ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags9p22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT018848.1| Zea mays clone EL01N0555E10.d mRNA sequence Length = 2515 Score = 543 bits (274), Expect = e-151 Identities = 461/522 (88%), Gaps = 1/522 (0%) Strand = Plus / Minus Query: 162 tttctcttcaccgtcggaatcagactctgcgaagactgtttccggctgagtttgagcata 221 |||||||||| ||| ||||||||||| || || || | || |||||| ||||| | ||| Sbjct: 1823 tttctcttcattgtctgaatcagactccgcaaaaacaggtttcggctgggtttgggaata 1764 Query: 222 tgctggcgcaataaactttgggtcattctttgcagcatccgcatatttcaaaattgcttc 281 ||||||||||||||||||||||| |||| |||||||| ||||| |||||||| ||||| Sbjct: 1763 agctggcgcaataaactttgggtctttctccgcagcatcagcatacttcaaaatggcttc 1704 Query: 282 tcttggatcttcatccatccatgtctccttaattaaaccaccctccttcatgagatactg 341 ||||||||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||| Sbjct: 1703 tcttggatcttcatccatccaggtctccttaattaa-ccaccttccttcaagagatactg 1645 Query: 342 tgtcagcaagctgccttttgtcgtgccaattttaccaccaaaccctggaccactaacagg 401 ||||||||| ||||||||||| || || | | | |||||||| | |||||| ||||||| Sbjct: 1644 tgtcagcaaactgccttttgtagtacccactcttccaccaaaactgggaccattaacagg 1585 Query: 402 tgcttctggtttgtgtgatttgagggggtctttcatcatcttctctctttggcgtttacg 461 ||||||||||||||| |||||||| |||||||||| |||||||||||||| || ||||| Sbjct: 1584 tgcttctggtttgtgggatttgagtgggtctttcagtatcttctctctttgacgcttacg 1525 Query: 462 gcttggttgatctctgaatagaggcagtgcatgtggattgtgtattaaaggttgcacctc 521 ||||||||||||||||| || |||| |||||||||||||||||| | |||||||||||| Sbjct: 1524 acttggttgatctctgaaaagtggcaatgcatgtggattgtgtatgacaggttgcacctc 1465 Query: 522 ataatcatcaacagattgtttccttggtgctcgtccaacacacacaagagctcccctctg 581 | ||||||||||||| | |||||||||||||||||||||||| |||||||||||||| || Sbjct: 1464 aaaatcatcaacagactttttccttggtgctcgtccaacacatacaagagctcccctttg 1405 Query: 582 actaacagaaggatcgtacaagatatgagtcccaccttccttcttgtccccaactgttgc 641 ||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||| Sbjct: 1404 actaatagaaggatcgtacaggatatgagtcccaccttctttcttgtctccaactgttgc 1345 Query: 642 gaacacctgattaatccttggatgccagagcgaccttatcac 683 |||||||| || || |||||||||||||| |||||||||| Sbjct: 1344 aaacacctggttgattcttggatgccagaggcaccttatcac 1303
>ref|NM_196906.1| Oryza sativa (japonica cultivar-group) putative WD domain containing protein (OSJNBa0071K18.5), mRNA Length = 2350 Score = 531 bits (268), Expect = e-147 Identities = 463/528 (87%) Strand = Plus / Minus Query: 156 ttattttttctcttcaccgtcggaatcagactctgcgaagactgtttccggctgagtttg 215 ||||||||||||||| || || ||||| |||||||| || || | || |||||||||||| Sbjct: 1941 ttattttttctcttcgccttcagaatccgactctgcaaatacaggtttcggctgagtttg 1882 Query: 216 agcatatgctggcgcaataaactttgggtcattctttgcagcatccgcatatttcaaaat 275 | ||||||||| ||||| |||||||| || |||| ||||||||| ||||| |||||||| Sbjct: 1881 ggaatatgctggtgcaatgaactttggatctttctctgcagcatctgcatacttcaaaat 1822 Query: 276 tgcttctcttggatcttcatccatccatgtctccttaattaaaccaccctccttcatgag 335 ||| ||||||||||| || |||||||||||||||||||| |||||||||||||||| ||| Sbjct: 1821 tgcctctcttggatcctcgtccatccatgtctccttaatcaaaccaccctccttcaagag 1762 Query: 336 atactgtgtcagcaagctgccttttgtcgtgccaattttaccaccaaaccctggaccact 395 |||||||||| ||||||||||||||| || || | | | |||||||| || |||||| | Sbjct: 1761 gtactgtgtcaacaagctgccttttgtagtaccgactcttccaccaaagccaggaccatt 1702 Query: 396 aacaggtgcttctggtttgtgtgatttgagggggtctttcatcatcttctctctttggcg 455 || || ||||| ||||| ||||||||||| |||||||||| ||||||||||||||||| Sbjct: 1701 gactggagcttcaggtttatgtgatttgagcgggtctttcagtatcttctctctttggcg 1642 Query: 456 tttacggcttggttgatctctgaatagaggcagtgcatgtggattgtgtattaaaggttg 515 ||| || |||||||||||||| ||||| ||||||||||||||||| ||||||| |||||| Sbjct: 1641 tttccgacttggttgatctctaaatagtggcagtgcatgtggattatgtattacaggttg 1582 Query: 516 cacctcataatcatcaacagattgtttccttggtgctcgtccaacacacacaagagctcc 575 ||||||| |||| |||||||||| |||||| ||||||||||||||||| ||||| ||||| Sbjct: 1581 cacctcaaaatcgtcaacagattttttcctaggtgctcgtccaacacatacaagtgctcc 1522 Query: 576 cctctgactaacagaaggatcgtacaagatatgagtcccaccttccttcttgtccccaac 635 |||||||||| ||||||||| || ||||||||||| |||||||||||||| |||||||| Sbjct: 1521 tctctgactaatagaaggatcatataagatatgagtaccaccttccttcttatccccaac 1462 Query: 636 tgttgcgaacacctgattaatccttggatgccagagcgaccttatcac 683 ||||||||| || |||||||||||||||||||| || |||||||||| Sbjct: 1461 tgttgcgaatacttgattaatccttggatgccatagacaccttatcac 1414
>dbj|AK068906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002M22, full insert sequence Length = 2514 Score = 531 bits (268), Expect = e-147 Identities = 463/528 (87%) Strand = Plus / Minus Query: 156 ttattttttctcttcaccgtcggaatcagactctgcgaagactgtttccggctgagtttg 215 ||||||||||||||| || || ||||| |||||||| || || | || |||||||||||| Sbjct: 2056 ttattttttctcttcgccttcagaatccgactctgcaaatacaggtttcggctgagtttg 1997 Query: 216 agcatatgctggcgcaataaactttgggtcattctttgcagcatccgcatatttcaaaat 275 | ||||||||| ||||| |||||||| || |||| ||||||||| ||||| |||||||| Sbjct: 1996 ggaatatgctggtgcaatgaactttggatctttctctgcagcatctgcatacttcaaaat 1937 Query: 276 tgcttctcttggatcttcatccatccatgtctccttaattaaaccaccctccttcatgag 335 ||| ||||||||||| || |||||||||||||||||||| |||||||||||||||| ||| Sbjct: 1936 tgcctctcttggatcctcgtccatccatgtctccttaatcaaaccaccctccttcaagag 1877 Query: 336 atactgtgtcagcaagctgccttttgtcgtgccaattttaccaccaaaccctggaccact 395 |||||||||| ||||||||||||||| || || | | | |||||||| || |||||| | Sbjct: 1876 gtactgtgtcaacaagctgccttttgtagtaccgactcttccaccaaagccaggaccatt 1817 Query: 396 aacaggtgcttctggtttgtgtgatttgagggggtctttcatcatcttctctctttggcg 455 || || ||||| ||||| ||||||||||| |||||||||| ||||||||||||||||| Sbjct: 1816 gactggagcttcaggtttatgtgatttgagcgggtctttcagtatcttctctctttggcg 1757 Query: 456 tttacggcttggttgatctctgaatagaggcagtgcatgtggattgtgtattaaaggttg 515 ||| || |||||||||||||| ||||| ||||||||||||||||| ||||||| |||||| Sbjct: 1756 tttccgacttggttgatctctaaatagtggcagtgcatgtggattatgtattacaggttg 1697 Query: 516 cacctcataatcatcaacagattgtttccttggtgctcgtccaacacacacaagagctcc 575 ||||||| |||| |||||||||| |||||| ||||||||||||||||| ||||| ||||| Sbjct: 1696 cacctcaaaatcgtcaacagattttttcctaggtgctcgtccaacacatacaagtgctcc 1637 Query: 576 cctctgactaacagaaggatcgtacaagatatgagtcccaccttccttcttgtccccaac 635 |||||||||| ||||||||| || ||||||||||| |||||||||||||| |||||||| Sbjct: 1636 tctctgactaatagaaggatcatataagatatgagtaccaccttccttcttatccccaac 1577 Query: 636 tgttgcgaacacctgattaatccttggatgccagagcgaccttatcac 683 ||||||||| || |||||||||||||||||||| || |||||||||| Sbjct: 1576 tgttgcgaatacttgattaatccttggatgccatagacaccttatcac 1529
