>COX3_LEITA (P14546) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 284

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = +3

Query: 144 YIHMLFFLFTVGIRLCEDCFRLSLSICWRNKLWVILCSIRIFQNCFSWIFIHPCLL 311
           +I   F  F   +  C  C    L +     L+ + C IR  Q CF W  I   LL
Sbjct: 41  FIDYCFICFFACLLFCLVCLLCDLFVDSLRGLFDVCCFIRCIQYCFVWFIISELLL 96

>CAD20_HUMAN (Q9HBT6) Cadherin-20 precursor|
          Length = 801

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 341 QYLMKEGGLIKETWMDEDPR-EAILKYADAAKNDPKFIAPAYAQTQPE 201
           QY ++   L + T    +P  E I+K  D   N+PKF+   Y  T PE
Sbjct: 129 QYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPE 176

>P53_RABIT (Q95330) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 391

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 302 WMDEDPREAILKYADAAKNDPKFIAPAYAQTQPETVFAESDSDGEEKK*H 153
           W++EDP E +   A  A   P   APA A   P T +  S S   +K  H
Sbjct: 52  WLNEDPEEGLRVPAAPAPEAPAPAAPALAAPAPATSWPLSSSVPSQKTYH 101

>DP2L_PYRKO (Q5JET0) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
            [Contains: Pko polC intein (Pko pol II intein)]
          Length = 1798

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
 Frame = -1

Query: 551  APRKQSVDDYEVQPLIHNPHALPLFR-DQPSRKRQREKMMKDPLKSHKPEAPVSGPGFGG 375
            A R ++VD++ V   I N H +P  R +  S  RQ  + +K   K  +P      P  GG
Sbjct: 1567 AERIRAVDEHHVAETIINSHLVPDLRGNLRSFTRQEFRCVKCNTKYRRPPLTGKCPKCGG 1626

Query: 374  KIGTT--KGS----------LLTQYLMKE 324
            KI  T  KG+          L+T+Y +K+
Sbjct: 1627 KIVLTVSKGAIEKYLPTAKMLVTKYRVKD 1655

>LPP_HUMAN (Q93052) Lipoma-preferred partner (LIM domain-containing preferred|
           translocation partner in lipoma)
          Length = 612

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
 Frame = +1

Query: 280 SLGSSSIHVSLIKPPSFMRYCVSKLPFVVP---------ILPPNPGPLTGASGLCDLRGS 432
           S G+ SI VS  +PP      V+  P   P          LPP P PL  +S L  + G+
Sbjct: 28  SFGNPSISVSTQQPPKKFAPVVAPKPKYNPYKQPGGEGDFLPPPPPPLDDSSALPSISGN 87

Query: 433 F 435
           F
Sbjct: 88  F 88

>MUTS_OCEIH (Q8CXG6) DNA mismatch repair protein mutS|
          Length = 867

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -1

Query: 332 MKEGGLIKETWMDEDPREAILKYADAAKNDPKFIAPAYAQTQPET 198
           +KEG LIKE + D+     +  Y DA++N  K+IA    Q + ET
Sbjct: 410 IKEGSLIKEGYHDQ-----LDTYRDASRNGKKWIAQLEHQEREET 449

>RPOB_THETN (Q8R7U6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1234

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -1

Query: 482 LFRDQPSRKRQREKMMKDPLKSHKPEAPVSGPGFGGKIGTTKGSLLTQYLMKEGGLIKET 303
           L  D  +R      M +  +   KPEAP+ G G   K     G+++   L K  G++++ 
Sbjct: 649 LENDDANRALMGSNMQRQAVPLLKPEAPIVGTGMEYKAAVDSGAVI---LAKNDGIVEKV 705

Query: 302 WMDE 291
             D+
Sbjct: 706 TADK 709

>DP2L_PYRHO (O57861) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
            [Contains: Pho polC intein (Pho pol II intein)]
          Length = 1431

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
 Frame = -1

Query: 551  APRKQSVDDYEVQPLIHNPHALPLFR-DQPSRKRQREKMMKDPLKSHKPEAPVSGPGFGG 375
            A R ++VD+++V   I N H +P  R +  S  RQ  + +K   K  +P      P  GG
Sbjct: 1248 ARRIRAVDEHKVAETILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFRRPPLDGKCPICGG 1307

