ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9o14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, comp... 42 0.80
2gb|AC130277.6| Mus musculus chromosome 1, clone RP24-387G4, comp... 42 0.80
3emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 i... 40 3.1
4emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chro... 40 3.1
5emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chr... 40 3.1
6gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cance... 40 3.1
7gb|BC032871.2| Homo sapiens cDNA clone IMAGE:5264902, partial cds 40 3.1
8gb|AC026801.7| Homo sapiens chromosome 5 clone CTD-2517O10, comp... 40 3.1
9emb|CR925751.6| Zebrafish DNA sequence from clone DKEY-264M23 in... 40 3.1

>gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, complete sequence
          Length = 247961

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    aggctttattcaaacaactgt 118
             |||||||||||||||||||||
Sbjct: 60267 aggctttattcaaacaactgt 60287



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>gb|AC130277.6| Mus musculus chromosome 1, clone RP24-387G4, complete sequence
          Length = 125118

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 98  aggctttattcaaacaactgt 118
           |||||||||||||||||||||
Sbjct: 833 aggctttattcaaacaactgt 813



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>emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 in linkage group 10,
            complete sequence
          Length = 200648

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   cactcagcgattaaacaata 48
            ||||||||||||||||||||
Sbjct: 7575 cactcagcgattaaacaata 7594



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>emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chromosome 10 Contains two
             novel genes, the 5'end of the gene for VPS10 domain
             receptor protein SORCS 3 (SORCS3) and a CpG island,
             complete sequence
          Length = 153764

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   ggaagagtcgaatccaaagttgga 240
             ||||||||| ||||||||||||||
Sbjct: 91740 ggaagagtcaaatccaaagttgga 91717



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>emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chromosome 10 Contains two
              novel genes, the 5'end of the gene for VPS10 domain
              receptor protein SORCS 3 (SORCS3) and one CpG island,
              complete sequence
          Length = 183833

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 217    ggaagagtcgaatccaaagttgga 240
              ||||||||| ||||||||||||||
Sbjct: 177883 ggaagagtcaaatccaaagttgga 177860



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>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 128301

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 119    agaaatacgaaaatctcgaaacaa 142
              ||||||| ||||||||||||||||
Sbjct: 112244 agaaataggaaaatctcgaaacaa 112267



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>gb|BC032871.2| Homo sapiens cDNA clone IMAGE:5264902, partial cds
          Length = 3421

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 79  aaacaaggcaacccagcctaggct 102
           ||||||||||||||||||| ||||
Sbjct: 669 aaacaaggcaacccagcctgggct 646



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>gb|AC026801.7| Homo sapiens chromosome 5 clone CTD-2517O10, complete sequence
          Length = 177284

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 79     aaacaaggcaacccagcctaggct 102
              ||||||||||||||||||| ||||
Sbjct: 109248 aaacaaggcaacccagcctgggct 109225



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>emb|CR925751.6| Zebrafish DNA sequence from clone DKEY-264M23 in linkage group 10,
              complete sequence
          Length = 111720

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     cactcagcgattaaacaata 48
              ||||||||||||||||||||
Sbjct: 101117 cactcagcgattaaacaata 101136


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,989,423
Number of Sequences: 3902068
Number of extensions: 1989423
Number of successful extensions: 41609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41597
Number of HSP's gapped (non-prelim): 12
length of query: 244
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 222
effective length of database: 17,147,199,772
effective search space: 3806678349384
effective search space used: 3806678349384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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