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 337 bits (170), Expect = 3e-89 Identities = 287/326 (88%) Strand = Plus / Minus Query: 326 ccttcatgagatactgtgtcagcaagctgccttttgtcgtgccaattttaccaccaaacc 385 |||||| ||| |||||||||| ||||||||||||||| || || | | | |||||||| | Sbjct: 52778 ccttcaagaggtactgtgtcaacaagctgccttttgtagtaccgactcttccaccaaagc 52719 Query: 386 ctggaccactaacaggtgcttctggtttgtgtgatttgagggggtctttcatcatcttct 445 | |||||| | || || ||||| ||||| ||||||||||| |||||||||| ||||||| Sbjct: 52718 caggaccattgactggagcttcaggtttatgtgatttgagcgggtctttcagtatcttct 52659 Query: 446 ctctttggcgtttacggcttggttgatctctgaatagaggcagtgcatgtggattgtgta 505 ||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| |||| Sbjct: 52658 ctctttggcgtttccgacttggttgatctctaaatagtggcagtgcatgtggattatgta 52599 Query: 506 ttaaaggttgcacctcataatcatcaacagattgtttccttggtgctcgtccaacacaca 565 ||| ||||||||||||| |||| |||||||||| |||||| ||||||||||||||||| | Sbjct: 52598 ttacaggttgcacctcaaaatcgtcaacagattttttcctaggtgctcgtccaacacata 52539 Query: 566 caagagctcccctctgactaacagaaggatcgtacaagatatgagtcccaccttccttct 625 |||| ||||| |||||||||| ||||||||| || ||||||||||| ||||||||||||| Sbjct: 52538 caagtgctcctctctgactaatagaaggatcatataagatatgagtaccaccttccttct 52479 Query: 626 tgtccccaactgttgcgaacacctga 651 | ||||||||||||||||| |||||| Sbjct: 52478 tatccccaactgttgcgaatacctga 52453 Score = 168 bits (85), Expect = 2e-38 Identities = 151/173 (87%) Strand = Plus / Minus Query: 156 ttattttttctcttcaccgtcggaatcagactctgcgaagactgtttccggctgagtttg 215 ||||||||||||||| || || ||||| |||||||| || || | || |||||||||||| Sbjct: 53090 ttattttttctcttcgccttcagaatccgactctgcaaatacaggtttcggctgagtttg 53031 Query: 216 agcatatgctggcgcaataaactttgggtcattctttgcagcatccgcatatttcaaaat 275 | ||||||||| ||||| |||||||| || |||| ||||||||| ||||| |||||||| Sbjct: 53030 ggaatatgctggtgcaatgaactttggatctttctctgcagcatctgcatacttcaaaat 52971 Query: 276 tgcttctcttggatcttcatccatccatgtctccttaattaaaccaccctcct 328 ||| ||||||||||| || |||||||||||||||||||| ||||||||||||| Sbjct: 52970 tgcctctcttggatcctcgtccatccatgtctccttaatcaaaccaccctcct 52918 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 649 tgattaatccttggatgccagagcgaccttatcac 683 |||||||||||||||||||| || |||||||||| Sbjct: 52371 tgattaatccttggatgccatagacaccttatcac 52337
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 337 bits (170), Expect = 3e-89 Identities = 287/326 (88%) Strand = Plus / Plus Query: 326 ccttcatgagatactgtgtcagcaagctgccttttgtcgtgccaattttaccaccaaacc 385 |||||| ||| |||||||||| ||||||||||||||| || || | | | |||||||| | Sbjct: 16607464 ccttcaagaggtactgtgtcaacaagctgccttttgtagtaccgactcttccaccaaagc 16607523 Query: 386 ctggaccactaacaggtgcttctggtttgtgtgatttgagggggtctttcatcatcttct 445 | |||||| | || || ||||| ||||| ||||||||||| |||||||||| ||||||| Sbjct: 16607524 caggaccattgactggagcttcaggtttatgtgatttgagcgggtctttcagtatcttct 16607583 Query: 446 ctctttggcgtttacggcttggttgatctctgaatagaggcagtgcatgtggattgtgta 505 ||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| |||| Sbjct: 16607584 ctctttggcgtttccgacttggttgatctctaaatagtggcagtgcatgtggattatgta 16607643 Query: 506 ttaaaggttgcacctcataatcatcaacagattgtttccttggtgctcgtccaacacaca 565 ||| ||||||||||||| |||| |||||||||| |||||| ||||||||||||||||| | Sbjct: 16607644 ttacaggttgcacctcaaaatcgtcaacagattttttcctaggtgctcgtccaacacata 16607703 Query: 566 caagagctcccctctgactaacagaaggatcgtacaagatatgagtcccaccttccttct 625 |||| ||||| |||||||||| ||||||||| || ||||||||||| ||||||||||||| Sbjct: 16607704 caagtgctcctctctgactaatagaaggatcatataagatatgagtaccaccttccttct 16607763 Query: 626 tgtccccaactgttgcgaacacctga 651 | ||||||||||||||||| |||||| Sbjct: 16607764 tatccccaactgttgcgaatacctga 16607789 Score = 168 bits (85), Expect = 2e-38 Identities = 151/173 (87%) Strand = Plus / Plus Query: 156 ttattttttctcttcaccgtcggaatcagactctgcgaagactgtttccggctgagtttg 215 ||||||||||||||| || || ||||| |||||||| || || | || |||||||||||| Sbjct: 16607152 ttattttttctcttcgccttcagaatccgactctgcaaatacaggtttcggctgagtttg 16607211 Query: 216 agcatatgctggcgcaataaactttgggtcattctttgcagcatccgcatatttcaaaat 275 | ||||||||| ||||| |||||||| || |||| ||||||||| ||||| |||||||| Sbjct: 16607212 ggaatatgctggtgcaatgaactttggatctttctctgcagcatctgcatacttcaaaat 16607271 Query: 276 tgcttctcttggatcttcatccatccatgtctccttaattaaaccaccctcct 328 ||| ||||||||||| || |||||||||||||||||||| ||||||||||||| Sbjct: 16607272 tgcctctcttggatcctcgtccatccatgtctccttaatcaaaccaccctcct 16607324 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 649 tgattaatccttggatgccagagcgaccttatcac 683 |||||||||||||||||||| || |||||||||| Sbjct: 16607871 tgattaatccttggatgccatagacaccttatcac 16607905
