ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9o06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191342.1| Oryza sativa (japonica cultivar-group), predic... 172 1e-39
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
3dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
4dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
5gb|AY107386.1| Zea mays PCO077290 mRNA sequence 123 8e-25
6ref|XM_475705.1| Oryza sativa (japonica cultivar-group), predic... 86 2e-13
7gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome... 70 1e-08
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
9ref|NM_104467.4| Arabidopsis thaliana TIM50 AT1G55900 (TIM50) mR... 58 4e-05
10gb|AY122975.1| Arabidopsis thaliana unknown protein (At1g55900) ... 58 4e-05
11gb|AY072140.1| Arabidopsis thaliana unknown protein (At1g55900) ... 58 4e-05
12dbj|AK221878.1| Arabidopsis thaliana mRNA for hypothetical prote... 58 4e-05
13emb|BX815907.1|CNS0ABUR Arabidopsis thaliana Full-length cDNA Co... 58 4e-05
14ref|XM_463449.1| Oryza sativa (japonica cultivar-group), predic... 48 0.039
15gb|AC145798.2| Xenopus tropicalis clone CH216-53L7, complete seq... 42 2.4
16gb|CP000302.1| Shewanella denitrificans OS217, complete genome 42 2.4
17gb|AC013701.6| Homo sapiens, clone RP11-22C8, complete sequence 42 2.4
18emb|BX324224.11| Zebrafish DNA sequence from clone CH211-168H21 ... 42 2.4
19dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
20dbj|AK073433.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
21ref|XM_636840.1| Dictyostelium discoideum hypothetical protein (... 40 9.4
22gb|AC111103.7| Mus musculus chromosome 16, clone RP23-187G7, com... 40 9.4
23emb|AL161901.18| Human DNA sequence from clone RP11-521H3 on chr... 40 9.4
24gb|BC041832.1| Homo sapiens cDNA clone IMAGE:5268251 40 9.4
25gb|AC078963.16| Homo sapiens 12q BAC RP11-362K2 (Roswell Park Ca... 40 9.4
26emb|BX908736.10| Zebrafish DNA sequence from clone CH211-229C8 i... 40 9.4
27gb|AC156552.10| Mus musculus chromosome 3, clone RP24-271K21, co... 40 9.4
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
29gb|AC002304.3|AC002304 Genomic sequence for Arabidopsis thaliana... 40 9.4
30gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complet... 40 9.4
31gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, compl... 40 9.4
32dbj|AP000924.7| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.4
33dbj|AP001883.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.4
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.4
35emb|AL929350.3|CNS08CCE Oryza sativa chromosome 12, . BAC OSJNBb... 40 9.4
36emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb... 40 9.4
37gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, comple... 40 9.4
38emb|CT030649.7| Mouse DNA sequence from clone RP24-354G13 on chr... 40 9.4
39dbj|AB030754.1| Mus musculus prkdc gene for DNA-dependent protei... 40 9.4 
>ref|NM_191342.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 789

 Score =  172 bits (87), Expect = 1e-39
 Identities = 126/139 (90%)
 Strand = Plus / Minus

                                                                       
Query: 535 cccgatagtgttttccatgcacatatttagttgcaactcttgataacctgtgccggacac 594
           ||||||||||||||||||   |||||||||||||||||||||||||||||||| | ||||
Sbjct: 781 cccgatagtgttttccattttcatatttagttgcaactcttgataacctgtgctgaacac 722

                                                                       
Query: 595 agccttttgcatccagtctttccataacaggatcaacatacatacttaattgatcagaat 654
           |||| |||| |||||||||||| ||||||||||||||||||||||| |  |||||||| |
Sbjct: 721 agccctttggatccagtctttcaataacaggatcaacatacatactcagctgatcagagt 662

                              
Query: 655 acacaacaacttcatagaa 673
           ||||||||| |||||||||
Sbjct: 661 acacaacaatttcatagaa 643
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  155 bits (78), Expect = 2e-34
 Identities = 138/158 (87%)
 Strand = Plus / Plus

