ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags9o14 |
|---|---|
| Clone Library Name | barley_pub |
>RHG08_MOUSE (Q9CXP4) Rho-GTPase-activating protein 8| Length = 425 Score = 35.4 bits (80), Expect = 0.039 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = +3 Query: 87 QPSLGFIQTTV-EIRKSRNKNVFPLFICHSTIVVVAAWKIFR 209 +PSLG++Q T E + KN+ L++ H T ++ A W IF+ Sbjct: 84 KPSLGWLQNTYKEFDRKYKKNLKALYVVHPTSLIKALWNIFK 125
>MFD_RICPR (O05955) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1120 Score = 30.8 bits (68), Expect = 0.97 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = +2 Query: 38 IKQYSISKLKNLGLNKATQPRLYSNNCRNTKISKQERISAIHMPLYYCSCSSLED 202 I + + L+N G+N P LY K + E++ +PL+Y SCSSL D Sbjct: 210 IGNFKNNYLRNFGVNHTDNP-LYEAVISGRKFAGYEQL----LPLFYYSCSSLVD 259
>GLYA_AQUAE (O66776) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 428 Score = 29.6 bits (65), Expect = 2.2 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +3 Query: 21 ISYTQRLNNTRFRSLKILV*TRQPSLGFIQTTVEIRKSRNKNVFP 155 + Y Q + +T ++L R P GFI TT E K+ +K+VFP Sbjct: 214 VPYAQFVTSTTHKTL------RGPRSGFILTTKEYAKAVDKSVFP 252
>HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-like protein 1| Length = 859 Score = 28.5 bits (62), Expect = 4.8 Identities = 14/32 (43%), Positives = 14/32 (43%) Frame = -3 Query: 242 GPTLDSTLPPPPEDLPSCYNYNSRVAYE*RKY 147 G T T PPPP P YNY S Y Y Sbjct: 769 GYTQGYTAPPPPPPPPPAYNYGSYGPYNPAPY 800
>PANC_STAAW (Q8NUN2) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 283 Score = 28.1 bits (61), Expect = 6.3 Identities = 17/74 (22%), Positives = 39/74 (52%) Frame = +2 Query: 23 IIHSAIKQYSISKLKNLGLNKATQPRLYSNNCRNTKISKQERISAIHMPLYYCSCSSLED 202 I+ +K ++ + ++ +G++ + + + RN +++QER A+H+ +L Sbjct: 157 IVEQMVKDFNHA-VEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQAL-- 213 Query: 203 LQEGEEESNPKLDR 244 Q+GE +S +DR Sbjct: 214 YQDGERQSKVIIDR 227
>PANC_STAAS (Q6G678) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 283 Score = 28.1 bits (61), Expect = 6.3 Identities = 17/74 (22%), Positives = 39/74 (52%) Frame = +2 Query: 23 IIHSAIKQYSISKLKNLGLNKATQPRLYSNNCRNTKISKQERISAIHMPLYYCSCSSLED 202 I+ +K ++ + ++ +G++ + + + RN +++QER A+H+ +L Sbjct: 157 IVEQMVKDFNHA-VEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQAL-- 213 Query: 203 LQEGEEESNPKLDR 244 Q+GE +S +DR Sbjct: 214 YQDGERQSKVIIDR 227
>PANC_STAAN (P65659) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 283 Score = 28.1 bits (61), Expect = 6.3 Identities = 17/74 (22%), Positives = 39/74 (52%) Frame = +2 Query: 23 IIHSAIKQYSISKLKNLGLNKATQPRLYSNNCRNTKISKQERISAIHMPLYYCSCSSLED 202 I+ +K ++ + ++ +G++ + + + RN +++QER A+H+ +L Sbjct: 157 IVEQMVKDFNHA-VEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQAL-- 213 Query: 203 LQEGEEESNPKLDR 244 Q+GE +S +DR Sbjct: 214 YQDGERQSKVIIDR 227
>PANC_STAAM (P65658) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 283 Score = 28.1 bits (61), Expect = 6.3 Identities = 17/74 (22%), Positives = 39/74 (52%) Frame = +2 Query: 23 IIHSAIKQYSISKLKNLGLNKATQPRLYSNNCRNTKISKQERISAIHMPLYYCSCSSLED 202 I+ +K ++ + ++ +G++ + + + RN +++QER A+H+ +L Sbjct: 157 IVEQMVKDFNHA-VEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQAL-- 213 Query: 203 LQEGEEESNPKLDR 244 Q+GE +S +DR Sbjct: 214 YQDGERQSKVIIDR 227
>PANC_STAAC (Q5HCV4) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 283 Score = 28.1 bits (61), Expect = 6.3 Identities = 17/74 (22%), Positives = 39/74 (52%) Frame = +2 Query: 23 IIHSAIKQYSISKLKNLGLNKATQPRLYSNNCRNTKISKQERISAIHMPLYYCSCSSLED 202 I+ +K ++ + ++ +G++ + + + RN +++QER A+H+ +L Sbjct: 157 IVEQMVKDFNHA-VEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQAL-- 213 Query: 203 LQEGEEESNPKLDR 244 Q+GE +S +DR Sbjct: 214 YQDGERQSKVIIDR 227
>UN84B_HUMAN (Q9UH99) Sad1/unc-84-like protein 2 (Rab5-interacting protein)| (Rab5IP) Length = 717 Score = 27.7 bits (60), Expect = 8.2 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Frame = +2 Query: 11 EVHYIIHSAIKQYSISK--LKNLGLNKATQPRLYSNNCRNTKISKQERISAIHMPLYYCS 184 +VH+I+ A+++YS + L + L ++ + S C T +K +S +PL+Y S Sbjct: 527 QVHHIVKQALQRYSEDRIGLADYAL-ESGGASVISTRCSETYETKTALLSLFGIPLWYHS 585 Query: 185 CSSLEDLQEGEEESN 229 S LQ N Sbjct: 586 QSPRVILQPDVHPGN 600
>HNRL1_HUMAN (Q9BUJ2) Heterogeneous nuclear ribonucleoprotein U-like protein 1| (Adenovirus early region 1B-associated protein 5) (E1B-55 kDa-associated protein 5) (E1B-AP5) Length = 856 Score = 27.7 bits (60), Expect = 8.2 Identities = 12/26 (46%), Positives = 12/26 (46%) Frame = -3 Query: 224 TLPPPPEDLPSCYNYNSRVAYE*RKY 147 T PPPP P YNY S Y Y Sbjct: 772 TAPPPPPPPPPAYNYGSYGGYNPAPY 797
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 27.7 bits (60), Expect = 8.2 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 62 LKNLGLNKATQPRLYSNNCRNTKISKQERISAI 160 L N+ LN PR S +C N K ++Q+ I Sbjct: 9 LNNISLNSKQNPRSISKSCPNDKDARQKSFKTI 41 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,927,683 Number of Sequences: 219361 Number of extensions: 537160 Number of successful extensions: 1707 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1653 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1707 length of database: 80,573,946 effective HSP length: 56 effective length of database: 68,289,730 effective search space used: 1638953520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
