Clone Information

BLAST Search Result

Clone Name	rbags9p15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ296273.1\|HVU296273 Hordeum vulgare aba7 gene for stress re...	920	0.0
2	emb\|X69817.1\|HVABA7 H.vulgare ABA7 mRNA for ABA-induced protein	920	0.0
3	ref\|XM_517590.1\| PREDICTED: Pan troglodytes similar to FAT gene ...	42	2.0
4	gb\|CP000069.1\| Trypanosoma brucei chromosome 6, complete sequence	42	2.0
5	gb\|AC084397.5\| Trypanosoma brucei chromosome 6 clone RPCI93-1I18...	42	2.0
6	ref\|NM_005245.3\| Homo sapiens FAT tumor suppressor homolog 1 (Dr...	42	2.0
7	gb\|DQ011225.1\| Tetrahymena thermophila Rh-like protein mRNA, com...	42	2.0
8	gb\|AC128700.4\| Mus musculus BAC clone RP24-130A20 from chromosom...	42	2.0
9	emb\|AL049545.6\|HSDJ263J7 Human DNA sequence from clone RP1-263J7...	42	2.0
10	emb\|X87241.1\|HSHFATPRO H.sapiens mRNA for hFat protein	42	2.0
11	emb\|BX251411.1\| Tropheryma whipplei TW08/27, complete genome; se...	42	2.0
12	gb\|AC103988.7\| Homo sapiens chromosome 15, clone RP11-618N24, co...	42	2.0
13	gb\|AC110761.3\| Homo sapiens BAC clone RP11-45C13 from 4, complet...	42	2.0
14	gb\|AC073607.19\| Homo sapiens 12 BAC RP11-462G20 (Roswell Park Ca...	42	2.0
15	dbj\|D00184.1\|STASCAG Staphylococcus aureus gene for staphylocoag...	42	2.0
16	emb\|AJ311974.1\|SAU311974 Staphylococcus aureus partial coa gene ...	42	2.0
17	gb\|AE014184.1\| Tropheryma whipplei str. Twist, complete genome	42	2.0
18	emb\|BX248238.5\| Zebrafish DNA sequence from clone CH211-169J21 i...	42	2.0
19	emb\|BX469885.9\| Zebrafish DNA sequence from clone DKEY-164N2 in ...	42	2.0
20	emb\|CT573055.2\| Medicago truncatula chromosome 5 clone mth2-75o1...	42	2.0
21	gb\|AF488712.1\| Mycoplasma synoviae clone KF6B lipoprotein hemagg...	40	7.9
22	gb\|DQ180962.1\| Erwinia pyrifoliae hrp gene cluster, partial sequ...	40	7.9
23	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	7.9
24	gb\|AC148980.6\| Mus musculus BAC clone RP23-230C16 from chromosom...	40	7.9
25	emb\|CR974429.7\| Mouse DNA sequence from clone RP23-177B9 on chro...	40	7.9
26	ref\|XM_382578.1\| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	7.9
27	gb\|AC110534.11\| Mus musculus chromosome 17, clone RP23-174D11, c...	40	7.9
28	gb\|AC102590.9\| Mus musculus chromosome 12, clone RP23-335D14, co...	40	7.9
29	emb\|AL683858.7\| Human DNA sequence from clone RP13-137P7 on chro...	40	7.9
30	ref\|XM_501986.1\| Yarrowia lipolytica CLIB122, YALI0C18689g predi...	40	7.9