                                                                            
Query: 379      attcaagcaatggaataagatcaatcagttgagtgtcctcggcttcaagcttccaaggtt 438
                ||||||| || ||||||||||||| |||||||||||| ||   |||||||||||||||||
Sbjct: 32067921 attcaagaaagggaataagatcaagcagttgagtgtcatcattttcaagcttccaaggtt 32067980

                                                                            
Query: 439      tgatcggcaaacaattttcaggctgcaggcatgactcaagagcatgcccactgatataaa 498
                |||||   | |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 32067981 tgatctcaacacaattttcaggctgcaggcatgattccagagcatgcccactgatataaa 32068040

                                                      
Query: 499      taactcgtgcagggtctctgttcagctttgacaaatcc 536
                | ||| |||| || | |||||| |||||||| ||||||
Sbjct: 32068041 tgacttgtgcgggatttctgtttagctttgataaatcc 32068078



 Score =  137 bits (69), Expect = 5e-29
 Identities = 93/101 (92%)
 Strand = Plus / Plus

                                                                            
Query: 535      cccgatagtgttttccatgcacatatttagttgcaactcttgataacctgtgccggacac 594
                ||||||||||||||||||   |||||||||||||||||||||||||||||||| | ||||
Sbjct: 32072664 cccgatagtgttttccattttcatatttagttgcaactcttgataacctgtgctgaacac 32072723

                                                         
Query: 595      agccttttgcatccagtctttccataacaggatcaacatac 635
                |||| |||| |||||||||||| ||||||||||||||||||
Sbjct: 32072724 agccctttggatccagtctttcaataacaggatcaacatac 32072764



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                            
Query: 291      gaacgctcaataaattcggcagcgatgtcacggccttcaaaggatgcaaggacaggtctg 350
                |||||||||||||| || ||||  || |||||||||| | |||| ||||| ||||  |||
Sbjct: 32067632 gaacgctcaataaactcagcaggtatatcacggccttgataggacgcaagaacagccctg 32067691

                                            
Query: 351      atgtcagaaactcttgccatagcgacat 378
                || || |||  |||||||||||| ||||
Sbjct: 32067692 atatccgaaggtcttgccatagcaacat 32067719



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 148      attacaaagacaagtcttaca 168
                |||||||||||||||||||||
Sbjct: 42186220 attacaaagacaagtcttaca 42186200
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>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0512C01
          Length = 176261

 Score =  155 bits (78), Expect = 2e-34
 Identities = 138/158 (87%)
 Strand = Plus / Plus

                                                                          
Query: 379    attcaagcaatggaataagatcaatcagttgagtgtcctcggcttcaagcttccaaggtt 438
              ||||||| || ||||||||||||| |||||||||||| ||   |||||||||||||||||
Sbjct: 109735 attcaagaaagggaataagatcaagcagttgagtgtcatcattttcaagcttccaaggtt 109794

                                                                          
Query: 439    tgatcggcaaacaattttcaggctgcaggcatgactcaagagcatgcccactgatataaa 498
              |||||   | |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 109795 tgatctcaacacaattttcaggctgcaggcatgattccagagcatgcccactgatataaa 109854

                                                    
Query: 499    taactcgtgcagggtctctgttcagctttgacaaatcc 536
              | ||| |||| || | |||||| |||||||| ||||||
Sbjct: 109855 tgacttgtgcgggatttctgtttagctttgataaatcc 109892



 Score =  137 bits (69), Expect = 5e-29
 Identities = 93/101 (92%)
 Strand = Plus / Plus

                                                                          
Query: 535    cccgatagtgttttccatgcacatatttagttgcaactcttgataacctgtgccggacac 594
              ||||||||||||||||||   |||||||||||||||||||||||||||||||| | ||||
Sbjct: 114478 cccgatagtgttttccattttcatatttagttgcaactcttgataacctgtgctgaacac 114537

                                                       
Query: 595    agccttttgcatccagtctttccataacaggatcaacatac 635
              |||| |||| |||||||||||| ||||||||||||||||||
Sbjct: 114538 agccctttggatccagtctttcaataacaggatcaacatac 114578



