Clone Information

BLAST Search Result

Clone Name	rbags9p10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_474422.1\| Oryza sativa (japonica cultivar-group), predic...	391	e-105
2	dbj\|AK067506.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	391	e-105
3	dbj\|AK059717.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	391	e-105
4	gb\|AY108407.1\| Zea mays PCO110242 mRNA sequence	317	3e-83
5	gb\|BT017949.1\| Zea mays clone EL01N0522B07.c mRNA sequence	305	1e-79
6	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	186	7e-44
7	emb\|AL732347.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	186	7e-44
8	emb\|AL732343.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	186	7e-44
9	emb\|AL606651.3\|OSJN00092 Oryza sativa genomic DNA, chromosome 4,...	186	7e-44
10	emb\|AL607090.12\| Mouse DNA sequence from clone RP23-273I17 on ch...	46	0.16
11	emb\|AL731718.30\| Mouse DNA sequence from clone RP23-167O21 on ch...	44	0.62
12	gb\|AE010299.1\| Methanosarcina acetivorans str. C2A, complete genome	44	0.62
13	gb\|AC137691.7\| Mus musculus chromosome 13, clone RP23-104G24, co...	42	2.4
14	emb\|AL391728.19\| Human DNA sequence from clone RP11-423A18 on ch...	42	2.4
15	emb\|AL158086.32\| Human DNA sequence from clone RP4-815O16 on chr...	42	2.4
16	emb\|AL035703.21\|HS61A9 Human DNA sequence from clone RP1-61A9 on...	42	2.4
17	emb\|AL939118.1\|SCO939118 Streptomyces coelicolor A3(2) complete ...	42	2.4
18	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.4
19	emb\|AJ512827.1\|XLA512827 Xenopus laevis partial mRNA for putativ...	42	2.4
20	emb\|CR962125.2\| Medicago truncatula chromosome 5 clone mth2-179a...	42	2.4
21	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.4
22	emb\|AL844498.4\|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb...	42	2.4
23	ref\|XM_633336.1\| Dictyostelium discoideum hypothetical protein (...	40	9.6
24	gb\|AC079853.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.6
25	gb\|AC113092.25\| Mus musculus chromosome 6, clone RP23-309N11, co...	40	9.6
26	gb\|AY647312.1\| Natronococcus occultus strain MSU4810 16S ribosom...	40	9.6
27	gb\|AC097175.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.6
28	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	9.6
29	gb\|AC124456.5\| Mus musculus BAC clone RP24-134C11 from chromosom...	40	9.6
30	gb\|AC121877.2\| Mus musculus BAC clone RP24-127G8 from 7, complet...	40	9.6
31	emb\|AL391873.15\| Human DNA sequence from clone RP11-399N11 on ch...	40	9.6
32	emb\|AL109807.16\|HSJ1185K9 Human DNA sequence from clone RP5-1185...	40	9.6
33	dbj\|AK052468.1\| Mus musculus 13 days embryo lung cDNA, RIKEN ful...	40	9.6
34	gb\|AC097279.5\| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genom...	40	9.6
35	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.6
36	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.6
37	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.6
38	dbj\|AP003267.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.6
39	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	9.6
40	dbj\|AP003075.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.6
41	dbj\|AK172935.1\| Mus musculus mRNA for mKIAA0344 protein	40	9.6
42	ref\|XM_319575.2\| Anopheles gambiae str. PEST ENSANGP00000006376 ...	40	9.6
43	dbj\|AK066065.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.6
44	emb\|AL132865.1\|CEY62E10A Caenorhabditis elegans YAC Y62E10A, com...	40	9.6
45	emb\|AL844548.7\| Mouse DNA sequence from clone RP23-263D22 on chr...	40	9.6
46	emb\|AL807823.6\| Mouse DNA sequence from clone RP23-328E6 on chro...	40	9.6
47	gb\|AC164160.5\| Mus musculus BAC clone RP23-343P15 from chromosom...	40	9.6
48	gb\|M15347.1\|HUMTGPL2 Human Pro-tRNA and Thr-tRNA genes	40	9.6