31	emb\|AL161900.8\| Human DNA sequence from clone RP11-479J22 on chr...	40	7.9
32	emb\|AL137185.7\| Human DNA sequence from clone RP1-64L14 on chrom...	40	7.9
33	emb\|AL050333.18\|HSDJ93K22 Human DNA sequence from clone RP1-93K2...	40	7.9
34	gb\|AC099399.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.9
35	emb\|CR749745.16\| Zebrafish DNA sequence from clone DKEY-7O20 in ...	40	7.9
36	emb\|CR388147.13\| Zebrafish DNA sequence from clone DKEYP-72E1 in...	40	7.9
37	gb\|AC164561.2\| Mus musculus BAC clone RP23-187G5 from chromosome...	40	7.9
38	gb\|CP000240.1\| Synechococcus sp. JA-2-3B'a(2-13), complete genome	40	7.9
39	dbj\|AP007162.1\| Aspergillus oryzae RIB40 genomic DNA, SC102	40	7.9
40	dbj\|AB188196.1\| Botryotinia fuckeliana bcg3 gene for G protein a...	40	7.9
41	ref\|XM_631533.1\| Dictyostelium discoideum AX4 hypothetical prote...	40	7.9
42	gb\|AF120501.1\|AF120501 Ancylostoma ceylanicum cysteine proteinas...	40	7.9
43	gb\|AC127352.5\| Mus musculus BAC clone RP23-81P4 from chromosome ...	40	7.9
44	ref\|NM_066767.3\| Caenorhabditis elegans R10E11.5 (R10E11.5) mRNA...	40	7.9
45	gb\|AC011703.8\|AC011703 Drosophila melanogaster, chromosome X, re...	40	7.9
46	gb\|AC011702.10\|AC011702 Drosophila melanogaster, chromosome X, r...	40	7.9
47	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.9
48	gb\|AF195902.1\|AF195902 Lactobacillus johnsonii prophage Lj928 la...	40	7.9
49	gb\|AF339098.1\|AF339098 Ancylostoma ceylanicum cathepsin b-like p...	40	7.9
50	gb\|AC107077.5\| Homo sapiens BAC clone RP11-564L12 from 2, comple...	40	7.9
51	gb\|AC079169.32\| Homo sapiens X BAC RP11-479I1 (Roswell Park Canc...	40	7.9
52	dbj\|BA000016.3\| Clostridium perfringens str. 13 DNA, complete ge...	40	7.9
53	emb\|BX321890.5\| Zebrafish DNA sequence from clone CH211-258D5 in...	40	7.9
54	gb\|AE003506.3\| Drosophila melanogaster chromosome X, section 58 ...	40	7.9
55	dbj\|AP003175.2\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	7.9
56	gb\|L77117.1\| Methanocaldococcus jannaschii DSM 2661, complete ge...	40	7.9
57	emb\|CT033780.10\| Mouse DNA sequence from clone RP24-329E14 on ch...	40	7.9
58	emb\|CR382129.1\| Yarrowia lipolytica chromosome C of strain CLIB1...	40	7.9
59	emb\|AL583884.20\| Mouse DNA sequence from clone RP23-324B16 on ch...	40	7.9
60	dbj\|AB070451.1\| Dictyostelium discoideum cbpH mRNA for calcium b...	40	7.9
61	gb\|L23858.1\|YSJATPASEA Yarrowia lipolytica ATPase (PAY4) gene, c...	40	7.9

