ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9p17 |
|---|---|
| Clone Library Name | barley_pub |
>UBP36_HUMAN (Q9P275) Ubiquitin carboxyl-terminal hydrolase 36 (EC 3.1.2.15)| (Ubiquitin thioesterase 36) (Ubiquitin-specific-processing protease 36) (Deubiquitinating enzyme 36) Length = 1121 Score = 39.3 bits (90), Expect = 0.007 Identities = 14/24 (58%), Positives = 21/24 (87%) Frame = -3 Query: 461 VLDEWDEEYDRGKAKKVRKAKEDE 390 V+D+WDEE+DRGK KK++K K ++ Sbjct: 1066 VVDDWDEEFDRGKEKKIKKFKREK 1089
>MYT1L_HUMAN (Q9UL68) Myelin transcription factor 1-like protein (MyT1L protein)| (MyT1-L) Length = 1186 Score = 32.0 bits (71), Expect = 1.1 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = -3 Query: 455 DEWDEEYDRGKAKKVRKAKEDEDDDGTNPFQAEANHVSARKEKQ 324 DE DEE DR + +++ + ED+D+DG + E +E++ Sbjct: 121 DEEDEEGDREEEEEIEEEDEDDDEDGEDVEDEEEEEEEEEEEEE 164
>SAN1_YEAST (P22470) Protein SAN1| Length = 610 Score = 30.0 bits (66), Expect = 4.1 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = -3 Query: 455 DEWDEEYDRGKAKKVRKAKEDEDDDGT 375 DE+++E D KAK+ R ++ +E+ +GT Sbjct: 170 DEYEDEVDSTKAKRKRDSENEEESEGT 196
>MUTS_ACIAD (Q6FC54) DNA mismatch repair protein mutS| Length = 881 Score = 29.6 bits (65), Expect = 5.4 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -2 Query: 393 RGRRRHEPLPG*GKPRISAKGETKTLEQAGQTTSLGE 283 RG+ EP+P G P +A+G L +AGQT ++ E Sbjct: 61 RGKANGEPIPMAGVPYHAAEGYLARLVRAGQTVAICE 97
>HSP90_PODAN (O43109) Heat shock protein 90 homolog (Suppressor of vegetative| incompatibility MOD-E) Length = 701 Score = 29.6 bits (65), Expect = 5.4 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = -3 Query: 527 DVAVPN--TETIEYRSSGKKSIGYVLDEWDEEYDRGKAKKVRKAKEDEDD 384 +V VP+ ET+E K I V D+ +++ + K KKV++ K +E++ Sbjct: 212 EVEVPDEEAETVEEGDDKKPKIEEVEDDEEDKEKKPKTKKVKEVKTEEEE 261
>HSP3_MURBR (P83213) Sperm protamine P3| Length = 54 Score = 29.3 bits (64), Expect = 7.1 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 435 RPWKGKEGQKSEGRRGRRRHEPLPG*GKPRISAKGE 328 R KGK G+K +G++ RRR G GK + KG+ Sbjct: 5 RRGKGKGGKKKKGKKRRRRGRKGKGKGKKKGKRKGK 40
>CASQ2_RAT (P51868) Calsequestrin-2 precursor (Calsequestrin, cardiac muscle| isoform) Length = 413 Score = 29.3 bits (64), Expect = 7.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 458 LDEWDEEYDRGKAKKVRKAKEDEDDDGTN 372 L++W E+ GK EDEDDDG N Sbjct: 358 LEDWIEDVLSGKINTEDDDNEDEDDDGDN 386
>RS5_BIFLO (P59122) 30S ribosomal protein S5| Length = 233 Score = 29.3 bits (64), Expect = 7.1 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -2 Query: 426 KGKEGQKSEGRRGRRRH 376 KG+ GQ+ EGRRG RR+ Sbjct: 19 KGRRGQRGEGRRGERRN 35
>NOP58_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein NOP5)| Length = 511 Score = 29.3 bits (64), Expect = 7.1 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = -3 Query: 446 DEEYDRGKAKKVRKAKEDEDDDGTNPFQAEANHVSARKEKQ 324 D+E + K KK +K K D+D+D + +A+ +++K+ Sbjct: 445 DDEEEEKKEKKEKKRKRDDDEDSKDSKKAKKEKKDKKEKKE 485
>VCOM_ADE02 (P03267) Minor core protein (Protein V) (pV)| Length = 369 Score = 29.3 bits (64), Expect = 7.1 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = -3 Query: 446 DEEYDRGKAKKVRKAKEDEDDDGTNPFQAEANHVSARKEK 327 +++Y K K+V+K K+D+DDD + + E H +A + + Sbjct: 26 EQDYKPRKLKRVKKKKKDDDDDELDD-EVELLHATAPRRR 64
>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)| Length = 542 Score = 24.3 bits (51), Expect(2) = 8.8 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -2 Query: 432 PWKGKEGQKSEGRRGRRRHEPLP 364 P K + GRRGR R EP P Sbjct: 54 PTGSKPRKPGAGRRGRPREEPSP 76 Score = 23.1 bits (48), Expect(2) = 8.8 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = -1 Query: 343 QRERRNKDLGASRPDHVARRAEETPPQEDSVERKERK 233 +R+ R L A PD EE +ED E E K Sbjct: 99 KRDPRETFLVARAPDAEDEEEEEEEDEEDEEEEAEEK 135
>HSP82_AJECA (P33125) Heat shock protein 82| Length = 679 Score = 28.9 bits (63), Expect = 9.2 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = -3 Query: 518 VPNTETIEYRSSGKKSIGYVLDEWDEEYDRGKAKKVRKAKEDEDDD 381 VP+ + E + G V + ++E D+ KAKK +K KE++ ++ Sbjct: 217 VPDEDAEEVKDEGDDKAPKVEEVDEDEEDKTKAKKTKKIKENKIEE 262
>DNAJ_HALME (Q9HHB8) Chaperone protein dnaJ| Length = 384 Score = 28.9 bits (63), Expect = 9.2 Identities = 18/44 (40%), Positives = 21/44 (47%) Frame = -3 Query: 479 KKSIGYVLDEWDEEYDRGKAKKVRKAKEDEDDDGTNPFQAEANH 348 KK+ Y D DEE K KKV+KAKE DD + H Sbjct: 26 KKAAKYHPDVSDEEDAEEKFKKVQKAKEVLTDDEKRQMYDQLGH 69
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 28.9 bits (63), Expect = 9.2 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 8/53 (15%) Frame = -3 Query: 467 GYVLDEWDEEYDRGKAKKVRKA--------KEDEDDDGTNPFQAEANHVSARK 333 GY EW E D+ KA++ ++ ED++DD AEA RK Sbjct: 151 GYTDAEWKERVDKWKARQEKRGLVTKGEQTNEDKEDDEEEYLDAEARQPLWRK 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,251,956 Number of Sequences: 219361 Number of extensions: 1025850 Number of successful extensions: 4209 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3891 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4170 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
