ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9o24 |
|---|---|
| Clone Library Name | barley_pub |
>ARFI_ARATH (Q9XED8) Auxin response factor 9| Length = 638 Score = 34.3 bits (77), Expect = 0.33 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Frame = +3 Query: 168 LGLPMERDT-KTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLPSQF 344 + L E+DT + + L P T D P+PSPP + H+ T +D Sbjct: 71 VSLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTHGG 130 Query: 345 NSSTQSHYTFEQTCIQPEDSIQHQPTQ 425 S + H T C+ P D Q PTQ Sbjct: 131 FSVLRKHAT---ECLPPLDMTQQTPTQ 154
>NCAM1_CHICK (P13590) Neural cell adhesion molecule 1, 180 kDa isoform precursor| (N-CAM 180) Length = 1091 Score = 32.3 bits (72), Expect = 1.3 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 12/126 (9%) Frame = +3 Query: 192 TKTPKKPPLEPANTNFDSTDR--------PNPSPPITYKTHNHTAFSDSTKADVLPSQFN 347 +K K P+ T + T PN + P+T HTA + +T D+LPS Sbjct: 770 SKDESKEPIVEVRTEEERTPNHDGGKHTEPNETTPLTEP--EHTADTAATVEDMLPSVTT 827 Query: 348 SSTQSHYTFEQTCIQPEDSIQHQPT-QAGRINQSIASSSYRKP-HNVLRPGHLTDRR--L 515 +T S T + + Q+ PT + + SIA + P N + PG T + Sbjct: 828 GTTNS-----DTITETFATAQNSPTSETTTLTSSIAPPATAIPDSNAMSPGQATPAKAGA 882 Query: 516 CPISCP 533 P+S P Sbjct: 883 SPVSPP 888
>LR37B_HUMAN (Q96QE4) Leucine-rich repeat-containing protein 37B precursor (C66| SLIT-like testicular protein) Length = 947 Score = 31.6 bits (70), Expect = 2.2 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 13/107 (12%) Frame = +3 Query: 195 KTPKKPP--LEPANTNFDSTDRPNPSPPITY--KTHNHTAFSDSTKADVLP--------S 338 + P +PP EP++T +TD P P +T S T+A V P + Sbjct: 368 EAPIQPPEEAEPSSTALRTTDPPPEHPEVTLPPSDKGQAQHSHLTEATVQPLDLELSITT 427 Query: 339 QFNSSTQSHYTFEQTCIQPED-SIQHQPTQAGRINQSIASSSYRKPH 476 + + + T E+T QP D + P I S A R PH Sbjct: 428 EPTTEVKPSPTTEETSAQPPDPGLAITPEPTTEIGHSTALEKTRAPH 474
>POM1_SCHPO (Q09690) Dual specificity protein kinase pom1 (EC 2.7.12.1)| Length = 1087 Score = 31.2 bits (69), Expect = 2.8 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = +1 Query: 319 KQTSSRRNSIPRLSHTTLLSRPVYNQRTAYNTSQPRQAESTNQSHHH 459 +Q +S RNSI RLS+ ++ + P+ + +SQ S N S HH Sbjct: 130 RQKNSPRNSIHRLSNISIGNNPI-----DFESSQQNNPSSLNTSSHH 171
>YR335_MIMIV (Q5UQT2) Hypothetical protein R335| Length = 306 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/84 (23%), Positives = 35/84 (41%) Frame = +3 Query: 240 DSTDRPNPSPPITYKTHNHTAFSDSTKADVLPSQFNSSTQSHYTFEQTCIQPEDSIQHQP 419 DS + + P +TH ++ + + P+Q N Q + QP Q+QP Sbjct: 103 DSKESGSEYPQSVQQTHQQPIQNNPSIPNNQPNQINQYNQQPNQYNHQ--QPNQFTQNQP 160 Query: 420 TQAGRINQSIASSSYRKPHNVLRP 491 Q + NQ S + +P+ +P Sbjct: 161 NQPNQPNQHNQYSQHNQPNQSNQP 184
>ZFN2_ARATH (O48772) Zinc finger CCCH type domain-containing protein ZFN2| Length = 453 Score = 30.8 bits (68), Expect = 3.7 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +1 Query: 376 SRPVYNQRTAYNTSQPRQAESTNQSHHHHIGNHTMC 483 S P+YN +T ++S T SHHH C Sbjct: 232 SNPIYNMKTQLDSSSSASVAVTVTSHHHSFSERAEC 267
>HUNB_DROMU (O46250) Protein hunchback (Fragments)| Length = 174 Score = 30.4 bits (67), Expect = 4.8 Identities = 19/74 (25%), Positives = 30/74 (40%) Frame = +3 Query: 177 PMERDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLPSQFNSST 356 P D +P P P ++ RP+P P T T TA K + P + Sbjct: 86 PSNNDQNSPGLP--NPMQPTMPASMRPSPQPTPTRATAVATALQTGDKLQLTPPMDVTPP 143 Query: 357 QSHYTFEQTCIQPE 398 +S +Q+ ++PE Sbjct: 144 KSPAKSQQSSVEPE 157