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 337 bits (170), Expect = 3e-89 Identities = 287/326 (88%) Strand = Plus / Plus Query: 326 ccttcatgagatactgtgtcagcaagctgccttttgtcgtgccaattttaccaccaaacc 385 |||||| ||| |||||||||| ||||||||||||||| || || | | | |||||||| | Sbjct: 16615705 ccttcaagaggtactgtgtcaacaagctgccttttgtagtaccgactcttccaccaaagc 16615764 Query: 386 ctggaccactaacaggtgcttctggtttgtgtgatttgagggggtctttcatcatcttct 445 | |||||| | || || ||||| ||||| ||||||||||| |||||||||| ||||||| Sbjct: 16615765 caggaccattgactggagcttcaggtttatgtgatttgagcgggtctttcagtatcttct 16615824 Query: 446 ctctttggcgtttacggcttggttgatctctgaatagaggcagtgcatgtggattgtgta 505 ||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| |||| Sbjct: 16615825 ctctttggcgtttccgacttggttgatctctaaatagtggcagtgcatgtggattatgta 16615884 Query: 506 ttaaaggttgcacctcataatcatcaacagattgtttccttggtgctcgtccaacacaca 565 ||| ||||||||||||| |||| |||||||||| |||||| ||||||||||||||||| | Sbjct: 16615885 ttacaggttgcacctcaaaatcgtcaacagattttttcctaggtgctcgtccaacacata 16615944 Query: 566 caagagctcccctctgactaacagaaggatcgtacaagatatgagtcccaccttccttct 625 |||| ||||| |||||||||| ||||||||| || ||||||||||| ||||||||||||| Sbjct: 16615945 caagtgctcctctctgactaatagaaggatcatataagatatgagtaccaccttccttct 16616004 Query: 626 tgtccccaactgttgcgaacacctga 651 | ||||||||||||||||| |||||| Sbjct: 16616005 tatccccaactgttgcgaatacctga 16616030 Score = 168 bits (85), Expect = 2e-38 Identities = 151/173 (87%) Strand = Plus / Plus Query: 156 ttattttttctcttcaccgtcggaatcagactctgcgaagactgtttccggctgagtttg 215 ||||||||||||||| || || ||||| |||||||| || || | || |||||||||||| Sbjct: 16615393 ttattttttctcttcgccttcagaatccgactctgcaaatacaggtttcggctgagtttg 16615452 Query: 216 agcatatgctggcgcaataaactttgggtcattctttgcagcatccgcatatttcaaaat 275 | ||||||||| ||||| |||||||| || |||| ||||||||| ||||| |||||||| Sbjct: 16615453 ggaatatgctggtgcaatgaactttggatctttctctgcagcatctgcatacttcaaaat 16615512 Query: 276 tgcttctcttggatcttcatccatccatgtctccttaattaaaccaccctcct 328 ||| ||||||||||| || |||||||||||||||||||| ||||||||||||| Sbjct: 16615513 tgcctctcttggatcctcgtccatccatgtctccttaatcaaaccaccctcct 16615565 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 649 tgattaatccttggatgccagagcgaccttatcac 683 |||||||||||||||||||| || |||||||||| Sbjct: 16616112 tgattaatccttggatgccatagacaccttatcac 16616146
>gb|AC146819.19| Medicago truncatula clone mth2-176k6, complete sequence Length = 127131 Score = 85.7 bits (43), Expect = 2e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 208 tgagtttgagcatatgctggcgcaataaactttgggtcattctttgcagcatccgcatat 267 ||||||| |||||||||||| || || |||||||| || || |||| |||| |||||| Sbjct: 100830 tgagtttcagcatatgctggagctatgaactttggttcctttgctgcaacatcagcatat 100889 Query: 268 ttcaaaattgcttctcttggatcttcatccatccatgtctccttaat 314 || | || ||||| |||||||||||||||||||||||||||||||| Sbjct: 100890 tttaggatagcttcccttggatcttcatccatccatgtctccttaat 100936 Score = 73.8 bits (37), Expect = 7e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 464 ttggttgatctctgaatagaggcagtgcatgtggattgtgtattaaaggttgcacctcat 523 |||| |||||||| |||||||| | ||||| ||||||||||||| ||| | | || Sbjct: 101183 ttggctgatctctaaatagaggtaaagcatgaggattgtgtattacaggatttgctacaa 101242 Query: 524 aatcatcaacagattgtttccttggtgctcgtccaacacacacaagagctcccctct 580 |||||||||| |||| |||||||||||| ||| ||||||| ||||||||||| |||| Sbjct: 101243 aatcatcaactgattttttccttggtgcacgtgcaacacaaacaagagctcctctct 101299
>ref|NM_127592.2| Arabidopsis thaliana nucleotide binding AT2G20330 mRNA, complete cds Length = 2156 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 265 tatttcaaaattgcttctcttggatcttcatccatccatgtctc 308 |||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 1925 tatttcaatattgcttctcttggatcttcttccatccacgtctc 1882 Score = 46.1 bits (23), Expect = 0.15 Identities = 56/67 (83%) Strand = Plus / Minus Query: 442 ttctctctttggcgtttacggcttggttgatctctgaatagaggcagtgcatgtggattg 501 |||||||||| ||||||||||||||| |||||||| | || | |||||| |||||| Sbjct: 1748 ttctctctttctcgtttacggcttggtgcgtctctgaacaatggtaatgcatgaggattg 1689 Query: 502 tgtatta 508 ||||||| Sbjct: 1688 tgtatta 1682
>gb|AY133596.1| Arabidopsis thaliana At2g20330/F11A3.12 mRNA, complete cds Length = 1947 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 265 tatttcaaaattgcttctcttggatcttcatccatccatgtctc 308 |||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 1829 tatttcaatattgcttctcttggatcttcttccatccacgtctc 1786 Score = 46.1 bits (23), Expect = 0.15 Identities = 56/67 (83%) Strand = Plus / Minus Query: 442 ttctctctttggcgtttacggcttggttgatctctgaatagaggcagtgcatgtggattg 501 |||||||||| ||||||||||||||| |||||||| | || | |||||| |||||| Sbjct: 1652 ttctctctttctcgtttacggcttggtgcgtctctgaacaatggtaatgcatgaggattg 1593 Query: 502 tgtatta 508 ||||||| Sbjct: 1592 tgtatta 1586
>gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence Length = 93868 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 265 tatttcaaaattgcttctcttggatcttcatccatccatgtctc 308 |||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 38757 tatttcaatattgcttctcttggatcttcttccatccacgtctc 38714 Score = 46.1 bits (23), Expect = 0.15 Identities = 56/67 (83%) Strand = Plus / Minus Query: 442 ttctctctttggcgtttacggcttggttgatctctgaatagaggcagtgcatgtggattg 501 |||||||||| ||||||||||||||| |||||||| | || | |||||| |||||| Sbjct: 38493 ttctctctttctcgtttacggcttggtgcgtctctgaacaatggtaatgcatgaggattg 38434 Query: 502 tgtatta 508 ||||||| Sbjct: 38433 tgtatta 38427
>gb|AF367346.1| Arabidopsis thaliana At2g20330/F11A3.12 mRNA, complete cds Length = 2150 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 265 tatttcaaaattgcttctcttggatcttcatccatccatgtctc 308 |||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 1919 tatttcaatattgcttctcttggatcttcttccatccacgtctc 1876 Score = 46.1 bits (23), Expect = 0.15 Identities = 56/67 (83%) Strand = Plus / Minus Query: 442 ttctctctttggcgtttacggcttggttgatctctgaatagaggcagtgcatgtggattg 501 |||||||||| ||||||||||||||| |||||||| | || | |||||| |||||| Sbjct: 1742 ttctctctttctcgtttacggcttggtgcgtctctgaacaatggtaatgcatgaggattg 1683 Query: 502 tgtatta 508 ||||||| Sbjct: 1682 tgtatta 1676