>emb|AJ296273.1|HVU296273 Hordeum vulgare aba7 gene for stress responsive protein
          Length = 1841

 Score =  920 bits (464), Expect = 0.0
 Identities = 510/522 (97%), Gaps = 5/522 (0%)
 Strand = Plus / Minus

                                                                        
Query: 64   attcattacaaacacttgacaataacaacaaagtgcagacagttcagacatacacatgtt 123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1841 attcattacaaacacttgacaataacaacaaagtgcagacagttcagacatacacatgtt 1782

                                                                        
Query: 124  gctaacaaaaactcaaccgactatgactcgtacaacgata--tacgctgcaaggagcgca 181
            |||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||
Sbjct: 1781 gctaacaaaaactcaaccgactataactcgtacaacgatcagtacgctgcaaggagcgca 1722

                                                                        
Query: 182  taattttattcattacaatacaatacacacaagtacgaaatgcaaatacgtagctgccag 241
            |||||||||||||||||||||||||||||  ||  ||||||||||||||| |||||||||
Sbjct: 1721 taattttattcattacaatacaatacaca--agatcgaaatgcaaatacg-agctgccag 1665

                                                                        
Query: 242  cagcactaactccagggcttgttgcatttcttcatgaacggaagcaaggattttggcgct 301
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1664 cagcactaactccagggcttgttgcatttgttcatgaacggaagcaaggattttggcgct 1605

                                                                        
Query: 302  ccatcctagccaatgcttcgcgtatctctctgataccttgcatcgcctctcccaggtcgc 361
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1604 ccatcctagccaatgcttcacgtatctctctgataccttgcatcgcctctcccaggtcgc 1545

                                                                        
Query: 362  tccttagacgccggatctctgtgctgagataggacatcctctgatccatgttcctactca 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 tccttagacgccggatctctgtgctgagataggacatcctctgatccatgttcctactca 1485

                                                                        
Query: 422  aatctgccaggattgcaacctgttcatgggtctcatggccttccaattgctcagaaattt 481
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1484 gatctgccaggattgcaacctgttcatgggtctcatggccttccaattgctcagaaattt 1425

                                                                        
Query: 482  cacgaggcagtcgctttatcagctcttttattttttcaacatctttctctactttgattt 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1424 cacgaggcagtcgctttatcagctcttttattttttcaacatctttctctactttgattt 1365

                                                      
Query: 542  gattgatcacctcatcatgatcgctgcctatgtcactgccaa 583
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1364 gattgatcacctcatcatgatcgctgcctatgtcactgccaa 1323



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   cataattttattcattacaa 74
            ||||||||||||||||||||
Sbjct: 1723 cataattttattcattacaa 1704

to top

>emb|X69817.1|HVABA7 H.vulgare ABA7 mRNA for ABA-induced protein
          Length = 841

 Score =  920 bits (464), Expect = 0.0
 Identities = 510/522 (97%), Gaps = 5/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 64  attcattacaaacacttgacaataacaacaaagtgcagacagttcagacatacacatgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 attcattacaaacacttgacaataacaacaaagtgcagacagttcagacatacacatgtt 782

                                                                       
Query: 124 gctaacaaaaactcaaccgactatgactcgtacaacgata--tacgctgcaaggagcgca 181
           |||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||
Sbjct: 781 gctaacaaaaactcaaccgactataactcgtacaacgatcagtacgctgcaaggagcgca 722

                                                                       
Query: 182 taattttattcattacaatacaatacacacaagtacgaaatgcaaatacgtagctgccag 241
           |||||||||||||||||||||||||||||  ||  ||||||||||||||| |||||||||
Sbjct: 721 taattttattcattacaatacaatacaca--agatcgaaatgcaaatacg-agctgccag 665

                                                                       
Query: 242 cagcactaactccagggcttgttgcatttcttcatgaacggaagcaaggattttggcgct 301
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 664 cagcactaactccagggcttgttgcatttgttcatgaacggaagcaaggattttggcgct 605

                                                                       
Query: 302 ccatcctagccaatgcttcgcgtatctctctgataccttgcatcgcctctcccaggtcgc 361
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ccatcctagccaatgcttcacgtatctctctgataccttgcatcgcctctcccaggtcgc 545

                                                                       
Query: 362 tccttagacgccggatctctgtgctgagataggacatcctctgatccatgttcctactca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tccttagacgccggatctctgtgctgagataggacatcctctgatccatgttcctactca 485

                                                                       
Query: 422 aatctgccaggattgcaacctgttcatgggtctcatggccttccaattgctcagaaattt 481
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gatctgccaggattgcaacctgttcatgggtctcatggccttccaattgctcagaaattt 425

                                                                       
Query: 482 cacgaggcagtcgctttatcagctcttttattttttcaacatctttctctactttgattt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cacgaggcagtcgctttatcagctcttttattttttcaacatctttctctactttgattt 365

                                                     
Query: 542 gattgatcacctcatcatgatcgctgcctatgtcactgccaa 583
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gattgatcacctcatcatgatcgctgcctatgtcactgccaa 323



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  cataattttattcattacaa 74
           ||||||||||||||||||||
Sbjct: 723 cataattttattcattacaa 704

to top

>ref|XM_517590.1| PREDICTED: Pan troglodytes similar to FAT gene product (LOC461671),
            mRNA
          Length = 8879