>ref|XM_474422.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1905

 Score =  391 bits (197), Expect = e-105
 Identities = 290/321 (90%)
 Strand = Plus / Minus

                                                                        
Query: 382  tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcccg 441
            ||||| || ||||||||||| || || || || || ||||||||||||||||||||||| 
Sbjct: 1853 tgctctggtgtgtgcttgacatattttccgggtgccttgctgttctcgatgagaggccca 1794

                                                                        
Query: 442  aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 501
            ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 1793 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 1734

                                                                        
Query: 502  gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 561
            ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1733 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 1674

                                                                        
Query: 562  aattgcatattgaaagacctgaatctctctttcacagcagttcttgaagctccactgcta 621
            ||| ||| |||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 1673 aatagcacattgaaagacctgaatctctctttgaccgcagctcttgaagctccactgcta 1614

                                                                        
Query: 622  ttgccaccttcgcttcctgcttgaccactacctcctgatgaagtcaaaccttgacctgag 681
            ||||| || || |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1613 ttgcctccctcacttcctacttgaccactacctcctgatgaagtcaaaccttgaccagag 1554

                                 
Query: 682  aggcattgcaacacctttgac 702
            ||||||||||| |||||||||
Sbjct: 1553 aggcattgcaagacctttgac 1533

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>dbj|AK067506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108D21, full
            insert sequence
          Length = 2478

 Score =  391 bits (197), Expect = e-105
 Identities = 290/321 (90%)
 Strand = Plus / Minus

                                                                        
Query: 382  tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcccg 441
            ||||| || ||||||||||| || || || || || ||||||||||||||||||||||| 
Sbjct: 2080 tgctctggtgtgtgcttgacatattttccgggtgccttgctgttctcgatgagaggccca 2021

                                                                        
Query: 442  aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 501
            ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 2020 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 1961

                                                                        
Query: 502  gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 561
            ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1960 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 1901

                                                                        
Query: 562  aattgcatattgaaagacctgaatctctctttcacagcagttcttgaagctccactgcta 621
            ||| ||| |||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 1900 aatagcacattgaaagacctgaatctctctttgaccgcagctcttgaagctccactgcta 1841

                                                                        
Query: 622  ttgccaccttcgcttcctgcttgaccactacctcctgatgaagtcaaaccttgacctgag 681
            ||||| || || |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1840 ttgcctccctcacttcctacttgaccactacctcctgatgaagtcaaaccttgaccagag 1781

                                 
Query: 682  aggcattgcaacacctttgac 702
            ||||||||||| |||||||||
Sbjct: 1780 aggcattgcaagacctttgac 1760

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>dbj|AK059717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-G05, full
            insert sequence
          Length = 1555

 Score =  391 bits (197), Expect = e-105
 Identities = 290/321 (90%)
 Strand = Plus / Minus

                                                                        
Query: 382  tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcccg 441
            ||||| || ||||||||||| || || || || || ||||||||||||||||||||||| 
Sbjct: 1249 tgctctggtgtgtgcttgacatattttccgggtgccttgctgttctcgatgagaggccca 1190

                                                                        
Query: 442  aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 501
            ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 1189 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 1130

                                                                        
Query: 502  gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 561
            ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1129 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 1070

                                                                        
Query: 562  aattgcatattgaaagacctgaatctctctttcacagcagttcttgaagctccactgcta 621
            ||| ||| |||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 1069 aatagcacattgaaagacctgaatctctctttgaccgcagctcttgaagctccactgcta 1010

                                                                        
Query: 622  ttgccaccttcgcttcctgcttgaccactacctcctgatgaagtcaaaccttgacctgag 681
            ||||| || || |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1009 ttgcctccctcacttcctacttgaccactacctcctgatgaagtcaaaccttgaccagag 950

                                 
Query: 682  aggcattgcaacacctttgac 702
            ||||||||||| |||||||||
Sbjct: 949  aggcattgcaagacctttgac 929

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>gb|AY108407.1| Zea mays PCO110242 mRNA sequence
          Length = 1245

 Score =  317 bits (160), Expect = 3e-83
 Identities = 319/372 (85%)
 Strand = Plus / Minus

