 351 tcggtagggtagcccttcaacttgtgaggcttgatttccaggtccgcaaaagtgagagc 409 || ||||| |||||||| ||||||||| |||| | ||||||| ||| |||||||| Sbjct: 8927 tcaaccgggtaacccttcaatttgtgaggcacgattccgaggtccgaaaaggtgagagc 8869
>dbj|AK099813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099K24, full insert sequence Length = 2648 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 576 attgtttcatacatcatttcagccagatcatgaacagtgtaaacatccggtccaccaag 634 ||||| |||||||||| |||||||||||||||||||| |||| || ||||||||||| Sbjct: 1420 attgtctcatacatcagctcagccagatcatgaacagtataaatctctggtccaccaag 1362
>dbj|AK072342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052N08, full insert sequence Length = 3232 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 576 attgtttcatacatcatttcagccagatcatgaacagtgtaaacatccggtccaccaag 634 ||||| |||||||||| |||||||||||||||||||| |||| || ||||||||||| Sbjct: 1882 attgtctcatacatcagctcagccagatcatgaacagtataaatctctggtccaccaag 1824
>dbj|AK072332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038L20, full insert sequence Length = 4792 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 576 attgtttcatacatcatttcagccagatcatgaacagtgtaaacatccggtccaccaag 634 ||||| |||||||||| |||||||||||||||||||| |||| || ||||||||||| Sbjct: 4451 attgtctcatacatcagctcagccagatcatgaacagtataaatctctggtccaccaag 4393
>dbj|AK067830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122A20, full insert sequence Length = 4651 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 576 attgtttcatacatcatttcagccagatcatgaacagtgtaaacatccggtccaccaag 634 ||||| |||||||||| |||||||||||||||||||| |||| || ||||||||||| Sbjct: 3422 attgtctcatacatcagctcagccagatcatgaacagtataaatctctggtccaccaag 3364
>dbj|AK067815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118P06, full insert sequence Length = 3020 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 576 attgtttcatacatcatttcagccagatcatgaacagtgtaaacatccggtccaccaag 634 ||||| |||||||||| |||||||||||||||||||| |||| || ||||||||||| Sbjct: 1867 attgtctcatacatcagctcagccagatcatgaacagtataaatctctggtccaccaag 1809
>gb|AY137337.1| Brachylophon curtisii phytochrome C (PHYC) gene, partial cds Length = 1152 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 179 atcagcggcagatggcaagaaaa 201 ||||||||||||||||||||||| Sbjct: 518 atcagcggcagatggcaagaaaa 540
>emb|AL663090.15| Mouse DNA sequence from clone RP23-99M13 on chromosome 11, complete sequence Length = 165824 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 602 atcatgaacagtgtaaacatcc 623 |||||||||||||||||||||| Sbjct: 126453 atcatgaacagtgtaaacatcc 126432
>gb|AY617816.1| Sterkiella histriomuscorum clone UGC1O0005_M15_R genomic sequence Length = 591 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 213 aacaattttatcttcaaaactaaat 237 ||||||||||||||||||| ||||| Sbjct: 168 aacaattttatcttcaaaagtaaat 144
>gb|AC121897.2| Mus musculus BAC clone RP24-160L24 from 3, complete sequence Length = 143234 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 195 aagaaaacagaacacaagaacaatt 219 ||||||||| ||||||||||||||| Sbjct: 15503 aagaaaacaaaacacaagaacaatt 15479
>emb|AL391883.17| Human DNA sequence from clone RP11-91K11 on chromosome 1 Contains the 5' end of the gene for a novel protein (LOC255104), the gene for a novel protein (FLJ20225), a novel gene and the 5' end of the gene for a novel protein (KIAA0459), complete sequence Length = 126371 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 atttatattctgcaattgttg 21 ||||||||||||||||||||| Sbjct: 53578 atttatattctgcaattgttg 53558
>gb|AC164970.2| Mus musculus BAC clone RP24-222P1 from chromosome 16, complete sequence Length = 202577 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 tggagggggttggcagaggaa 486 ||||||||||||||||||||| Sbjct: 65781 tggagggggttggcagaggaa 65801