>gb|AF428322.1|AF428322 Arabidopsis thaliana At2g20330/F11A3.12 mRNA, complete cds Length = 2054 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 265 tatttcaaaattgcttctcttggatcttcatccatccatgtctc 308 |||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 1837 tatttcaatattgcttctcttggatcttcttccatccacgtctc 1794 Score = 46.1 bits (23), Expect = 0.15 Identities = 56/67 (83%) Strand = Plus / Minus Query: 442 ttctctctttggcgtttacggcttggttgatctctgaatagaggcagtgcatgtggattg 501 |||||||||| ||||||||||||||| |||||||| | || | |||||| |||||| Sbjct: 1660 ttctctctttctcgtttacggcttggtgcgtctctgaacaatggtaatgcatgaggattg 1601 Query: 502 tgtatta 508 ||||||| Sbjct: 1600 tgtatta 1594
>gb|AC093924.3| Genomic sequence for Mus musculus, clone RP23-239M9, from chromosome 17, complete sequence Length = 166277 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 613 ccaccttccttcttgtccccaac 635 ||||||||||||||||||||||| Sbjct: 95185 ccaccttccttcttgtccccaac 95207
>gb|AC173485.1| Mus musculus BAC clone RP23-59N18 from chromosome 17, complete sequence Length = 199992 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 613 ccaccttccttcttgtccccaac 635 ||||||||||||||||||||||| Sbjct: 10265 ccaccttccttcttgtccccaac 10287
>gb|AC126013.12| Medicago truncatula clone mth2-32e10, complete sequence Length = 116778 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 150 cacatgttattttttctcttca 171 |||||||||||||||||||||| Sbjct: 79265 cacatgttattttttctcttca 79286
>emb|AL590714.27| Human DNA sequence from clone RP11-297K8 on chromosome 1 Contains a novel gene, the gene for a novel protein (HSPC155), the USP21 gene for ubiquitin specific protease 21, the PPOX gene for protoporphyrinogen oxidase, the B4GALT3 gene for UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase polypeptide 3, the ADAMTS4 gene for a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif 4, the NDUFS2 gene for NADH dehydrogenase (ubiquinone) Fe-S protein 2 (49kDa (NADH-coenzyme Q reductase)), the FCER1G gene for Fc fragment of IgE high affinity I receptor for gamma polypeptide, the APOA2 gene for apolipoprotein A-II, the gene for a novel protein (FLJ12770), the NR1I3 gene for nuclear receptor subfamily 1 group I member 3 and the 5' end of a novel gene, complete sequence Length = 133512 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 551 ctcgtccaacacacacaagagctccc 576 |||||| ||||||||||||||||||| Sbjct: 66016 ctcgtctaacacacacaagagctccc 65991
>gb|AC130811.22| Medicago truncatula clone mth2-26b4, complete sequence Length = 139970 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 150 cacatgttattttttctcttca 171 |||||||||||||||||||||| Sbjct: 103257 cacatgttattttttctcttca 103236
>gb|AC132606.3| Mus musculus BAC clone RP23-434H18 from 8, complete sequence Length = 215743 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 122 actaaaataaaacaaaacagcttaca 147 ||||||||||||||||||| |||||| Sbjct: 199610 actaaaataaaacaaaacaccttaca 199635
>gb|AF125314.2| Mus musculus chromosome X clones MP1-C03180, MP1-C22301, CT7-374D15, proximal part, complete sequence Length = 300285 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ttgtgtcaaatctcattttac 123 ||||||||||||||||||||| Sbjct: 268744 ttgtgtcaaatctcattttac 268724
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 tgtggattgtgtattaaaggttgca 517 |||||||||||||||||| |||||| Sbjct: 3933907 tgtggattgtgtattaaaagttgca 3933883
>gb|AC149683.2| Bos taurus BAC CH240-493H15 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 176832 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 cagtgcatgtggattgtgtat 506 ||||||||||||||||||||| Sbjct: 24 cagtgcatgtggattgtgtat 44
>gb|AC091454.2| Mus musculus chromosome X, clones RP21-438P10, RP21-382F2, RP21-118B24, Map qA7.1, complete sequences Length = 393632 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ttgtgtcaaatctcattttac 123 ||||||||||||||||||||| Sbjct: 59772 ttgtgtcaaatctcattttac 59752
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 tgtggattgtgtattaaaggttgca 517 |||||||||||||||||| |||||| Sbjct: 3951970 tgtggattgtgtattaaaagttgca 3951946
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 tgtggattgtgtattaaaggttgca 517 |||||||||||||||||| |||||| Sbjct: 3952342 tgtggattgtgtattaaaagttgca 3952318
>gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosome 14, complete sequence Length = 217754 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 taaaataaaacaaaacagctt 144 ||||||||||||||||||||| Sbjct: 175485 taaaataaaacaaaacagctt 175465
>gb|AC103982.10| Homo sapiens chromosome 15, clone RP11-343B18, complete sequence Length = 197370 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 ttactaaaataaaacaaaaca 140 ||||||||||||||||||||| Sbjct: 62709 ttactaaaataaaacaaaaca 62729
>emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 in linkage group 13, complete sequence Length = 189908 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccatgtctccttaattaaac 319 ||||||||||||||||||||| Sbjct: 16791 tccatgtctccttaattaaac 16771
>emb|AJ312686.1|HSA312686 Homo sapiens partial LIMD1 gene for LIM domains containing 1, exons 1-2, complete sequence Length = 85000 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 gattgtttccttggtgctcgt 555 ||||||||||||||||||||| Sbjct: 72218 gattgtttccttggtgctcgt 72238
>emb|CR376745.11| Zebrafish DNA sequence from clone CH211-147K10 in linkage group 25, complete sequence Length = 186587 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 tctcattttactaaaataaaa 133 ||||||||||||||||||||| Sbjct: 121106 tctcattttactaaaataaaa 121126
