Clone Name | rbags9n24 |
---|---|
Clone Library Name | barley_pub |
>emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-protein alpha subunit Length = 1834 Score = 880 bits (444), Expect = 0.0 Identities = 560/595 (94%), Gaps = 14/595 (2%) Strand = Plus / Minus Query: 60 ttcagatcaggcgaggaaggttacctttcgattcgcaaaaatggcaatcctactct---- 115 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1801 ttcagatcaggcgaggaaggttaccgttcgattcgcaaaaatggcaatcctactcttact 1742 Query: 116 --agacctttttcactttcaattgatctcaaccaaaattctactgcttggcctgaactga 173 |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct: 1741 ctagaccttt--cactttcagttgatctcaaccgaaattctactgcttggcctgaactga 1684 Query: 174 agcatctaaaaaacacggacgaggcctgaagag--ctttacag---gctcgatcagacgg 228 |||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||| Sbjct: 1683 ggcatctaaaaaa-acggaggaggcctgaagagagctttacatacagctcgatcagacgg 1625 Query: 229 agagctgcccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacga 288 |||||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||| Sbjct: 1624 agagctgcccctccgctggctcggcgaccttgggcttgggcttgggcttctcgacgacga 1565 Query: 289 tcgcttgcgtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcg 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 tcgcttgcgtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcg 1505 Query: 349 tcaccttggcggggtcgatgacacccgactcgatcaggttctcgtacttgtctgtcatcg 408 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | Sbjct: 1504 tcaccttggcggggtcgatgacgcccgactcgatcaggttctcgtacttgtcggtcattg 1445 Query: 409 cgttgtaacccatctcccactcgctatccttgatcttctcgatcacaacttccccttcca 468 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 1444 cgttgtaacccatctcccactcgctctccttgatcttctcgatcacaacctccccttcca 1385 Query: 469 ctccagcgttgttggcgatcagcgatgccggtgcttgcaatgccttctgaatgatgtcag 528 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1384 ctccggcgttgttggcgatcagcgatgccggtgcttgcaatgccttctgaatgatgtcag 1325 Query: 529 caccaaggcgctcgtcgtggtcttcaattgtttctttgatcgcagggacataggtagata 588 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 1324 caccaaggcgctcgtcgtggtcttcgattgtttctttgatcgcagggacataggtagaca 1265 Query: 589 ggtgcacatatgccgcaccaccaccgggaacaatgccctcctcgatggcagcgaa 643 |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 1264 ggtgcacatacgccgcgccaccaccgggaacaatgccctcctcgatggctgcgaa 1210
>dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K17, full insert sequence Length = 2070 Score = 262 bits (132), Expect = 1e-66 Identities = 312/372 (83%) Strand = Plus / Minus Query: 260 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 319 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1785 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1726 Query: 320 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 379 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 1725 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1666 Query: 380 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 439 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 1665 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1606 Query: 440 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccgg 499 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| || || || Sbjct: 1605 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 1546 Query: 500 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 559 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 1545 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 1486 Query: 560 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 619 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 1485 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 1426 Query: 620 aatgccctcctc 631 |||||||||||| Sbjct: 1425 aatgccctcctc 1414
>dbj|AK119223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D06, full insert sequence Length = 1119 Score = 262 bits (132), Expect = 1e-66 Identities = 312/372 (83%) Strand = Plus / Minus Query: 260 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 319 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 854 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 795 Query: 320 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 379 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 794 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 735 Query: 380 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 439 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 734 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 675 Query: 440 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccgg 499 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| || || || Sbjct: 674 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 615 Query: 500 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 559 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 614 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 555 Query: 560 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 619 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 554 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 495 Query: 620 aatgccctcctc 631 |||||||||||| Sbjct: 494 aatgccctcctc 483
>dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D12, full insert sequence Length = 1985 Score = 262 bits (132), Expect = 1e-66 Identities = 312/372 (83%) Strand = Plus / Minus Query: 260 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 319 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1783 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1724 Query: 320 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 379 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 1723 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1664 Query: 380 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 439 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 1663 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1604 Query: 440 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccgg 499 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| || || || Sbjct: 1603 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 1544 Query: 500 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 559 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 1543 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 1484 Query: 560 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 619 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 1483 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 1424 Query: 620 aatgccctcctc 631 |||||||||||| Sbjct: 1423 aatgccctcctc 1412
>dbj|AK061410.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B08, full insert sequence Length = 1087 Score = 262 bits (132), Expect = 1e-66 Identities = 312/372 (83%) Strand = Plus / Minus Query: 260 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 319 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 802 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 743 Query: 320 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 379 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 742 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 683 Query: 380 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 439 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 682 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 623 Query: 440 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccgg 499 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| || || || Sbjct: 622 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 563 Query: 500 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 559 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 562 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 503 Query: 560 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 619 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 502 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 443 Query: 620 aatgccctcctc 631 |||||||||||| Sbjct: 442 aatgccctcctc 431
>emb|AJ234407.1|HVU234407 Hordeum vulgare partial mRNA; clone cMWG0655 Length = 247 Score = 256 bits (129), Expect = 8e-65 Identities = 137/142 (96%) Strand = Plus / Plus Query: 502 cttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgttt 561 |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 1 cttgcaatgccttctgaatgatgtcagcaccaagnvgctcgbcgtggtcttcaattgttt 60 Query: 562 ctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaa 621 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctttgatcgmaggaacataggtagataggtgcacatatgccgcaccaccaccgggaacaa 120 Query: 622 tgccctcctcgatggcagcgaa 643 |||||||||||||||||||||| Sbjct: 121 tgccctcctcgatggcagcgaa 142
>dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E10, full insert sequence Length = 1543 Score = 254 bits (128), Expect = 3e-64 Identities = 311/372 (83%) Strand = Plus / Minus Query: 260 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 319 |||||| | ||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 1312 agccttggacttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 1253 Query: 320 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 379 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 1252 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 1193 Query: 380 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 439 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 1192 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 1133 Query: 440 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccgg 499 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| || || || Sbjct: 1132 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcagtgaagcggg 1073 Query: 500 tgcttgcaatgccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgt 559 ||| ||| ||||| ||||| ||||| |||||||||||||| || |||||||| ||||| Sbjct: 1072 agctaccaacgccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgt 1013 Query: 560 ttctttgatcgcagggacataggtagataggtgcacatatgccgcaccaccaccgggaac 619 |||||||||||||||||| || || || |||||||| || | |||||| || ||||| Sbjct: 1012 ttctttgatcgcagggacggtagttgaaagatgcacatacgctgtaccacctccaggaac 953 Query: 620 aatgccctcctc 631 |||||||||||| Sbjct: 952 aatgccctcctc 941
>gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence Length = 2106 Score = 254 bits (128), Expect = 3e-64 Identities = 330/396 (83%), Gaps = 1/396 (0%) Strand = Plus / Minus Query: 237 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 296 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1812 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1753 Query: 297 gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtcaccttg 356 ||||| ||||||||||| | || ||||| || ||||||||||| || || ||||||||| Sbjct: 1752 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 1693 Query: 357 gcggggtcgatgacacccgactcgatcaggttctcgtacttgtctgtcatcgcgttgtaa 416 || |||||||| ||||| | ||| |||||||||||||||||||| ||||| || ||||| Sbjct: 1692 gcagggtcgatcacaccagcctccatcaggttctcgtacttgtcagtcattgcattgtag 1633 Query: 417 cccatctcccactcgctatccttgatcttctcgatcacaacttc-cccttccactccagc 475 |||| |||||| ||||| |||||||||||||||| || ||||| |||||| |||||||| Sbjct: 1632 cccacctcccaatcgctctccttgatcttctcgacaaccacttcacccttctactccagc 1573 Query: 476 gttgttggcgatcagcgatgccggtgcttgcaatgccttctgaatgatgtcagcaccaag 535 |||| || |||| || || |||||| ||||||||| ||||| || ||||| ||||| Sbjct: 1572 attgtgtgcaatcaatgaagcaggtgctaccaatgccttttgaataatatcagcgccaag 1513 Query: 536 gcgctcgtcgtggtcttcaattgtttctttgatcgcagggacataggtagataggtgcac 595 ||||| || |||| ||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 1512 acgctcatcagggtcctcaattgcttctttgatcttagggacaaccgtagataggtgcac 1453 Query: 596 atatgccgcaccaccaccgggaacaatgccctcctc 631 ||||||||||||||| || ||||||||||||||||| Sbjct: 1452 atatgccgcaccacctcctggaacaatgccctcctc 1417