>gb|AC093857.2| Homo sapiens BAC clone RP11-525J21 from 4, complete sequence Length = 139224 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 agaacaattttatcttcaaaa 231 ||||||||||||||||||||| Sbjct: 75986 agaacaattttatcttcaaaa 76006
>gb|AC016571.7| Homo sapiens chromosome 5 clone CTB-109A12, complete sequence Length = 73304 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 gatggcaagaaaacagaacac 209 ||||||||||||||||||||| Sbjct: 11802 gatggcaagaaaacagaacac 11822
>gb|AC009185.6|AC009185 Homo sapiens chromosome 5 clone CTC-248O19, complete sequence Length = 87973 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 gatggcaagaaaacagaacac 209 ||||||||||||||||||||| Sbjct: 86773 gatggcaagaaaacagaacac 86793
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 209 caagaacaattttatcttcaaaact 233 ||||||||||||||| ||||||||| Sbjct: 13505343 caagaacaattttatgttcaaaact 13505367
>gb|AC027657.2|AC027657 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040H08, complete sequence Length = 125679 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 209 caagaacaattttatcttcaaaact 233 ||||||||||||||| ||||||||| Sbjct: 90014 caagaacaattttatgttcaaaact 90038
>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0032L17 Length = 165808 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 598 ccagatcatgaacagtgtaaacatccggtccaccaag 634 |||||||||||||||| |||| || ||||||||||| Sbjct: 94544 ccagatcatgaacagtataaatctctggtccaccaag 94580 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 598 ccagatcatgaacagtgtaaacatccggtccaccaag 634 |||||||||||||||| |||| || ||||||||||| Sbjct: 64827 ccagatcatgaacagtataaatctctggtccaccaag 64863 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 598 ccagatcatgaacagtgtaaacatccggtccaccaag 634 |||||||||||||||| |||| || ||||||||||| Sbjct: 40276 ccagatcatgaacagtataaatctctggtccaccaag 40312
>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689B12 Length = 154745 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 598 ccagatcatgaacagtgtaaacatccggtccaccaag 634 |||||||||||||||| |||| || ||||||||||| Sbjct: 2303 ccagatcatgaacagtataaatctctggtccaccaag 2339
>gb|AC025786.16| Mus musculus chromosome 3, clone RP23-169H9, complete sequence Length = 181293 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 195 aagaaaacagaacacaagaacaatt 219 ||||||||| ||||||||||||||| Sbjct: 110894 aagaaaacaaaacacaagaacaatt 110870
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 209 caagaacaattttatcttcaaaact 233 ||||||||||||||| ||||||||| Sbjct: 13512685 caagaacaattttatgttcaaaact 13512709
>emb|AL672274.7| Mouse DNA sequence from clone RP23-351G20 on chromosome X, complete sequence Length = 189982 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 195 aagaaaacagaacacaagaacaatt 219 |||||||||||||| |||||||||| Sbjct: 168984 aagaaaacagaacaaaagaacaatt 168960
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggcaagaaaacagaacacaa 211 |||||||||||||||||||| Sbjct: 2467426 ggcaagaaaacagaacacaa 2467407
>gb|AC152185.1| Medicago truncatula chromosome 2 BAC clone mth2-97e5, complete sequence Length = 132467 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 caattttatcttcaaaactaaatg 238 |||||| ||||||||||||||||| Sbjct: 32028 caatttcatcttcaaaactaaatg 32005
>gb|AY569331.1| Lycopersicon pimpinellifolium 9DC resistance gene cluster Length = 44539 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ttttatcttcaaaactaaat 237 |||||||||||||||||||| Sbjct: 35804 ttttatcttcaaaactaaat 35785
>gb|AE017263.1| Mesoplasma florum L1 complete genome Length = 793224 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 acaattttatcttcaaaact 233 |||||||||||||||||||| Sbjct: 780777 acaattttatcttcaaaact 780796