                                                                       
Query: 327 ctatcaagaacgttcttgtttcccctcgaataggttgcccaggaacagctcgagctgctc 386
           |||||||| |||||||||||||||||||||||  ||||| || | ||||||||| |||||
Sbjct: 883 ctatcaagcacgttcttgtttcccctcgaataaattgcctagcagcagctcgagttgctc 824

                                                                       
Query: 387 aggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcccgaagcg 446
            || |||||||| ||||| |||||||| |||||||| ||||| ||||||||||| || ||
Sbjct: 823 gggagtgtgcttcacgtatttcccaggtgctttgctattctcaatgagaggcccaaaacg 764

                                                                       
Query: 447 cttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagtgactc 506
            |||  ||| |||| ||| || || ||||| ||||| || || || ||||| ||||||||
Sbjct: 763 ttttatgaatgatcggtaggcaggcaacaggatttcagcgaccgcgagtcttagtgactc 704

                                                                       
Query: 507 tcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttcaaattg 566
            |||| ||| |  |||||||| ||||||||||| ||||| || || |||||||| ||   
Sbjct: 703 gcgcagctcagtgtctggaacggaccagccacattgcttgtggtagatctcttcgaacaa 644

                                                                       
Query: 567 catattgaaagacctgaatctctctttcacagcagttcttgaagctccactgctattgcc 626
           || ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 643 cacattgaaagacctgaatctctccttcacagctgttcttgaagctccactgctattgcc 584

                                                                       
Query: 627 accttcgcttcctgcttgaccactacctcctgatgaagtcaaaccttgacctgagaggca 686
           ||| || |||||| | ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 583 accatcacttcctacatgaccactaccacctgatgaagtcaaaccttgaccagagaggca 524

                       
Query: 687 ttgcaacacctt 698
           ||||||||||||
Sbjct: 523 ttgcaacacctt 512

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>gb|BT017949.1| Zea mays clone EL01N0522B07.c mRNA sequence
          Length = 1300

 Score =  305 bits (154), Expect = 1e-79
 Identities = 310/362 (85%)
 Strand = Plus / Minus

                                                                        
Query: 337  cgttcttgtttcccctcgaataggttgcccaggaacagctcgagctgctcaggcgtgtgc 396
            ||||||||||||||||||||||  ||||| || | ||||||||| ||||| || ||||||
Sbjct: 1082 cgttcttgtttcccctcgaataaattgcctagcagcagctcgagttgctcgggagtgtgc 1023

                                                                        
Query: 397  ttgacgtacttcccaggcgctttgctgttctcgatgagaggcccgaagcgcttttggaaa 456
            || ||||| |||||||| |||||||| ||||| ||||||||||| || || |||  ||| 
Sbjct: 1022 ttcacgtatttcccaggtgctttgctattctcaatgagaggcccaaaacgttttatgaat 963

                                                                        
Query: 457  gatctgtatgcgggtaacagaatttctgcaactgccagtctcagtgactctcgcaactct 516
            |||| ||| || || ||||| ||||| || || || ||||| |||||||| |||| ||| 
Sbjct: 962  gatcggtaggcaggcaacaggatttcagcgaccgcgagtcttagtgactcgcgcagctca 903

                                                                        
Query: 517  gaatctggaacagaccagccacactgcttttgataaatctcttcaaattgcatattgaaa 576
            |  |||||||| ||||||||||| ||||| || || |||||||| ||   || |||||||
Sbjct: 902  gtgtctggaacggaccagccacattgcttgtggtagatctcttcgaacaacacattgaaa 843

                                                                        
Query: 577  gacctgaatctctctttcacagcagttcttgaagctccactgctattgccaccttcgctt 636
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 842  gacctgaatctctccttcacagctgttcttgaagctccactgctattgccaccatcactt 783

                                                                        
Query: 637  cctgcttgaccactacctcctgatgaagtcaaaccttgacctgagaggcattgcaacacc 696
            ||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 782  cctacatgaccactaccacctgatgaagtcaaaccttgaccagagaggcattgcaacacc 723