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                          
Query: 291    gaacgctcaataaattcggcagcgatgtcacggccttcaaaggatgcaaggacaggtctg 350
              |||||||||||||| || ||||  || |||||||||| | |||| ||||| ||||  |||
Sbjct: 109446 gaacgctcaataaactcagcaggtatatcacggccttgataggacgcaagaacagccctg 109505

                                          
Query: 351    atgtcagaaactcttgccatagcgacat 378
              || || |||  |||||||||||| ||||
Sbjct: 109506 atatccgaaggtcttgccatagcaacat 109533
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>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0460E08
          Length = 170021

 Score =  155 bits (78), Expect = 2e-34
 Identities = 138/158 (87%)
 Strand = Plus / Plus

                                                                          
Query: 379    attcaagcaatggaataagatcaatcagttgagtgtcctcggcttcaagcttccaaggtt 438
              ||||||| || ||||||||||||| |||||||||||| ||   |||||||||||||||||
Sbjct: 164648 attcaagaaagggaataagatcaagcagttgagtgtcatcattttcaagcttccaaggtt 164707

                                                                          
Query: 439    tgatcggcaaacaattttcaggctgcaggcatgactcaagagcatgcccactgatataaa 498
              |||||   | |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 164708 tgatctcaacacaattttcaggctgcaggcatgattccagagcatgcccactgatataaa 164767

                                                    
Query: 499    taactcgtgcagggtctctgttcagctttgacaaatcc 536
              | ||| |||| || | |||||| |||||||| ||||||
Sbjct: 164768 tgacttgtgcgggatttctgtttagctttgataaatcc 164805



 Score =  137 bits (69), Expect = 5e-29
 Identities = 93/101 (92%)
 Strand = Plus / Plus

                                                                          
Query: 535    cccgatagtgttttccatgcacatatttagttgcaactcttgataacctgtgccggacac 594
              ||||||||||||||||||   |||||||||||||||||||||||||||||||| | ||||
Sbjct: 169391 cccgatagtgttttccattttcatatttagttgcaactcttgataacctgtgctgaacac 169450

                                                       
Query: 595    agccttttgcatccagtctttccataacaggatcaacatac 635
              |||| |||| |||||||||||| ||||||||||||||||||
Sbjct: 169451 agccctttggatccagtctttcaataacaggatcaacatac 169491



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                          
Query: 291    gaacgctcaataaattcggcagcgatgtcacggccttcaaaggatgcaaggacaggtctg 350
              |||||||||||||| || ||||  || |||||||||| | |||| ||||| ||||  |||
Sbjct: 164359 gaacgctcaataaactcagcaggtatatcacggccttgataggacgcaagaacagccctg 164418

                                          
Query: 351    atgtcagaaactcttgccatagcgacat 378
              || || |||  |||||||||||| ||||
Sbjct: 164419 atatccgaaggtcttgccatagcaacat 164446
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>gb|AY107386.1| Zea mays PCO077290 mRNA sequence
          Length = 509

 Score =  123 bits (62), Expect = 8e-25
 Identities = 125/146 (85%)
 Strand = Plus / Minus

                                                                       
Query: 294 cgctcaataaattcggcagcgatgtcacggccttcaaaggatgcaaggacaggtctgatg 353
           ||||||||||| |||||||| || ||||  | || | |||||||||| ||||  ||||||
Sbjct: 164 cgctcaataaactcggcagcaatatcaccactttgataggatgcaagaacagccctgatg 105

                                                                       
Query: 354 tcagaaactcttgccatagcgacatattcaagcaatggaataagatcaatcagttgagtg 413
           ||||||  |||||||||||| |||||||| || |||||||||||||||| ||||||||||
Sbjct: 104 tcagaaggtcttgccatagcaacatattctagaaatggaataagatcaagcagttgagtg 45

                                     
Query: 414 tcctcggcttcaagcttccaaggttt 439
           || ||   ||||||||||||||||||
Sbjct: 44  tcatcattttcaagcttccaaggttt 19
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>ref|XM_475705.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1224

