ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9p21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1079_METJA (Q58479) Hypothetical protein MJ1079 32 0.58
2TWF1_XENTR (Q5I082) Twinfilin-1 28 8.3
3TWF1_XENLA (Q68F50) Twinfilin-1 28 8.3

>Y1079_METJA (Q58479) Hypothetical protein MJ1079|
          Length = 397

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -2

Query: 230 AIF-IICSRSIAILELANCQVGVIRFILWSEFIFLSQIFVVLFCGMDAWVGQSLVCVSHG 54
           AIF I+ S +IAI+ L N    ++ FI    F FLS +F ++FC +   +G     + + 
Sbjct: 300 AIFSILISSTIAIIILLNLSKYILLFIRKVNFKFLS-LFFIIFCSLVVIIGSYNTYLIYH 358

Query: 53  FLVDKTVI 30
            +V  T I
Sbjct: 359 IIVYLTAI 366



to top

>TWF1_XENTR (Q5I082) Twinfilin-1|
          Length = 350

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 47  PETHD*HKPNFAQPKHPSHRTTQRKFVKG 133
           P+ H  HK NFA+PK P+ +   R+ ++G
Sbjct: 314 PKQHA-HKQNFAKPKGPAGKRGIRRLIRG 341



to top

>TWF1_XENLA (Q68F50) Twinfilin-1|
          Length = 350

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 47  PETHD*HKPNFAQPKHPSHRTTQRKFVKG 133
           P+ H  HK NFA+PK P+ +   R+ ++G
Sbjct: 314 PKQHA-HKQNFAKPKGPAGKRGIRRLIRG 341


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,196,655
Number of Sequences: 219361
Number of extensions: 701520
Number of successful extensions: 1799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1798
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top