              
Query: 697  tt 698
            ||
Sbjct: 722  tt 721

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  186 bits (94), Expect = 7e-44
 Identities = 133/146 (91%)
 Strand = Plus / Plus

                                                                            
Query: 442      aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 501
                ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 35058432 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 35058491

                                                                            
Query: 502      gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 561
                ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 35058492 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 35058551

                                          
Query: 562      aattgcatattgaaagacctgaatct 587
                ||| ||| ||||||||||||||||||
Sbjct: 35058552 aatagcacattgaaagacctgaatct 35058577



 Score =  151 bits (76), Expect = 4e-33
 Identities = 103/112 (91%)
 Strand = Plus / Plus

                                                                            
Query: 586      ctctctttcacagcagttcttgaagctccactgctattgccaccttcgcttcctgcttga 645
                |||||||| || |||| |||||||||||||||||||||||| || || |||||| |||||
Sbjct: 35058675 ctctctttgaccgcagctcttgaagctccactgctattgcctccctcacttcctacttga 35058734

                                                                    
Query: 646      ccactacctcctgatgaagtcaaaccttgacctgagaggcattgcaacacct 697
                |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 35058735 ccactacctcctgatgaagtcaaaccttgaccagagaggcattgcaagacct 35058786



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                          
Query: 382      tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcc 439
                ||||| || ||||||||||| || || || || || ||||||||||||||||||||||
Sbjct: 35057577 tgctctggtgtgtgcttgacatattttccgggtgccttgctgttctcgatgagaggcc 35057634

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>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete
             sequence
          Length = 112897

 Score =  186 bits (94), Expect = 7e-44
 Identities = 133/146 (91%)
 Strand = Plus / Plus

                                                                         
Query: 442   aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 501
             ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 13137 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 13196

                                                                         
Query: 502   gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 561
             ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 13197 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 13256

                                       
Query: 562   aattgcatattgaaagacctgaatct 587
             ||| ||| ||||||||||||||||||
Sbjct: 13257 aatagcacattgaaagacctgaatct 13282



 Score =  151 bits (76), Expect = 4e-33
 Identities = 103/112 (91%)
 Strand = Plus / Plus

                                                                         
Query: 586   ctctctttcacagcagttcttgaagctccactgctattgccaccttcgcttcctgcttga 645
             |||||||| || |||| |||||||||||||||||||||||| || || |||||| |||||
Sbjct: 13380 ctctctttgaccgcagctcttgaagctccactgctattgcctccctcacttcctacttga 13439

                                                                 
Query: 646   ccactacctcctgatgaagtcaaaccttgacctgagaggcattgcaacacct 697
             |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 13440 ccactacctcctgatgaagtcaaaccttgaccagagaggcattgcaagacct 13491



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                       
Query: 382   tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcc 439
             ||||| || ||||||||||| || || ||||| || ||||||||||||||||||||||
Sbjct: 12282 tgctctggtgtgtgcttgacatattttccaggtgccttgctgttctcgatgagaggcc 12339

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>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete
             sequence
          Length = 94152

 Score =  186 bits (94), Expect = 7e-44
 Identities = 133/146 (91%)
 Strand = Plus / Plus

                                                                         
Query: 442   aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 501
             ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 90137 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 90196

                                                                         
Query: 502   gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 561
             ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 90197 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 90256

                                       
Query: 562   aattgcatattgaaagacctgaatct 587
             ||| ||| ||||||||||||||||||
Sbjct: 90257 aatagcacattgaaagacctgaatct 90282



 Score =  151 bits (76), Expect = 4e-33
 Identities = 103/112 (91%)
 Strand = Plus / Plus

                                                                         
Query: 586   ctctctttcacagcagttcttgaagctccactgctattgccaccttcgcttcctgcttga 645
             |||||||| || |||| |||||||||||||||||||||||| || || |||||| |||||
Sbjct: 90380 ctctctttgaccgcagctcttgaagctccactgctattgcctccctcacttcctacttga 90439

                                                                 
Query: 646   ccactacctcctgatgaagtcaaaccttgacctgagaggcattgcaacacct 697
             |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 90440 ccactacctcctgatgaagtcaaaccttgaccagagaggcattgcaagacct 90491