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 109/131 (83%)
 Strand = Plus / Minus

                                                                       
Query: 422 ttcaagcttccaaggtttgatcggcaaacaattttcaggctgcaggcatgactcaagagc 481
           |||||| ||||||||||||||  | | ||||||||| ||||| | ||| || ||||||||
Sbjct: 909 ttcaagtttccaaggtttgatttgaacacaattttctggctgtaagcaagattcaagagc 850

                                                                       
Query: 482 atgcccactgatataaataactcgtgcagggtctctgttcagctttgacaaatcccgata 541
            || |  ||||| ||||||||| ||||||| | ||| |||| ||||||||||||||||||
Sbjct: 849 gtggctgctgatgtaaataacttgtgcaggatttctattcaactttgacaaatcccgata 790

                      
Query: 542 gtgttttccat 552
            ||||| ||||
Sbjct: 789 atgtttaccat 779



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 621 acaggatcaacatacatacttaattgatcagaatacacaacaacttcata 670
           ||||||||||||||||||   |  ||||||||||||||||||||||||||
Sbjct: 710 acaggatcaacatacataggcatctgatcagaatacacaacaacttcata 661
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>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07,
              complete sequence
          Length = 146712

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                          
Query: 422    ttcaagcttccaaggtttgatcggcaaacaattttcaggctgcaggcatgactcaagagc 481
              |||||| ||||||||||||||  | | ||||||||| ||||| | ||| || ||||||||
Sbjct: 113157 ttcaagtttccaaggtttgatttgaacacaattttctggctgtaagcaagattcaagagc 113098

                                                                     
Query: 482    atgcccactgatataaataactcgtgcagggtctctgttcagctttgacaaatcc 536
               || |  ||||| ||||||||| ||||||| | ||| |||| |||||||||||||
Sbjct: 113097 gtggctgctgatgtaaataacttgtgcaggatttctattcaactttgacaaatcc 113043



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 645    tgatcagaatacacaacaacttcata 670
              ||||||||||||||||||||||||||
Sbjct: 112183 tgatcagaatacacaacaacttcata 112158
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                            
Query: 422      ttcaagcttccaaggtttgatcggcaaacaattttcaggctgcaggcatgactcaagagc 481
                |||||| ||||||||||||||  | | ||||||||| ||||| | ||| || ||||||||
Sbjct: 25250316 ttcaagtttccaaggtttgatttgaacacaattttctggctgtaagcaagattcaagagc 25250257

                                                                       
Query: 482      atgcccactgatataaataactcgtgcagggtctctgttcagctttgacaaatcc 536
                 || |  ||||| ||||||||| ||||||| | ||| |||| |||||||||||||
Sbjct: 25250256 gtggctgctgatgtaaataacttgtgcaggatttctattcaactttgacaaatcc 25250202



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 645      tgatcagaatacacaacaacttcata 670
                ||||||||||||||||||||||||||
Sbjct: 25249342 tgatcagaatacacaacaacttcata 25249317
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>ref|NM_104467.4| Arabidopsis thaliana TIM50 AT1G55900 (TIM50) mRNA, complete cds
          Length = 1534

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 513 tctctgttcagctttgacaaatcccgatagtgttttccatgcacatatttagt 565
           ||||||||||||||||||| ||||| |||||| |||||||   ||||||||||
Sbjct: 943 tctctgttcagctttgacagatccctatagtgctttccattttcatatttagt 891
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>gb|AY122975.1| Arabidopsis thaliana unknown protein (At1g55900) mRNA, complete cds
          Length = 1162

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 513 tctctgttcagctttgacaaatcccgatagtgttttccatgcacatatttagt 565
           ||||||||||||||||||| ||||| |||||| |||||||   ||||||||||
Sbjct: 848 tctctgttcagctttgacagatccctatagtgctttccattttcatatttagt 796
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>gb|AY072140.1| Arabidopsis thaliana unknown protein (At1g55900) mRNA, complete cds
          Length = 1496