>emb|BX649452.4| Zebrafish DNA sequence from clone DKEY-226L10 in linkage group 24, complete sequence Length = 192113 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccatgtctccttaattaaac 319 ||||||||||||||||||||| Sbjct: 188376 tccatgtctccttaattaaac 188356
>emb|BX248581.17| Zebrafish DNA sequence from clone CH211-208O6 in linkage group 24, complete sequence Length = 202872 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccatgtctccttaattaaac 319 ||||||||||||||||||||| Sbjct: 145562 tccatgtctccttaattaaac 145542
>emb|BX005076.13| Zebrafish DNA sequence from clone DKEY-7N16 in linkage group 25, complete sequence Length = 207084 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccatgtctccttaattaaac 319 ||||||||||||||||||||| Sbjct: 174348 tccatgtctccttaattaaac 174328
>emb|AL929505.14| Zebrafish DNA sequence from clone CH211-120K19 in linkage group 16, complete sequence Length = 178839 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 tccatgtctccttaattaaac 319 ||||||||||||||||||||| Sbjct: 106948 tccatgtctccttaattaaac 106968
>emb|BX005458.19| Zebrafish DNA sequence from clone CH211-173L10 in linkage group 18, complete sequence Length = 140289 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 tactaaaataaaacaaaacag 141 ||||||||||||||||||||| Sbjct: 117190 tactaaaataaaacaaaacag 117210
>emb|BX470217.15| Zebrafish DNA sequence from clone CH211-231P4 in linkage group 20, complete sequence Length = 119560 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 taaaataaaacaaaacagctt 144 ||||||||||||||||||||| Sbjct: 59134 taaaataaaacaaaacagctt 59154
>emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chromosome 2, complete sequence Length = 208765 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 actctgtcagaaaacagaaca 99 ||||||||||||||||||||| Sbjct: 80054 actctgtcagaaaacagaaca 80034
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 tgtggattgtgtattaaaggttgca 517 |||||||||||||||||| |||||| Sbjct: 3951843 tgtggattgtgtattaaaagttgca 3951819
>emb|AL732551.8| Mouse DNA sequence from clone RP23-277K1 on chromosome 4, complete sequence Length = 127241 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 aactttgggtcattctttgca 255 ||||||||||||||||||||| Sbjct: 5912 aactttgggtcattctttgca 5932
>emb|AL772294.6| Mouse DNA sequence from clone RP23-125F4 on chromosome X, complete sequence Length = 144678 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ttgtgtcaaatctcattttac 123 ||||||||||||||||||||| Sbjct: 137059 ttgtgtcaaatctcattttac 137039
>gb|AC166170.4| Mus musculus BAC clone RP23-174N23 from chromosome 6, complete sequence Length = 216743 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 attttactaaaataaaacaaaaca 140 |||||||||||| ||||||||||| Sbjct: 175808 attttactaaaacaaaacaaaaca 175785
>gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome 12, complete sequence Length = 183707 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 caccttccttcttgtcccca 633 |||||||||||||||||||| Sbjct: 38978 caccttccttcttgtcccca 38959
>gb|AC102285.7| Mus musculus chromosome 19, clone RP24-329P13, complete sequence Length = 174894 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 attttactaaaataaaacaaaaca 140 |||||| ||||||||||||||||| Sbjct: 105608 attttattaaaataaaacaaaaca 105631
>gb|BC072773.1| Xenopus laevis Xpat protein, mRNA (cDNA clone MGC:79925 IMAGE:5155227), complete cds Length = 4075 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 gtgcatgtggattgtgtatt 507 |||||||||||||||||||| Sbjct: 1541 gtgcatgtggattgtgtatt 1522
>gb|AC146390.4| Pan troglodytes BAC clone RP43-145D14 from 7, complete sequence Length = 116302 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tttactaaaataaaacaaaa 138 |||||||||||||||||||| Sbjct: 78653 tttactaaaataaaacaaaa 78634
>gb|AC134243.3| Mus musculus BAC clone RP24-90E15 from chromosome 17, complete sequence Length = 193151 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tttactaaaataaaacaaaa 138 |||||||||||||||||||| Sbjct: 110694 tttactaaaataaaacaaaa 110675
>gb|AC147921.2| Xenopus tropicalis clone CH216-95N3, complete sequence Length = 133860 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 attttactaaaataaaacaa 136 |||||||||||||||||||| Sbjct: 17994 attttactaaaataaaacaa 17975
>ref|XM_980713.1| PREDICTED: Mus musculus erythrocyte protein band 4.1-like 4b (Epb4.1l4b), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tttcatcatcttctctcttt 451 |||||||||||||||||||| Sbjct: 3307 tttcatcatcttctctcttt 3288
>ref|XM_987670.1| PREDICTED: Mus musculus erythrocyte protein band 4.1-like 4b (Epb4.1l4b), mRNA Length = 3510 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tttcatcatcttctctcttt 451 |||||||||||||||||||| Sbjct: 3358 tttcatcatcttctctcttt 3339
>ref|XM_980440.1| PREDICTED: Mus musculus erythrocyte protein band 4.1-like 4b (Epb4.1l4b), mRNA Length = 2643 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tttcatcatcttctctcttt 451 |||||||||||||||||||| Sbjct: 2491 tttcatcatcttctctcttt 2472
>gb|AC130218.4| Mus musculus BAC clone RP23-121N18 from chromosome 18, complete sequence Length = 213673 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 ctccttcatgagatactgtgtcag 347 ||||||||||||||||||| |||| Sbjct: 155494 ctccttcatgagatactgtctcag 155517
>emb|BX511096.7| Zebrafish DNA sequence from clone CH211-241F5 in linkage group 3, complete sequence Length = 144398 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 agaaaacagaacattcttgt 106 |||||||||||||||||||| Sbjct: 137201 agaaaacagaacattcttgt 137182