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                       
Query: 382   tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcc 439
             ||||| || ||||||||||| || || ||||| || ||||||||||||||||||||||
Sbjct: 89282 tgctctggtgtgtgcttgacatattttccaggtgccttgctgttctcgatgagaggcc 89339

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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
              complete sequence
          Length = 145391

 Score =  186 bits (94), Expect = 7e-44
 Identities = 133/146 (91%)
 Strand = Plus / Plus

                                                                          
Query: 442    aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 501
              ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 117479 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 117538

                                                                          
Query: 502    gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 561
              ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 117539 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 117598

                                        
Query: 562    aattgcatattgaaagacctgaatct 587
              ||| ||| ||||||||||||||||||
Sbjct: 117599 aatagcacattgaaagacctgaatct 117624



 Score =  151 bits (76), Expect = 4e-33
 Identities = 103/112 (91%)
 Strand = Plus / Plus

                                                                          
Query: 586    ctctctttcacagcagttcttgaagctccactgctattgccaccttcgcttcctgcttga 645
              |||||||| || |||| |||||||||||||||||||||||| || || |||||| |||||
Sbjct: 117722 ctctctttgaccgcagctcttgaagctccactgctattgcctccctcacttcctacttga 117781

                                                                  
Query: 646    ccactacctcctgatgaagtcaaaccttgacctgagaggcattgcaacacct 697
              |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 117782 ccactacctcctgatgaagtcaaaccttgaccagagaggcattgcaagacct 117833



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                        
Query: 382    tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcc 439
              ||||| || ||||||||||| || || || || || ||||||||||||||||||||||
Sbjct: 116624 tgctctggtgtgtgcttgacatattttccgggtgccttgctgttctcgatgagaggcc 116681

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>emb|AL607090.12| Mouse DNA sequence from clone RP23-273I17 on chromosome 4, complete
             sequence
          Length = 153056

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 665   tcaaaccttgacctgagaggcat 687
             |||||||||||||||||||||||
Sbjct: 97066 tcaaaccttgacctgagaggcat 97088

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>emb|AL731718.30| Mouse DNA sequence from clone RP23-167O21 on chromosome 4, complete
             sequence
          Length = 133646

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 668   aaccttgacctgagaggcattg 689
             ||||||||||||||||||||||
Sbjct: 56464 aaccttgacctgagaggcattg 56485

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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 576     agacctgaatctctctttcaca 597
               ||||||||||||||||||||||
Sbjct: 3295664 agacctgaatctctctttcaca 3295643

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>gb|AC137691.7| Mus musculus chromosome 13, clone RP23-104G24, complete sequence
          Length = 204418

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 530    accagccacactgcttttgat 550
              |||||||||||||||||||||
Sbjct: 173340 accagccacactgcttttgat 173360

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>emb|AL391728.19| Human DNA sequence from clone RP11-423A18 on chromosome 1 Contains part
             of gene KIAA1365 and the PIN1L gene for protein
             (peptidyl-prolyl cis/trans isomerase) NIMA-interacting
             1-like, complete sequence
          Length = 153750

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 564   ttgcatattgaaagacctgaa 584
             |||||||||||||||||||||
Sbjct: 37344 ttgcatattgaaagacctgaa 37324

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>emb|AL158086.32| Human DNA sequence from clone RP4-815O16 on chromosome 1p35.1-36.13
           Contains the C1QA gene for complement component 1( q
           subcomponent, alpha polypeptide), the C1QG gene for
           complement component 1 (q subcomponent, gamma
           polypeptide), the C1QB gene for complement component 1
           (q subcomponent, beta polypeptide), the 5' end of the
           EPHB2 gene for EphB2 and a CpG island, complete sequence
          Length = 87320

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 277 tacaggaacaccgtcgcaccctcac 301
           |||||||||||| ||||||||||||
Sbjct: 521 tacaggaacaccctcgcaccctcac 545

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>emb|AL035703.21|HS61A9 Human DNA sequence from clone RP1-61A9 on chromosome 1p35.2-36.13
            Contains a novel gene (KIAA0478) and the EPHA8 gene for
            ephrin receptor EphA8 precursor, complete sequence
          Length = 160705