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 513 tctctgttcagctttgacaaatcccgatagtgttttccatgcacatatttagt 565
           ||||||||||||||||||| ||||| |||||| |||||||   ||||||||||
Sbjct: 942 tctctgttcagctttgacagatccctatagtgctttccattttcatatttagt 890
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>dbj|AK221878.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-17-J22
          Length = 699

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 513 tctctgttcagctttgacaaatcccgatagtgttttccatgcacatatttagt 565
           ||||||||||||||||||| ||||| |||||| |||||||   ||||||||||
Sbjct: 154 tctctgttcagctttgacagatccctatagtgctttccattttcatatttagt 102
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>emb|BX815907.1|CNS0ABUR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH16ZD01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1510

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 513 tctctgttcagctttgacaaatcccgatagtgttttccatgcacatatttagt 565
           ||||||||||||||||||| ||||| |||||| |||||||   ||||||||||
Sbjct: 919 tctctgttcagctttgacagatccctatagtgctttccattttcatatttagt 867
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>ref|XM_463449.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 165

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                       
Query: 291 gaacgctcaataaattcggcagcgatgtcacggccttcaaaggatgcaaggacaggtctg 350
           |||||||||||||| || ||||  || |||||||||| | |||| ||||| ||||  |||
Sbjct: 146 gaacgctcaataaactcagcaggtatatcacggccttgataggacgcaagaacagccctg 87

                                       
Query: 351 atgtcagaaactcttgccatagcgacat 378
           || || |||  |||||||||||| ||||
Sbjct: 86  atatccgaaggtcttgccatagcaacat 59
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>gb|AC145798.2| Xenopus tropicalis clone CH216-53L7, complete sequence
          Length = 156486

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 513    tctctgttcagctttgacaaa 533
              |||||||||||||||||||||
Sbjct: 118423 tctctgttcagctttgacaaa 118403
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 235    ataatcatcgccgccaaatgc 255
              |||||||||||||||||||||
Sbjct: 826682 ataatcatcgccgccaaatgc 826662
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>gb|AC013701.6| Homo sapiens, clone RP11-22C8, complete sequence
          Length = 160275

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 508   cagggtctctgttcagctttgacaa 532
             ||||||||||||||||| |||||||
Sbjct: 86823 cagggtctctgttcagcattgacaa 86847
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>emb|BX324224.11| Zebrafish DNA sequence from clone CH211-168H21 in linkage group 13,
             complete sequence
          Length = 147168

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 137   agtctggcaaaattacaaaga 157
             |||||||||||||||||||||
Sbjct: 99430 agtctggcaaaattacaaaga 99410
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>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1294_F06
          Length = 121088

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   attacaaagacaagtcttaca 168
             |||||||||||||||||||||
Sbjct: 59418 attacaaagacaagtcttaca 59398
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>dbj|AK073433.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042P17, full
            insert sequence
          Length = 1504

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 148  attacaaagacaagtcttaca 168
            |||||||||||||||||||||
Sbjct: 1449 attacaaagacaagtcttaca 1429
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>ref|XM_636840.1| Dictyostelium discoideum hypothetical protein (DDB0215314), partial
            mRNA
          Length = 2886

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  tgttgttgtttttgttcatg 280
            ||||||||||||||||||||
Sbjct: 2147 tgttgttgtttttgttcatg 2128
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>gb|AC111103.7| Mus musculus chromosome 16, clone RP23-187G7, complete sequence
          Length = 222348

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 591    acacagccttttgcatccag 610
              ||||||||||||||||||||
Sbjct: 202376 acacagccttttgcatccag 202357
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>emb|AL161901.18| Human DNA sequence from clone RP11-521H3 on chromosome 13 Contains a
             novel gene and a eukaryotic translation initiation factor
             4A, variant 1 (EIF4A1) pseudogene, complete sequence
          Length = 150054

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    tatagcttggtcagacatta 70
             ||||||||||||||||||||
Sbjct: 14922 tatagcttggtcagacatta 14941
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>gb|BC041832.1| Homo sapiens cDNA clone IMAGE:5268251
          Length = 3476