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 97   tgcagacagttcagacatacacatgttgc 125
            ||||||||||||||||||| ||| |||||
Sbjct: 3705 tgcagacagttcagacatagacaagttgc 3733

to top

>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 521     catctttctctactttgatttgattgatc 549
               |||||| || |||||||||||||||||||
Sbjct: 1582675 catcttactttactttgatttgattgatc 1582647

to top

>gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18, complete sequence
          Length = 169543

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 521    catctttctctactttgatttgattgatc 549
              |||||| || |||||||||||||||||||
Sbjct: 133303 catcttactttactttgatttgattgatc 133275

to top

>ref|NM_005245.3| Homo sapiens FAT tumor suppressor homolog 1 (Drosophila) (FAT), mRNA
          Length = 14773

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 97   tgcagacagttcagacatacacatgttgc 125
            ||||||||||||||||||| ||| |||||
Sbjct: 7436 tgcagacagttcagacatagacaagttgc 7464

to top

>gb|DQ011225.1| Tetrahymena thermophila Rh-like protein mRNA, complete cds
          Length = 1712

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 56   ataattttattcattacaaac 76
            |||||||||||||||||||||
Sbjct: 1596 ataattttattcattacaaac 1576

to top

>gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosome 8, complete sequence
          Length = 161757

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 505   tcttttattttttcaacatctttct 529
             |||||||||||||||| ||||||||
Sbjct: 89421 tcttttattttttcaaaatctttct 89397

to top

>emb|AL049545.6|HSDJ263J7 Human DNA sequence from clone RP1-263J7 on chromosome 6q14.3-15
             Contains an 60S Ribosomal Protein L7 (RPL7) pseudogene and
             a RAB1, member RAS oncogene family (RAB1) pseudogene,
             complete sequence
          Length = 104081

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 525   tttctctactttgatttgattgatc 549
             ||||||||||||||| |||||||||
Sbjct: 70787 tttctctactttgatctgattgatc 70811

to top

>emb|X87241.1|HSHFATPRO H.sapiens mRNA for hFat protein
          Length = 14756

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 97   tgcagacagttcagacatacacatgttgc 125
            ||||||||||||||||||| ||| |||||
Sbjct: 7443 tgcagacagttcagacatagacaagttgc 7471

to top

>emb|BX251411.1| Tropheryma whipplei TW08/27, complete genome; segment 2/3
          Length = 299050

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 494    gctttatcagctcttttattttttc 518
              |||| ||||||||||||||||||||
Sbjct: 165908 gcttcatcagctcttttattttttc 165884

to top

>gb|AC103988.7| Homo sapiens chromosome 15, clone RP11-618N24, complete sequence
          Length = 192400

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 193    attacaatacaatacacacaa 213
              |||||||||||||||||||||
Sbjct: 147074 attacaatacaatacacacaa 147094

to top

>gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complete sequence
          Length = 153458

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 97     tgcagacagttcagacatacacatgttgc 125
              ||||||||||||||||||| ||| |||||
Sbjct: 120143 tgcagacagttcagacatagacaagttgc 120115

to top

>gb|AC073607.19| Homo sapiens 12 BAC RP11-462G20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 165085

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 521   catctttctctactttgattt 541
             |||||||||||||||||||||
Sbjct: 16776 catctttctctactttgattt 16796

to top

>dbj|D00184.1|STASCAG Staphylococcus aureus gene for staphylocoagulase, complete cds
          Length = 3042

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 510 tattttttcaacatctttctc 530
           |||||||||||||||||||||
Sbjct: 646 tattttttcaacatctttctc 626

to top

>emb|AJ311974.1|SAU311974 Staphylococcus aureus partial coa gene for coagulase, strain
           NTCT1803
          Length = 1377

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 510 tattttttcaacatctttctc 530
           |||||||||||||||||||||
Sbjct: 411 tattttttcaacatctttctc 391

to top

>gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome
          Length = 927303

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 494    gctttatcagctcttttattttttc 518
              |||| ||||||||||||||||||||
Sbjct: 403455 gcttcatcagctcttttattttttc 403479

to top

>emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 in linkage group 20,
              complete sequence
          Length = 158302