>emb|CR762443.6| Zebrafish DNA sequence from clone DKEY-3A5 in linkage group 10, complete sequence Length = 213185 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ctatagtttctcctcagtaa 23 |||||||||||||||||||| Sbjct: 81496 ctatagtttctcctcagtaa 81515
>emb|AJ002384.2|XLXPAT Xenopus laevis mRNA for Xpat protein Length = 3995 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 gtgcatgtggattgtgtatt 507 |||||||||||||||||||| Sbjct: 1534 gtgcatgtggattgtgtatt 1515
>gb|AC130718.3| Mus musculus BAC clone RP23-467A8 from chromosome 18, complete sequence Length = 178023 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 ctccttcatgagatactgtgtcag 347 ||||||||||||||||||| |||| Sbjct: 4206 ctccttcatgagatactgtctcag 4229
>gb|AC135238.4| Mus musculus BAC clone RP23-314I1 from chromosome 3, complete sequence Length = 247498 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 attttactaaaataaaacaaaaca 140 |||||||||||| ||||||||||| Sbjct: 22439 attttactaaaacaaaacaaaaca 22462
>gb|AC010799.15| Homo sapiens chromosome 15, clone RP11-40J8, complete sequence Length = 179508 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 616 ccttccttcttgtccccaac 635 |||||||||||||||||||| Sbjct: 129398 ccttccttcttgtccccaac 129417
>gb|AC131659.2| Mus musculus BAC clone RP23-241H7 from 3, complete sequence Length = 171521 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 attttactaaaataaaacaaaaca 140 |||||||||||| ||||||||||| Sbjct: 56510 attttactaaaacaaaacaaaaca 56487
>gb|AC124194.3| Mus musculus BAC clone RP23-277L21 from 2, complete sequence Length = 181676 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 113 tctcattttactaaaataaaacaaaaca 140 |||| |||||||||||||||||| |||| Sbjct: 143404 tctctttttactaaaataaaacagaaca 143377
>gb|AC005027.3| Homo sapiens BAC clone GS1-512I21 from 7, complete sequence Length = 157073 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tttactaaaataaaacaaaa 138 |||||||||||||||||||| Sbjct: 101762 tttactaaaataaaacaaaa 101743
>gb|AC007490.7| Homo sapiens chromosome 16 clone RP11-132F7, complete sequence Length = 169207 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 ctttgggtcattctttgcagcatc 260 |||||||||||||||| ||||||| Sbjct: 39899 ctttgggtcattcttttcagcatc 39876
>gb|AC091660.2| Bos taurus clone RP42-354B6, complete sequence Length = 173068 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 cattttactaaaataaaacaaaac 139 |||||||||| ||||||||||||| Sbjct: 62311 cattttactacaataaaacaaaac 62288
>gb|AC107789.7| Mus musculus chromosome 1, clone RP23-409K18, complete sequence Length = 242347 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 catatttcaaaattgcttct 282 |||||||||||||||||||| Sbjct: 228320 catatttcaaaattgcttct 228339
>gb|AY198133.1| Spiroplasma kunkelii strain CR2-3x partial genome sequence Length = 84712 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tttactaaaataaaacaaaa 138 |||||||||||||||||||| Sbjct: 62766 tttactaaaataaaacaaaa 62747
>ref|NM_139169.3| Homo sapiens TruB pseudouridine (psi) synthase homolog 1 (E. coli) (TRUB1), mRNA Length = 3473 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 catcatcttctctctttggc 454 |||||||||||||||||||| Sbjct: 1094 catcatcttctctctttggc 1075
>emb|BX901893.12| Zebrafish DNA sequence from clone CH211-72G23 in linkage group 1, complete sequence Length = 103132 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ctcattttactaaaataaaa 133 |||||||||||||||||||| Sbjct: 47465 ctcattttactaaaataaaa 47484
>emb|AL513317.11| Human DNA sequence from clone RP11-393P6 on chromosome 9, complete sequence Length = 142368 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 attttactaaaataaaacaa 136 |||||||||||||||||||| Sbjct: 67529 attttactaaaataaaacaa 67510
>emb|AL359714.18| Human DNA sequence from clone RP11-22A15 on chromosome 6 Contains part of the BAI3 gene for brain-specific angiogenesis inhibitor 3, complete sequence Length = 156129 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 tcattttactaaaataaaacaaaa 138 |||| ||||||||||||||||||| Sbjct: 20059 tcatcttactaaaataaaacaaaa 20036
>emb|AL355340.17| Human DNA sequence from clone RP11-383C6 on chromosome 10 Contains the TRUB1 gene for TruB pseudouridine (psi) synthase homolog 1 (E. coli), a novel gene and a CpG island, complete sequence Length = 112442 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 catcatcttctctctttggc 454 |||||||||||||||||||| Sbjct: 61268 catcatcttctctctttggc 61249
>emb|AL353898.10| Human DNA sequence from clone RP4-758J24 on chromosome 1p32.1-33 Contains a novel gene, thecytochrome c oxidase subunit VIIb (COX7B) pseudogene, a C1orf8 gene for chromosome 1 open reading frame 8 and a novel gene (FLJ32112), complete sequence Length = 97375 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 attttactaaaataaaacaaaaca 140 |||||||||||| ||||||||||| Sbjct: 49681 attttactaaaacaaaacaaaaca 49704
>gb|AC104010.21| Homo sapiens chromosome 11, clone RP11-244C20, complete sequence Length = 63480 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 cttcatccatccatgtctcc 309 |||||||||||||||||||| Sbjct: 33812 cttcatccatccatgtctcc 33831
>emb|AL135842.15| Human DNA sequence from clone RP1-91G5 on chromosome 1q21.1-21.3 Contains the 3' end of a novel gene, a novel gene, a high mobility group nucleosomal binding domain 3 (HMGN3) pseudogene, the C1orf10 gene for chromosome 1 open reading frame 10, the SPRL5A for small proline rich-like (epidermal differentiation complex) 5A and the NICE-1 gene for NICE-1 protein, complete sequence Length = 188285 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 ctttcatcatcttctctctttggc 454 ||||||||||| |||||||||||| Sbjct: 76659 ctttcatcatcctctctctttggc 76636