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  tatagcttggtcagacatta 70
           ||||||||||||||||||||
Sbjct: 453 tatagcttggtcagacatta 434
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>gb|AC078963.16| Homo sapiens 12q BAC RP11-362K2 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 123253

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 525   tttgacaaatcccgatagtgttttccat 552
             ||||||||||||| ||| ||||||||||
Sbjct: 21913 tttgacaaatccccatactgttttccat 21886
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>emb|BX908736.10| Zebrafish DNA sequence from clone CH211-229C8 in linkage group 18,
            complete sequence
          Length = 159047

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 257  tccatgttgttgtttttgtt 276
            ||||||||||||||||||||
Sbjct: 5063 tccatgttgttgtttttgtt 5044
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>gb|AC156552.10| Mus musculus chromosome 3, clone RP24-271K21, complete sequence
          Length = 168716

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    tacaaagacaagtcttacag 169
              ||||||||||||||||||||
Sbjct: 101107 tacaaagacaagtcttacag 101126
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 382     caagcaatggaataagatca 401
               ||||||||||||||||||||
Sbjct: 2532059 caagcaatggaataagatca 2532078
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>gb|AC002304.3|AC002304 Genomic sequence for Arabidopsis thaliana BAC F14J16 from chromosome I,
             complete sequence
          Length = 106320

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 513   tctctgttcagctttgacaaatcc 536
             ||||||||||||||||||| ||||
Sbjct: 53544 tctctgttcagctttgacagatcc 53521
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>gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complete sequence
          Length = 211512

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 458    aggctgcaggcatgactcaa 477
              ||||||||||||||||||||
Sbjct: 144466 aggctgcaggcatgactcaa 144485
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>gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, complete sequence
          Length = 144031

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 629   aacatacatacttaattgat 648
             ||||||||||||||||||||
Sbjct: 58419 aacatacatacttaattgat 58400
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>dbj|AP000924.7| Homo sapiens genomic DNA, chromosome 11 clone:RP11-758F15, complete
              sequence
          Length = 172274

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    tggcaaaattacaaagacaa 160
              ||||||||||||||||||||
Sbjct: 116368 tggcaaaattacaaagacaa 116387
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>dbj|AP001883.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-140O23, complete
            sequence
          Length = 143621

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  tggcaaaattacaaagacaa 160
            ||||||||||||||||||||
Sbjct: 4791 tggcaaaattacaaagacaa 4810
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 382     caagcaatggaataagatca 401
               ||||||||||||||||||||
Sbjct: 2532003 caagcaatggaataagatca 2532022
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>emb|AL929350.3|CNS08CCE Oryza sativa chromosome 12, . BAC OSJNBb0104J15 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 136490

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    caagcaatggaataagatca 401
              ||||||||||||||||||||
Sbjct: 135950 caagcaatggaataagatca 135931
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>emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb0050K10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 122901

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   caagcaatggaataagatca 401
             ||||||||||||||||||||
Sbjct: 11433 caagcaatggaataagatca 11414
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>gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, complete sequence
          Length = 213473

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    aggctgcaggcatgactcaa 477
              ||||||||||||||||||||
Sbjct: 190620 aggctgcaggcatgactcaa 190601
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>emb|CT030649.7| Mouse DNA sequence from clone RP24-354G13 on chromosome 16, complete
             sequence
          Length = 140452

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 591   acacagccttttgcatccag 610
             ||||||||||||||||||||
Sbjct: 98259 acacagccttttgcatccag 98278
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>dbj|AB030754.1| Mus musculus prkdc gene for DNA-dependent protein kinase catalytic
             subunit, complete cds
          Length = 193650

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 591   acacagccttttgcatccag 610
             ||||||||||||||||||||
Sbjct: 86697 acacagccttttgcatccag 86678


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,685,681
Number of Sequences: 3902068
Number of extensions: 6685681
Number of successful extensions: 142599
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142237
Number of HSP's gapped (non-prelim): 361
length of query: 689
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 666
effective length of database: 17,143,297,704
effective search space: 11417436270864
effective search space used: 11417436270864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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