Query: 374  KIGTT--KGSLLTQYLMKEGGLIKETWMDEDPREAI 273
            KI  T  KG+ + +YL     L+ E  +    R+ I
Sbjct: 1308 KIVLTVSKGA-IEKYLGTAKMLVTEYKVKNYTRQRI 1342

>ATP7A_HUMAN (Q04656) Copper-transporting ATPase 1 (EC 3.6.3.4) (Copper pump 1)|
           (Menkes disease-associated protein)
          Length = 1500

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 659 RINQVFATVGDKKEGGTHILYDPSVSQRGALVCVGRAPRKQSVDDYEVQPLIHNPHALPL 480
           ++N V       +E    I+YDP +     L        ++++DD     +IHNP  LP+
Sbjct: 32  KVNGVHHIKVSLEEKNATIIYDPKLQTPKTL--------QEAIDDMGFDAVIHNPDPLPV 83

Query: 479 FRD 471
             D
Sbjct: 84  LTD 86

>ENPL_CATRO (P35016) Endoplasmin homolog precursor (GRP94 homolog)|
          Length = 817

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 28/130 (21%), Positives = 49/130 (37%)
 Frame = -1

Query: 554  RAPRKQSVDDYEVQPLIHNPHALPLFRDQPSRKRQREKMMKDPLKSHKPEAPVSGPGFGG 375
            R  + Q++ D   Q  +     L +    P  K  RE+++KD                  
Sbjct: 690  RIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD------------------ 731

Query: 374  KIGTTKGSLLTQYLMKEGGLIKETWMDEDPREAILKYADAAKNDPKFIAPAYAQTQPETV 195
                 +    T  LM +  L++  +M  DP+E      D+ K+  K    A  + + +T 
Sbjct: 732  --AEDESVKQTARLMYQTALMESGFMLNDPKEFASSIYDSVKSSLKISPDATVEEEDDTE 789

Query: 194  FAESDSDGEE 165
             AE++S   E
Sbjct: 790  EAEAESGTTE 799

>MRAY_PELLD (Q3B126) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 368

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +1

Query: 268 FKIASLGSSSIHVSLIKPPSFMRYCVSKLPFVVPILPPNPGPLTGASGLCDLRGSFIIFS 447
           F+ ++   +S+ ++L+  P F+RY  S+  F+ P+    P        L  + G  IIFS
Sbjct: 26  FRASAAAITSLLITLLAGPGFIRYLRSR--FIEPVKEEAPAEHRKKKDLPTMGGLLIIFS 83

Query: 448 L 450
           +
Sbjct: 84  I 84

>SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)|
          Length = 1300

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 479  FRDQPSRKRQREKMMKDPLKSHKPEAPVSGPGFGGKIG 366
            FR +       E+  + PLK+ +P++P + PG GG  G
Sbjct: 915  FRSKSPGLGAPEEPQEIPLKTERPDSPAAAPGSGGAPG 952

>SALL3_MOUSE (Q62255) Sal-like protein 3 (Spalt-like protein 3) (MSal) (Fragment)|
          Length = 1323

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 479  FRDQPSRKRQREKMMKDPLKSHKPEAPVSGPGFGGKIGTTKG 354
            FR +      +E   + PLK+ + ++P  GPG GG +  T G
Sbjct: 899  FRSKSPGLGHQEDPQEIPLKTERLDSPPPGPGNGGALDLTAG 940

>THR_DROME (P42286) Protein three rows|
          Length = 1379

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 548  PRKQSVDDYEVQPLIHNPHALPLFRDQPSRKRQREKMMKDPLKSHKPEAP 399
            P K+++ D  +  L  N H L L   +P RK+Q   M    L   +P +P
Sbjct: 1008 PEKEAIKDVAISDLASNMHLLQLV--EPIRKQQLLNMASPNLLKMRPHSP 1055


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,628,020
Number of Sequences: 219361
Number of extensions: 2115646
Number of successful extensions: 6104
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6102
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)