>emb|AL049552.20|HSJ388E23 Human DNA sequence from clone RP3-388E23 on chromosome 6q22.33-24.1 Contains part of the gene for a novel protein, a novel gene and a CpG Island, complete sequence Length = 98828 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 taaaataaaacaaaacagct 143 |||||||||||||||||||| Sbjct: 1943 taaaataaaacaaaacagct 1924
>emb|AL022239.1|HS3E5 Human DNA sequence from clone RP1-3E5 on chromosome 20q12-13.12 Contains part of the PTPRT gene for protein tyrosine phosphatase receptor type T, ESTs, STSs and GSSs, complete sequence Length = 134137 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 atttcaaaattgcttctctt 285 |||||||||||||||||||| Sbjct: 98583 atttcaaaattgcttctctt 98564
>ref|XM_789516.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3158-PA (LOC589886), mRNA Length = 4551 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 653 taatccttggatgccagagc 672 |||||||||||||||||||| Sbjct: 4100 taatccttggatgccagagc 4081
>emb|BX648709.1|HSM808860 Homo sapiens mRNA; cDNA DKFZp686E0474 (from clone DKFZp686E0474) Length = 3391 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 catcatcttctctctttggc 454 |||||||||||||||||||| Sbjct: 1059 catcatcttctctctttggc 1040
>gb|BC030601.2| Homo sapiens TruB pseudouridine (psi) synthase homolog 1 (E. coli), mRNA (cDNA clone MGC:26853 IMAGE:4822413), complete cds Length = 3473 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 catcatcttctctctttggc 454 |||||||||||||||||||| Sbjct: 1094 catcatcttctctctttggc 1075
>emb|BX470183.5| Zebrafish DNA sequence from clone CH211-184M13 in linkage group 9, complete sequence Length = 136116 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 attttactaaaataaaacaaaaca 140 |||||| ||||||||||||||||| Sbjct: 41228 attttattaaaataaaacaaaaca 41251
>dbj|AK125554.1| Homo sapiens cDNA FLJ43566 fis, clone PUAEN2007044, weakly similar to TRNA PSEUDOURIDINE SYNTHASE B (EC 4.2.1.70) Length = 2849 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 catcatcttctctctttggc 454 |||||||||||||||||||| Sbjct: 504 catcatcttctctctttggc 485
>gb|AC142396.25| Medicago truncatula clone mth2-6g9, complete sequence Length = 106058 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 ctttcatcatcttctctctt 450 |||||||||||||||||||| Sbjct: 29201 ctttcatcatcttctctctt 29220
>dbj|AK024085.1| Homo sapiens cDNA FLJ14023 fis, clone HEMBA1003645, weakly similar to TIPD PROTEIN Length = 2922 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 taaaataaaacaaaacagct 143 |||||||||||||||||||| Sbjct: 1620 taaaataaaacaaaacagct 1639
>gb|AC107221.5| Homo sapiens BAC clone RP11-609N18 from 4, complete sequence Length = 115870 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ttttactaaaataaaacaaa 137 |||||||||||||||||||| Sbjct: 90293 ttttactaaaataaaacaaa 90274
>gb|AC093914.3| Homo sapiens BAC clone RP11-779N9 from 4, complete sequence Length = 170536 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tctcattttactaaaataaa 132 |||||||||||||||||||| Sbjct: 59456 tctcattttactaaaataaa 59475
>gb|AC098829.3| Homo sapiens BAC clone RP11-665G4 from 4, complete sequence Length = 176778 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 616 ccttccttcttgtccccaac 635 |||||||||||||||||||| Sbjct: 13556 ccttccttcttgtccccaac 13575
>gb|AF448144.1|AF448144 Homo sapiens TruB pseudouridine synthase-like protein 1 (TRUB1) mRNA, complete cds Length = 1113 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 catcatcttctctctttggc 454 |||||||||||||||||||| Sbjct: 1050 catcatcttctctctttggc 1031
>gb|AC019322.8| Homo sapiens chromosome 15, clone RP11-382B18, complete sequence Length = 175205 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 616 ccttccttcttgtccccaac 635 |||||||||||||||||||| Sbjct: 80366 ccttccttcttgtccccaac 80385
>emb|BX510333.14| Zebrafish DNA sequence from clone DKEYP-82D1 in linkage group 2, complete sequence Length = 198845 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ctcattttactaaaataaaa 133 |||||||||||||||||||| Sbjct: 172074 ctcattttactaaaataaaa 172093
>gb|AF015722.3| Homo sapiens chromosome 21 clone cosmid clone Q30A10 map 21q22.2, complete sequence Length = 41176 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 aaaataaaacaaaacagctt 144 |||||||||||||||||||| Sbjct: 9855 aaaataaaacaaaacagctt 9874
>gb|AF015726.2|AF015726 Homo sapiens chromosome 21 clone cosmid clone Q36D3 map 21q22.2, complete sequence Length = 35621 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 aaaataaaacaaaacagctt 144 |||||||||||||||||||| Sbjct: 32249 aaaataaaacaaaacagctt 32268
>dbj|AK223567.1| Homo sapiens mRNA for TruB pseudouridine (psi) synthase homolog 1 variant, clone: FCC128F07 Length = 1714 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 catcatcttctctctttggc 454 |||||||||||||||||||| Sbjct: 1039 catcatcttctctctttggc 1020
>dbj|BS000197.1| Pan troglodytes chromosome 22 clone:PTB-108M20, map 22, complete sequences Length = 192863 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 aaaataaaacaaaacagctt 144 |||||||||||||||||||| Sbjct: 151466 aaaataaaacaaaacagctt 151485
>emb|BX648479.1|HSM808627 Homo sapiens mRNA; cDNA DKFZp686E0655 (from clone DKFZp686E0655) Length = 3424 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 catcatcttctctctttggc 454 |||||||||||||||||||| Sbjct: 1058 catcatcttctctctttggc 1039
>dbj|AB016872.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21P3 Length = 86001 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tactaaaataaaacaaaaca 140 |||||||||||||||||||| Sbjct: 18496 tactaaaataaaacaaaaca 18515
>gb|AC007501.2|AC007501 Homo sapiens chromosome 16 clone RPCI-11_67I13, complete sequence Length = 162617 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 ctttgggtcattctttgcagcatc 260 |||||||||||||||| ||||||| Sbjct: 91209 ctttgggtcattcttttcagcatc 91186