>gb|AC131335.11| Mus musculus chromosome 8, clone RP23-32D9, complete sequence Length = 190133 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 acagaacacaagaacaattt 220 |||||||||||||||||||| Sbjct: 83267 acagaacacaagaacaattt 83286
>gb|BC063370.1| Xenopus tropicalis succinate-CoA ligase, ADP-forming, beta subunit, mRNA (cDNA clone MGC:75984 IMAGE:5384348), complete cds Length = 2761 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ggcagaggaaaaggcacttt 496 |||||||||||||||||||| Sbjct: 318 ggcagaggaaaaggcacttt 337
>gb|AC149631.3| Rhinolophus ferrumequinum clone VMRC7-80B12, complete sequence Length = 142320 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 aaaagtgagagcattttcag 417 |||||||||||||||||||| Sbjct: 73344 aaaagtgagagcattttcag 73363
>gb|AC132319.3| Mus musculus BAC clone RP24-258I12 from chromosome 19, complete sequence Length = 193053 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 aacaattttatcttcaaaactaaa 236 |||||||||||| ||||||||||| Sbjct: 76661 aacaattttatcatcaaaactaaa 76684
>gb|AC004014.2| Homo sapiens BAC clone CTB-22K14 from 7, complete sequence Length = 172241 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 atcgtgcattttcttattgatatg 107 ||||||||||||||| |||||||| Sbjct: 49593 atcgtgcattttctttttgatatg 49616
>gb|AC003085.2| Homo sapiens BAC clone CTB-94H21 from 7, complete sequence Length = 124836 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 atttcccttggagaagccat 526 |||||||||||||||||||| Sbjct: 7726 atttcccttggagaagccat 7745
>gb|AC107231.9| Mus musculus chromosome 14, clone RP23-475A2, complete sequence Length = 216217 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 ataggaaaaggaagattcac 556 |||||||||||||||||||| Sbjct: 58380 ataggaaaaggaagattcac 58361
>gb|AC142286.1| Pan troglodytes BAC clone RP43-169G24 from 7, complete sequence Length = 194546 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 atttcccttggagaagccat 526 |||||||||||||||||||| Sbjct: 130837 atttcccttggagaagccat 130818
>gb|AC133139.23| Medicago truncatula clone mth1-8d23, complete sequence Length = 121016 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cagaacacaagaacaatttt 221 |||||||||||||||||||| Sbjct: 24406 cagaacacaagaacaatttt 24425
>gb|AC122727.24| Medicago truncatula clone mth2-13b8, complete sequence Length = 128564 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 cagaacacaagaacaatttt 221 |||||||||||||||||||| Sbjct: 104160 cagaacacaagaacaatttt 104141
>emb|AL391826.7| Human DNA sequence from clone RP11-328F17 on chromosome 1, complete sequence Length = 68224 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 ggagagtgccttgatctgat 453 |||||||||||||||||||| Sbjct: 27813 ggagagtgccttgatctgat 27794
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggcaagaaaacagaacacaa 211 |||||||||||||||||||| Sbjct: 2456485 ggcaagaaaacagaacacaa 2456466
>emb|AL137059.20| Human DNA sequence from clone RP11-125I23 on chromosome 13 Contains the MTIF3 gene for mitochondrial translational initiation factor 3, the GTF3A gene for general transcription factor IIIA (AP2, TFIIIA) and two CpG islands, complete sequence Length = 166141 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 agcagcatttcccttggaga 520 |||||||||||||||||||| Sbjct: 60900 agcagcatttcccttggaga 60881
>ref|NM_203902.1| Xenopus tropicalis succinate-CoA ligase, ADP-forming, beta subunit (sucla2), mRNA Length = 2761 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ggcagaggaaaaggcacttt 496 |||||||||||||||||||| Sbjct: 318 ggcagaggaaaaggcacttt 337
>emb|AJ002236.1|LPJ002236 Lycopersicon pimpinellifolium Cf-9 resistance gene cluster Length = 48710 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ttttatcttcaaaactaaat 237 |||||||||||||||||||| Sbjct: 32814 ttttatcttcaaaactaaat 32795