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 277  tacaggaacaccgtcgcaccctcac 301
            |||||||||||| ||||||||||||
Sbjct: 1480 tacaggaacaccctcgcaccctcac 1456

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>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     acgtcgacgctgaactgctgc 60
              |||||||||||||||||||||
Sbjct: 236766 acgtcgacgctgaactgctgc 236746

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 555     ctcttcaaattgcatattgaa 575
               |||||||||||||||||||||
Sbjct: 2986589 ctcttcaaattgcatattgaa 2986609

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>emb|AJ512827.1|XLA512827 Xenopus laevis partial mRNA for putative OFD1 protein
          Length = 1108

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 542 gcttttgataaatctcttcaaattg 566
           ||||| |||||||||||||||||||
Sbjct: 613 gctttggataaatctcttcaaattg 589

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>emb|CR962125.2| Medicago truncatula chromosome 5 clone mth2-179a9, COMPLETE SEQUENCE
          Length = 113972

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    taacaagaatttcagcattcc 105
             |||||||||||||||||||||
Sbjct: 77939 taacaagaatttcagcattcc 77959

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 555     ctcttcaaattgcatattgaa 575
               |||||||||||||||||||||
Sbjct: 2986533 ctcttcaaattgcatattgaa 2986553

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>emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb0059G18 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145661

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 555   ctcttcaaattgcatattgaa 575
             |||||||||||||||||||||
Sbjct: 29513 ctcttcaaattgcatattgaa 29493

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>ref|XM_633336.1| Dictyostelium discoideum hypothetical protein (DDB0186216), partial
            mRNA
          Length = 4923

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  tgataaatctcttcaaattg 566
            ||||||||||||||||||||
Sbjct: 1631 tgataaatctcttcaaattg 1612

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>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBb0004M10, complete sequence
          Length = 152423

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  tccccccaaaagaacaaaaa 127
            ||||||||||||||||||||
Sbjct: 2149 tccccccaaaagaacaaaaa 2168

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>gb|AC113092.25| Mus musculus chromosome 6, clone RP23-309N11, complete sequence
          Length = 186431

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 656  ctgatgaagtcaaaccttga 675
            ||||||||||||||||||||
Sbjct: 8109 ctgatgaagtcaaaccttga 8128

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>gb|AY647312.1| Natronococcus occultus strain MSU4810 16S ribosomal RNA gene,
           partial sequence
          Length = 854

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 399 gacgtacttcccaggcgctttgct 422
           ||||||||||||||||| ||||||
Sbjct: 777 gacgtacttcccaggcggtttgct 754

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>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02,
             complete sequence
          Length = 138584

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   cccaaaagaacaaaaagaat 131
             ||||||||||||||||||||
Sbjct: 97538 cccaaaagaacaaaaagaat 97519

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 108      tccccccaaaagaacaaaaa 127
                ||||||||||||||||||||
Sbjct: 15740349 tccccccaaaagaacaaaaa 15740368

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>gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosome 9, complete sequence
          Length = 148114

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   cttttggaaagatctgtatg 466
             ||||||||||||||||||||
Sbjct: 84568 cttttggaaagatctgtatg 84549

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>gb|AC121877.2| Mus musculus BAC clone RP24-127G8 from 7, complete sequence
          Length = 130451

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 585   tctctctttcacagcagttc 604
             ||||||||||||||||||||
Sbjct: 22729 tctctctttcacagcagttc 22710

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>emb|AL391873.15| Human DNA sequence from clone RP11-399N11 on chromosome 13, complete
              sequence
          Length = 161317

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     cgaatatgctataacaagaa 93
              ||||||||||||||||||||
Sbjct: 109142 cgaatatgctataacaagaa 109123

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>emb|AL109807.16|HSJ1185K9 Human DNA sequence from clone RP5-1185K9 on chromosome 20 Contains a
            novel gene, complete sequence
          Length = 114007

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  agaacaaaaagaatctcagc 137
            ||||||||||||||||||||
Sbjct: 9786 agaacaaaaagaatctcagc 9767