>emb|AJ229041.1|HS229041 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22; segment 1/3 Length = 323000 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaaataaaacaaaacagctt 144 |||||||||||||||||||| Sbjct: 316832 aaaataaaacaaaacagctt 316813
>emb|AL163268.2|HS21C068 Homo sapiens chromosome 21 segment HS21C068 Length = 340000 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 aaaataaaacaaaacagctt 144 |||||||||||||||||||| Sbjct: 205195 aaaataaaacaaaacagctt 205214
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 tctttcatcatcttctctct 449 |||||||||||||||||||| Sbjct: 163472 tctttcatcatcttctctct 163491
>emb|BX255957.6| Zebrafish DNA sequence from clone CH211-215P14 in linkage group 20, complete sequence Length = 126287 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 tactaaaataaaacaaaaca 140 |||||||||||||||||||| Sbjct: 25731 tactaaaataaaacaaaaca 25712
>emb|BX284688.13| Zebrafish DNA sequence from clone DKEY-71K16 in linkage group 25, complete sequence Length = 236784 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aataaaacaaaacagcttac 146 |||||||||||||||||||| Sbjct: 83006 aataaaacaaaacagcttac 82987
>emb|AL954220.1| Pan troglodytes chromosome 22 clone PTB-091C04 map q21.2, complete sequence Length = 241304 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaaataaaacaaaacagctt 144 |||||||||||||||||||| Sbjct: 176767 aaaataaaacaaaacagctt 176748
>emb|CR352221.10| Zebrafish DNA sequence from clone DKEY-87M9 in linkage group 3, complete sequence Length = 183589 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 agaaaacagaacattcttgt 106 |||||||||||||||||||| Sbjct: 143920 agaaaacagaacattcttgt 143901
>gb|AC120423.13| Mus musculus chromosome 6, clone RP24-495D13, complete sequence Length = 158246 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 attttactaaaataaaacaaaaca 140 |||||||||||| ||||||||||| Sbjct: 71062 attttactaaaacaaaacaaaaca 71039
>emb|AL928935.14| Mouse DNA sequence from clone RP24-114E18 on chromosome 2, complete sequence Length = 123074 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 113 tctcattttactaaaataaaacaaaaca 140 |||| |||||||||||||||||| |||| Sbjct: 41524 tctctttttactaaaataaaacagaaca 41551
>emb|AL163152.4|CNS01RID Human chromosome 14 DNA sequence BAC R-98N22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 159772 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 aaatctcattttactaaaat 129 |||||||||||||||||||| Sbjct: 102953 aaatctcattttactaaaat 102972
>emb|CT009580.9| Mouse DNA sequence from clone RP23-133F14 on chromosome 17, complete sequence Length = 191260 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctaaaataaaacaaaacagc 142 |||||||||||||||||||| Sbjct: 126853 ctaaaataaaacaaaacagc 126872
>gb|AC132607.4| Mus musculus BAC clone RP23-447F22 from 12, complete sequence Length = 194101 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 tcttcatccatccatgtctc 308 |||||||||||||||||||| Sbjct: 145295 tcttcatccatccatgtctc 145314
>gb|AY851478.1| Ciona intestinalis clone BAC XNE, complete sequence Length = 106897 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 tcattttactaaaataaaacaaaa 138 |||| ||||||||||||||||||| Sbjct: 28693 tcatgttactaaaataaaacaaaa 28716
>gb|AC163621.5| Mus musculus BAC clone RP23-122H1 from chromosome 13, complete sequence Length = 194866 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 aacaggtgcttctggtttgtgtga 419 ||||| |||||||||||||||||| Sbjct: 88656 aacagatgcttctggtttgtgtga 88679
>emb|AL592169.14| Mouse DNA sequence from clone RP23-305P10 on chromosome 15, complete sequence Length = 161985 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gtgtcagcaagctgcctttt 360 |||||||||||||||||||| Sbjct: 150419 gtgtcagcaagctgcctttt 150438
>emb|AL831761.9| Mouse DNA sequence from clone RP23-318H16 on chromosome 4, complete sequence Length = 179556 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 tttcatcatcttctctcttt 451 |||||||||||||||||||| Sbjct: 33514 tttcatcatcttctctcttt 33533
>emb|AL845305.5| Mouse DNA sequence from clone RP23-202K13 on chromosome 2, complete sequence Length = 200141 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 attttactaaaataaaacaaaaca 140 |||||| ||||||||||||||||| Sbjct: 127929 attttaataaaataaaacaaaaca 127906
>emb|AL671867.8| Mouse DNA sequence from clone RP23-131J17 on chromosome 4, complete sequence Length = 202342 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 catcaacagattgtttcctt 546 |||||||||||||||||||| Sbjct: 174371 catcaacagattgtttcctt 174390
>gb|AC166098.3| Mus musculus BAC clone RP24-316F13 from chromosome 9, complete sequence Length = 185112 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 tctttcatcatcttctctct 449 |||||||||||||||||||| Sbjct: 77881 tctttcatcatcttctctct 77900
>gb|AC171207.2| Mus musculus BAC clone RP23-339A3 from chromosome 3, complete sequence Length = 190395 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 attttactaaaataaaacaaaaca 140 |||||||||||| ||||||||||| Sbjct: 24348 attttactaaaacaaaacaaaaca 24325 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9,258,999 Number of Sequences: 3902068 Number of extensions: 9258999 Number of successful extensions: 204041 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 203399 Number of HSP's gapped (non-prelim): 636 length of query: 686 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 663 effective length of database: 17,143,297,704 effective search space: 11366006377752 effective search space used: 11366006377752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
