ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9o07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ013311.1| Oligocottus maculosus heat shock protein 90 (Hsp9... 42 1.7
2gb|AC140306.3| Mus musculus BAC clone RP23-386L13 from 8, comple... 42 1.7
3gb|AY395632.1| Dicentrarchus labrax HSP-90 mRNA, complete cds 40 6.6
4gb|AC007578.6| Drosophila melanogaster clone BACR09A11, complete... 40 6.6
5gb|AE006376.1| Lactococcus lactis subsp. lactis IL1403 section 1... 40 6.6
6gb|AE014075.1| Escherichia coli CFT073, complete genome 40 6.6
7gb|CP000243.1| Escherichia coli UTI89, complete genome 40 6.6
8gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 6.6
9gb|AC155936.7| Mus musculus 10 BAC RP24-397C20 (Roswell Park Can... 40 6.6
10gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, ... 40 6.6
11gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25... 40 6.6

>gb|DQ013311.1| Oligocottus maculosus heat shock protein 90 (Hsp90) mRNA, partial
           cds
          Length = 811

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 217 ctctggcagctccagaccctc 237
           |||||||||||||||||||||
Sbjct: 568 ctctggcagctccagaccctc 548



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>gb|AC140306.3| Mus musculus BAC clone RP23-386L13 from 8, complete sequence
          Length = 220059

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     gaagatacaaaacagtcttgg 68
              |||||||||||||||||||||
Sbjct: 143655 gaagatacaaaacagtcttgg 143675



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>gb|AY395632.1| Dicentrarchus labrax HSP-90 mRNA, complete cds
          Length = 2265

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 218  tctggcagctccagaccctc 237
            ||||||||||||||||||||
Sbjct: 1713 tctggcagctccagaccctc 1694



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>gb|AC007578.6| Drosophila melanogaster clone BACR09A11, complete sequence
          Length = 170684

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  gcagttccaaatccaaaacc 340
            ||||||||||||||||||||
Sbjct: 9221 gcagttccaaatccaaaacc 9240



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>gb|AE006376.1| Lactococcus lactis subsp. lactis IL1403 section 138 of 218 of the
           complete genome
          Length = 10658

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 cgaaaaaatatcagaaacgc 163
           ||||||||||||||||||||
Sbjct: 224 cgaaaaaatatcagaaacgc 243



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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 395     ggaatgttgcgtgatgctgc 414
               ||||||||||||||||||||
Sbjct: 5212275 ggaatgttgcgtgatgctgc 5212294



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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 395     ggaatgttgcgtgatgctgc 414
               ||||||||||||||||||||
Sbjct: 5046588 ggaatgttgcgtgatgctgc 5046607



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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    gaaacgcgtgttgccggctg 176
              ||||||||||||||||||||
Sbjct: 254796 gaaacgcgtgttgccggctg 254777



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>gb|AC155936.7| Mus musculus 10 BAC RP24-397C20 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 177791

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 327   ccaaatccaaaaccaaagaaatcc 350
             ||||| ||||||||||||||||||
Sbjct: 63283 ccaaaaccaaaaccaaagaaatcc 63306



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>gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, region 48A-48B, BAC clone
            BACR38D12, complete sequence
          Length = 171831

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 321  gcagttccaaatccaaaacc 340
            ||||||||||||||||||||
Sbjct: 8728 gcagttccaaatccaaaacc 8709



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>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete
             sequence
          Length = 261690

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   gcagttccaaatccaaaacc 340
             ||||||||||||||||||||
Sbjct: 86901 gcagttccaaatccaaaacc 86882


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,906,777
Number of Sequences: 3902068
Number of extensions: 3906777
Number of successful extensions: 74788
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74762
Number of HSP's gapped (non-prelim): 26
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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