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 195    tacaatacaatacacacaagt 215
              |||||||||||||||||||||
Sbjct: 154150 tacaatacaatacacacaagt 154170

to top

>emb|BX469885.9| Zebrafish DNA sequence from clone DKEY-164N2 in linkage group 19,
            complete sequence
          Length = 87215

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 525  tttctctactttgatttgatt 545
            |||||||||||||||||||||
Sbjct: 2385 tttctctactttgatttgatt 2365

to top

>emb|CT573055.2| Medicago truncatula chromosome 5 clone mth2-75o19, COMPLETE SEQUENCE
          Length = 121343

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 53    cacataattttattcattacaaaca 77
             |||||||||||||||| ||||||||
Sbjct: 66275 cacataattttattcaatacaaaca 66251

to top

>gb|AF488712.1| Mycoplasma synoviae clone KF6B lipoprotein hemagglutinin (vlhA) gene,
            partial cds
          Length = 2199

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 502  agctcttttattttttcaac 521
            ||||||||||||||||||||
Sbjct: 2045 agctcttttattttttcaac 2026

to top

>gb|DQ180962.1| Erwinia pyrifoliae hrp gene cluster, partial sequence; and unknown
             genes
          Length = 28886

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 501   cagctcttttattttttcaacatc 524
             |||||||||||||| |||||||||
Sbjct: 20333 cagctcttttatttcttcaacatc 20310

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 535     ttgatttgattgatcacctcatca 558
               ||||||||||||||||||| ||||
Sbjct: 1933851 ttgatttgattgatcacctgatca 1933874

to top

>gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosome 7, complete sequence
          Length = 192433

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 507   ttttattttttcaacatctttctctact 534
             |||| |||| ||||||||||||||||||
Sbjct: 99545 ttttgttttctcaacatctttctctact 99518

to top

>emb|CR974429.7| Mouse DNA sequence from clone RP23-177B9 on chromosome 12, complete
              sequence
          Length = 212593

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    acatacacatgttgctaaca 130
              ||||||||||||||||||||
Sbjct: 127884 acatacacatgttgctaaca 127903

to top

>ref|XM_382578.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02402.1)
           partial mRNA
          Length = 1194

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 562 tcgctgcctatgtcactgcc 581
           ||||||||||||||||||||
Sbjct: 386 tcgctgcctatgtcactgcc 405

to top

>gb|AC110534.11| Mus musculus chromosome 17, clone RP23-174D11, complete sequence
          Length = 174600

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 507   ttttattttttcaacatctttctctact 534
             |||| |||| ||||||||||||||||||
Sbjct: 96106 ttttgttttctcaacatctttctctact 96079

to top

>gb|AC102590.9| Mus musculus chromosome 12, clone RP23-335D14, complete sequence
          Length = 202328

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    acatacacatgttgctaaca 130
              ||||||||||||||||||||
Sbjct: 191215 acatacacatgttgctaaca 191234

to top

>emb|AL683858.7| Human DNA sequence from clone RP13-137P7 on chromosome X, complete
             sequence
          Length = 39746

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    caaacacttgacaataacaa 91
             ||||||||||||||||||||
Sbjct: 23241 caaacacttgacaataacaa 23222

to top

>ref|XM_501986.1| Yarrowia lipolytica CLIB122, YALI0C18689g predicted mRNA
          Length = 3075

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  acgtagctgccagcagcact 248
            ||||||||||||||||||||
Sbjct: 1726 acgtagctgccagcagcact 1707

to top

>emb|AL161900.8| Human DNA sequence from clone RP11-479J22 on chromosome 13, complete
            sequence
          Length = 31248

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  cacatgttgctaacaaaaac 135
            ||||||||||||||||||||
Sbjct: 1211 cacatgttgctaacaaaaac 1192

to top

>emb|AL137185.7| Human DNA sequence from clone RP1-64L14 on chromosome 6, complete
             sequence
          Length = 41503