>VHS2_YEAST (P40463) Protein VHS2 (Viable in a HAL3 SIT4 background protein 2)| Length = 436 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/102 (23%), Positives = 41/102 (40%) Frame = +3 Query: 183 ERDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLPSQFNSSTQS 362 +R+ PP + + +R P YKT ++ A + ++ S FN + S Sbjct: 17 QRENDNNYMPPSPSMSESSMIFERNVEDPSYLYKTVSNNAANSLSRQSSRTSLFNHNNSS 76 Query: 363 HYTFEQTCIQPEDSIQHQPTQAGRINQSIASSSYRKPHNVLR 488 + F + S + Q R N+SIAS P V++ Sbjct: 77 NRNFHN--LSQRSSAVNLHLQPSRTNESIASYQTYNPDFVVQ 116
>BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle protein 1)| Length = 963 Score = 30.0 bits (66), Expect = 6.3 Identities = 19/80 (23%), Positives = 30/80 (37%) Frame = +3 Query: 186 RDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLPSQFNSSTQSH 365 + T++P PP + +DS + PS P Y T D +P+ Q Sbjct: 251 KPTRSPNTPPPRQPSGGYDSDGQTPPSSPRIYNTRRPNNHGPGYPEDQVPTAPPVPGQQR 310 Query: 366 YTFEQTCIQPEDSIQHQPTQ 425 QT P + QP++ Sbjct: 311 VPPTQTRNPPNPTNTRQPSR 330
>DIDO1_MOUSE (Q8C9B9) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (Fragments) Length = 1956 Score = 30.0 bits (66), Expect = 6.3 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 4/98 (4%) Frame = +3 Query: 174 LPMERDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLP---SQF 344 +P D PKK L ++ D R + SPP +D AD LP S+ Sbjct: 857 VPSSEDEPAPKKQKLSASSKKEDFKPRHDSSPPNAVPN-----TADEGIADTLPENASEP 911 Query: 345 NSSTQSHYTFEQTCIQPEDSIQH-QPTQAGRINQSIAS 455 + + S E+ C H +P+ G ++ S AS Sbjct: 912 DPESTSSLNQERKCFPESPGDSHPEPSSLGGLSPSSAS 949
>RSP1_SCHPO (O13601) DnaJ-related protein rsp1| Length = 494 Score = 30.0 bits (66), Expect = 6.3 Identities = 22/85 (25%), Positives = 37/85 (43%) Frame = +3 Query: 159 MLLLGLPMERDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLPS 338 + L L +R T TP N+N S P + + N+ F D+++ ++ + Sbjct: 213 LYLESLREKRRTYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESIIFT 272 Query: 339 QFNSSTQSHYTFEQTCIQPEDSIQH 413 N T H + QT I PE ++H Sbjct: 273 SPN--TPEHPSVYQTDITPEIKLEH 295
>HEX2_YEAST (Q00816) Protein HEX2 (Protein SRN1) (Protein REG1)| Length = 1014 Score = 30.0 bits (66), Expect = 6.3 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +3 Query: 189 DTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLPSQFNSS 353 ++K P L A+ N +T R + S + Y N+++ SDS + + SQ+NSS Sbjct: 689 ESKEKHVPQLHKASAN--NTTRQHGSHMLLYDDDNYSSSSDSEQQFIEDSQYNSS 741
>YB4F_SCHPO (O14360) Hypothetical protein C30D10.15 in chromosome II| Length = 516 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%) Frame = +3 Query: 231 TNFDSTDRPNPSPPITYKTHNHTAFSDSTKADVLPSQFNSSTQSHYTFEQTCIQPE---- 398 TN + I TH++++ S+ AD L S +S ++S+ +F +T ++ E Sbjct: 156 TNSSEKSNVKIADEIAEVTHSNSSIGKSS-AD-LSSDSSSDSESNTSFSETDVEEEKAEE 213 Query: 399 --DSIQHQPTQAGRINQSIASSSYRKPHNVLRPGHLTD 506 D+ P+ + + Y KP VL+P L + Sbjct: 214 KSDAESMAPSTPPKTVNELPEQIYEKPEIVLQPNSLIE 251
>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1213 Score = 29.6 bits (65), Expect = 8.2 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +3 Query: 168 LGLPMERDTKTPKKPPLEPANTNFDSTDRPNPSPPITYKTHNHTAFSDST 317 LGLP P P + P + DS P PP + H+H F+ T Sbjct: 1079 LGLPFGMPPPPPAAPSVIPFGSLADSISINLPPPPNLHGHHHHLPFAPGT 1128
>HISX_AZOBR (P18786) Putative histidinol dehydrogenase (EC 1.1.1.23) (HDH)| (Fragment) Length = 128 Score = 29.6 bits (65), Expect = 8.2 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -3 Query: 559 GAEHQKRREGHEIGQSRRSVRC 494 G +HQ+ REG E RR VRC Sbjct: 67 GGQHQQGREGQEKASGRRHVRC 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,565,851 Number of Sequences: 219361 Number of extensions: 1556812 Number of successful extensions: 5516 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4888 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5460 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