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>dbj|AK052468.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430030M17 product:hypothetical Eukaryotic
            protein kinase/Glutamine-rich region containing protein,
            full insert sequence
          Length = 3623

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 656  ctgatgaagtcaaaccttga 675
            ||||||||||||||||||||
Sbjct: 1873 ctgatgaagtcaaaccttga 1854

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>gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genomic sequence, complete
              sequence
          Length = 178748

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    tccccccaaaagaacaaaaa 127
              ||||||||||||||||||||
Sbjct: 150303 tccccccaaaagaacaaaaa 150322

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 112      cccaaaagaacaaaaagaat 131
                ||||||||||||||||||||
Sbjct: 23893703 cccaaaagaacaaaaagaat 23893684

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 108      tccccccaaaagaacaaaaa 127
                ||||||||||||||||||||
Sbjct: 15734883 tccccccaaaagaacaaaaa 15734902

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 90       agaatttcagcattccaatc 109
                ||||||||||||||||||||
Sbjct: 21378359 agaatttcagcattccaatc 21378378

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>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0496H05
          Length = 147817

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     agaatttcagcattccaatc 109
              ||||||||||||||||||||
Sbjct: 100297 agaatttcagcattccaatc 100316

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 372     cagctcgagctgctcaggcg 391
               ||||||||||||||||||||
Sbjct: 6439065 cagctcgagctgctcaggcg 6439046

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>dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0468H06
          Length = 155031

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    agaatttcagcattccaatc 109
             ||||||||||||||||||||
Sbjct: 19745 agaatttcagcattccaatc 19764

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>dbj|AK172935.1| Mus musculus mRNA for mKIAA0344 protein
          Length = 5030

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 656  ctgatgaagtcaaaccttga 675
            ||||||||||||||||||||
Sbjct: 3280 ctgatgaagtcaaaccttga 3261

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>ref|XM_319575.2| Anopheles gambiae str. PEST ENSANGP00000006376 (ENSANGG00000004836),
            partial mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  ggcgctttgctgttctcgat 431
            ||||||||||||||||||||
Sbjct: 1844 ggcgctttgctgttctcgat 1825

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>dbj|AK066065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055K24, full
            insert sequence
          Length = 2735

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  cccaaaagaacaaaaagaat 131
            ||||||||||||||||||||
Sbjct: 2586 cccaaaagaacaaaaagaat 2567

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>emb|AL132865.1|CEY62E10A Caenorhabditis elegans YAC Y62E10A, complete sequence
          Length = 57237

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   tccccccaaaagaacaaaaa 127
             ||||||||||||||||||||
Sbjct: 37614 tccccccaaaagaacaaaaa 37633

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>emb|AL844548.7| Mouse DNA sequence from clone RP23-263D22 on chromosome 2, complete
             sequence
          Length = 198946

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ccccaaaagaacaaaaagaa 130
             ||||||||||||||||||||
Sbjct: 63823 ccccaaaagaacaaaaagaa 63804

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>emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chromosome 4, complete
             sequence
          Length = 216239

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ccccccaaaagaacaaaaag 128
             ||||||||||||||||||||
Sbjct: 69184 ccccccaaaagaacaaaaag 69165

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>gb|AC164160.5| Mus musculus BAC clone RP23-343P15 from chromosome 7, complete sequence
          Length = 235030

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 585    tctctctttcacagcagttc 604
              ||||||||||||||||||||
Sbjct: 118538 tctctctttcacagcagttc 118519

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>gb|M15347.1|HUMTGPL2 Human Pro-tRNA and Thr-tRNA genes
          Length = 1321

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 488 ctgccagtctcagtgactct 507
           ||||||||||||||||||||
Sbjct: 809 ctgccagtctcagtgactct 790


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,951,407
Number of Sequences: 3902068
Number of extensions: 5951407
Number of successful extensions: 164325
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 163970
Number of HSP's gapped (non-prelim): 355
length of query: 702
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 679
effective length of database: 17,143,297,704
effective search space: 11640299141016
effective search space used: 11640299141016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result