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   acatacacatgttgctaacaaaaa 134
             ||||||| ||||||||||||||||
Sbjct: 33292 acatacaaatgttgctaacaaaaa 33315

to top

>emb|AL050333.18|HSDJ93K22 Human DNA sequence from clone RP1-93K22 on chromosome 6q14.1-15.3
             Contains the gene for a novel BTB/POZ domain containing
             protein (KIAA1417) and a CpG island, complete sequence
          Length = 113804

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   ataattttattcattacaat 200
             ||||||||||||||||||||
Sbjct: 56369 ataattttattcattacaat 56388

to top

>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06,
             complete sequence
          Length = 122218

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 535   ttgatttgattgatcacctcatca 558
             ||||||||||||||||||| ||||
Sbjct: 41560 ttgatttgattgatcacctgatca 41537

to top

>emb|CR749745.16| Zebrafish DNA sequence from clone DKEY-7O20 in linkage group 5,
             complete sequence
          Length = 110199

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 504   ctcttttattttttcaacat 523
             ||||||||||||||||||||
Sbjct: 65388 ctcttttattttttcaacat 65369

to top

>emb|CR388147.13| Zebrafish DNA sequence from clone DKEYP-72E1 in linkage group 3,
             complete sequence
          Length = 194517

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 187   ttattcattacaatacaatacaca 210
             ||||||| ||||||||||||||||
Sbjct: 64599 ttattcaatacaatacaatacaca 64622

to top

>gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome 12, complete sequence
          Length = 210186

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    ttacaatacaatacacacaa 213
              ||||||||||||||||||||
Sbjct: 113721 ttacaatacaatacacacaa 113740

to top

>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 263     ttgcatttcttcatgaacggaagcaagg 290
               |||||||||||||||| || ||||||||
Sbjct: 1294644 ttgcatttcttcatgatcgcaagcaagg 1294617

to top

>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 525     tttctctactttgatttgat 544
               ||||||||||||||||||||
Sbjct: 1718869 tttctctactttgatttgat 1718850

to top

>dbj|AB188196.1| Botryotinia fuckeliana bcg3 gene for G protein alpha subunit,
            complete cds
          Length = 5232

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  tttattcattacaatacaat 205
            ||||||||||||||||||||
Sbjct: 4553 tttattcattacaatacaat 4572

to top

>ref|XM_631533.1| Dictyostelium discoideum AX4 hypothetical protein (DDB0191153),
           partial mRNA
          Length = 498

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 509 ttattttttcaacatctttctcta 532
           ||||||||||||||||||| ||||
Sbjct: 46  ttattttttcaacatctttttcta 23

to top

>gb|AF120501.1|AF120501 Ancylostoma ceylanicum cysteine proteinase mRNA, complete cds
          Length = 1100

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 514 ttttcaacatctttctctac 533
           ||||||||||||||||||||
Sbjct: 117 ttttcaacatctttctctac 98

to top

>gb|AC127352.5| Mus musculus BAC clone RP23-81P4 from chromosome 7, complete sequence
          Length = 196031

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 507    ttttattttttcaacatctttctctact 534
              |||| |||| ||||||||||||||||||
Sbjct: 159667 ttttgttttctcaacatctttctctact 159694

to top

>ref|NM_066767.3| Caenorhabditis elegans R10E11.5 (R10E11.5) mRNA, complete cds
          Length = 1706

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 512  ttttttcaacatctttctctactt 535
            |||||||||||||||||| |||||
Sbjct: 1267 ttttttcaacatctttctttactt 1244

to top

>gb|AC011703.8|AC011703 Drosophila melanogaster, chromosome X, region 16A-16B, BAC clone
             BACR35P18, complete sequence
          Length = 163307

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   ttacaatacaatacacacaa 213
             ||||||||||||||||||||
Sbjct: 33603 ttacaatacaatacacacaa 33584

to top

>gb|AC011702.10|AC011702 Drosophila melanogaster, chromosome X, region 15F-16A, BAC clone
             BACR42I14, complete sequence
          Length = 167688