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggcaagaaaacagaacacaa 211 |||||||||||||||||||| Sbjct: 2463909 ggcaagaaaacagaacacaa 2463890
>gb|AC110292.6| Homo sapiens chromosome 15, clone RP11-959F21, complete sequence Length = 197175 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tggcagaggaaaaggcactt 495 |||||||||||||||||||| Sbjct: 63040 tggcagaggaaaaggcactt 63059
>gb|AC106000.6| Homo sapiens chromosome 15, clone RP11-61N5, complete sequence Length = 159704 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tggcagaggaaaaggcactt 495 |||||||||||||||||||| Sbjct: 119974 tggcagaggaaaaggcactt 119993
>gb|AC007213.6| Arabidopsis thaliana chromosome 2 clone T23O15 map RNS1, complete sequence Length = 81341 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cttattgatatgggaaaaaa 115 |||||||||||||||||||| Sbjct: 68332 cttattgatatgggaaaaaa 68313
>gb|AC104462.1| Homo sapiens chromosome 1 clone RP11-522M21, complete sequence Length = 183271 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 aaaacagaacacaagaacaa 217 |||||||||||||||||||| Sbjct: 77662 aaaacagaacacaagaacaa 77643
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 aaaagtgagagcattttcag 417 |||||||||||||||||||| Sbjct: 1560691 aaaagtgagagcattttcag 1560710
>gb|AC008166.2| Homo sapiens BAC clone RP11-155J2 from 2, complete sequence Length = 176991 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 caagaaaacagaacacaagaacaa 217 ||||||||||||| |||||||||| Sbjct: 47007 caagaaaacagaaaacaagaacaa 46984
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggcaagaaaacagaacacaa 211 |||||||||||||||||||| Sbjct: 2446883 ggcaagaaaacagaacacaa 2446864
>emb|AL117200.2|CEY50E8A Caenorhabditis elegans YAC Y50E8A, complete sequence Length = 61864 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 gaggaaaaggcactttgttt 500 |||||||||||||||||||| Sbjct: 58402 gaggaaaaggcactttgttt 58383
>emb|AL845282.12| Zebrafish DNA sequence from clone DKEY-28P18 in linkage group 21, complete sequence Length = 192865 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 209 caagaacaattttatcttcaaaactaaatgac 240 |||||||| |||||| ||| |||||||||||| Sbjct: 113963 caagaacacttttatgttctaaactaaatgac 113994
>emb|CR855637.2| Xenopus tropicalis finished cDNA, clone TGas028f15 Length = 1924 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ggcagaggaaaaggcacttt 496 |||||||||||||||||||| Sbjct: 318 ggcagaggaaaaggcacttt 337
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggcaagaaaacagaacacaa 211 |||||||||||||||||||| Sbjct: 3254834 ggcaagaaaacagaacacaa 3254815
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggcaagaaaacagaacacaa 211 |||||||||||||||||||| Sbjct: 3184878 ggcaagaaaacagaacacaa 3184859
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggcaagaaaacagaacacaa 211 |||||||||||||||||||| Sbjct: 2339434 ggcaagaaaacagaacacaa 2339415
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggcaagaaaacagaacacaa 211 |||||||||||||||||||| Sbjct: 2368788 ggcaagaaaacagaacacaa 2368769
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggcaagaaaacagaacacaa 211 |||||||||||||||||||| Sbjct: 2530305 ggcaagaaaacagaacacaa 2530286 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,471,698 Number of Sequences: 3902068 Number of extensions: 6471698 Number of successful extensions: 122649 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122210 Number of HSP's gapped (non-prelim): 434 length of query: 643 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 620 effective length of database: 17,143,297,704 effective search space: 10628844576480 effective search space used: 10628844576480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)