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   ttacaatacaatacacacaa 213
             ||||||||||||||||||||
Sbjct: 47250 ttacaatacaatacacacaa 47231

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 535     ttgatttgattgatcacctcatca 558
               ||||||||||||||||||| ||||
Sbjct: 1933849 ttgatttgattgatcacctgatca 1933872

to top

>gb|AF195902.1|AF195902 Lactobacillus johnsonii prophage Lj928 late gene cluster sequence
          Length = 7120

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 490  agtcgctttatcagctcttttatt 513
            |||||||||||||||| |||||||
Sbjct: 2265 agtcgctttatcagcttttttatt 2242

to top

>gb|AF339098.1|AF339098 Ancylostoma ceylanicum cathepsin b-like precursor protein mRNA,
           partial cds
          Length = 555

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 514 ttttcaacatctttctctac 533
           ||||||||||||||||||||
Sbjct: 113 ttttcaacatctttctctac 94

to top

>gb|AC107077.5| Homo sapiens BAC clone RP11-564L12 from 2, complete sequence
          Length = 124355

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    tacaactttttgcacatcaa 48
             ||||||||||||||||||||
Sbjct: 13572 tacaactttttgcacatcaa 13591

to top

>gb|AC079169.32| Homo sapiens X BAC RP11-479I1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 108893

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   agacagttcagacatacaca 119
             ||||||||||||||||||||
Sbjct: 73142 agacagttcagacatacaca 73161

to top

>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    cttttattttttcaacatct 525
              ||||||||||||||||||||
Sbjct: 696232 cttttattttttcaacatct 696213

to top

>emb|BX321890.5| Zebrafish DNA sequence from clone CH211-258D5 in linkage group 5,
              complete sequence
          Length = 147231

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 504    ctcttttattttttcaacat 523
              ||||||||||||||||||||
Sbjct: 126241 ctcttttattttttcaacat 126260

to top

>gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 of 74 of the complete
             sequence
          Length = 302073

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   ttacaatacaatacacacaa 213
             ||||||||||||||||||||
Sbjct: 68446 ttacaatacaatacacacaa 68427

to top

>dbj|AP003175.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-158C6, complete
             sequence
          Length = 81000

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    taattttattcattacaaac 76
             ||||||||||||||||||||
Sbjct: 67410 taattttattcattacaaac 67391

to top

>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 505    tcttttattttttcaacatctttctcta 532
              |||||||||||||||||| |||| ||||
Sbjct: 113267 tcttttattttttcaacaactttttcta 113294

to top

>emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on chromosome 12, complete
              sequence
          Length = 205515

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    ttacaatacaatacacacaa 213
              ||||||||||||||||||||
Sbjct: 196002 ttacaatacaatacacacaa 196021

to top

>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 229     acgtagctgccagcagcact 248
               ||||||||||||||||||||
Sbjct: 2565734 acgtagctgccagcagcact 2565753

to top

>emb|AL583884.20| Mouse DNA sequence from clone RP23-324B16 on chromosome 15, complete
              sequence
          Length = 202342

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 456    atggccttccaattgctcagaaat 479
              ||||||||||||||| ||||||||
Sbjct: 167217 atggccttccaattggtcagaaat 167240

to top

>dbj|AB070451.1| Dictyostelium discoideum cbpH mRNA for calcium binding protein
           CBP8, complete cds, clone:SSD753
          Length = 655

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 509 ttattttttcaacatctttctcta 532
           ||||||||||||||||||| ||||
Sbjct: 74  ttattttttcaacatctttttcta 51

to top

>gb|L23858.1|YSJATPASEA Yarrowia lipolytica ATPase (PAY4) gene, complete cds
          Length = 4567

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  acgtagctgccagcagcact 248
            ||||||||||||||||||||
Sbjct: 2722 acgtagctgccagcagcact 2703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,170,117
Number of Sequences: 3902068
Number of extensions: 7170117
Number of successful extensions: 147617
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147234
Number of HSP's gapped (non-prelim): 377
length of query: 583
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 560
effective length of database: 17,143,297,704
effective search space: 9600246714240
effective search space used: 9600246714240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result