>gb|AY108518.1| Zea mays PCO123570 mRNA sequence Length = 1387 Score = 238 bits (120), Expect = 2e-59 Identities = 328/396 (82%), Gaps = 1/396 (0%) Strand = Plus / Minus Query: 237 ccctccgctggctccgcgaccttagccttcggcttgggcttctcgacgacgatcgcttgc 296 ||||||| |||||| || || | || ||||||||| |||||||| || || || || ||| Sbjct: 1071 ccctccggtggctctgccacttgaggcttcggctttggcttctcaacaacaatggcctgc 1012 Query: 297 gtggtgaggaccattccggacaccgaggcggcgttctggagcgcgcatctcgtcaccttg 356 ||||| ||||||||||| | || ||||| || ||||||||||| || || ||||||||| Sbjct: 1011 gtggttaggaccattccagctactgaggccgcattctggagcgcacacctggtcaccttg 952 Query: 357 gcggggtcgatgacacccgactcgatcaggttctcgtacttgtctgtcatcgcgttgtaa 416 || |||||||| ||||| | ||| |||||||||||||||||||| ||||| || ||||| Sbjct: 951 gcagggtcgatcacaccagcctccatcaggttctcgtacttgtcagtcattgcattgtag 892 Query: 417 cccatctcccactcgctat-ccttgatcttctcgatcacaacttccccttccactccagc 475 |||| |||||| ||||| | ||||||||||||||| || ||||| || || |||||||| Sbjct: 891 cccacctcccaatcgctctgccttgatcttctcgacaaccacttcaccctctactccagc 832 Query: 476 gttgttggcgatcagcgatgccggtgcttgcaatgccttctgaatgatgtcagcaccaag 535 |||| || |||| || || |||||| ||||||||| ||||| || ||||| ||||| Sbjct: 831 attgtgtgcaatcaatgaagcaggtgctaccaatgccttttgaataatatcagcgccaag 772 Query: 536 gcgctcgtcgtggtcttcaattgtttctttgatcgcagggacataggtagataggtgcac 595 ||||| || |||| ||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 771 ccgctcatcagggtcctcaattgcttctttgatcttagggacaaccgtagataggtgcac 712 Query: 596 atatgccgcaccaccaccgggaacaatgccctcctc 631 ||||||||||||||| || ||||||||||||||||| Sbjct: 711 atatgccgcaccacctcctggaacaatgccctcctc 676
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 180 bits (91), Expect = 4e-42 Identities = 196/231 (84%) Strand = Plus / Minus Query: 260 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 319 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296639 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296580 Query: 320 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 379 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 10296579 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 10296520 Query: 380 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 439 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 10296519 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 10296460 Query: 440 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcag 490 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| Sbjct: 10296459 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcag 10296409 Score = 97.6 bits (49), Expect = 4e-17 Identities = 103/121 (85%) Strand = Plus / Minus Query: 511 ccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgtttctttgatcg 570 |||| ||||| ||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 10296118 ccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgtttctttgatcg 10296059 Query: 571 cagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaatgccctcct 630 ||||||| || || || |||||||| || | |||||| || |||||||||||||||| Sbjct: 10296058 cagggacggtagttgaaagatgcacatacgctgtaccacctccaggaacaatgccctcct 10295999 Query: 631 c 631 | Sbjct: 10295998 c 10295998
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 180 bits (91), Expect = 4e-42 Identities = 196/231 (84%) Strand = Plus / Minus Query: 260 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 319 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 10296521 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 10296462 Query: 320 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 379 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 10296461 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 10296402 Query: 380 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 439 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 10296401 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 10296342 Query: 440 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcag 490 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| Sbjct: 10296341 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcag 10296291 Score = 97.6 bits (49), Expect = 4e-17 Identities = 103/121 (85%) Strand = Plus / Minus Query: 511 ccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgtttctttgatcg 570 |||| ||||| ||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 10296000 ccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgtttctttgatcg 10295941 Query: 571 cagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaatgccctcct 630 ||||||| || || || |||||||| || | |||||| || |||||||||||||||| Sbjct: 10295940 cagggacggtagttgaaagatgcacatacgctgtaccacctccaggaacaatgccctcct 10295881 Query: 631 c 631 | Sbjct: 10295880 c 10295880
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 180 bits (91), Expect = 4e-42 Identities = 196/231 (84%) Strand = Plus / Minus Query: 260 agccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacac 319 |||||| ||||| ||||||||||| || || || || ||||| ||||||||||| | ||| Sbjct: 59558 agccttgggcttcggcttctcgacaacaatggcctgtgtggtaaggaccattccagccac 59499 Query: 320 cgaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactc 379 ||||||||| |||||||||||||||||||||||||| || ||||| || ||||||| ||| Sbjct: 59498 cgaggcggcattctggagcgcgcatctcgtcaccttagctgggtcaataacacccgcctc 59439 Query: 380 gatcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatcctt 439 |||| |||||| |||||||| ||||||| ||||| || | |||||||||| ||||| Sbjct: 59438 aatcaagttctcatacttgtcgttcatcgcattgtacccgacttcccactcgccgtcctt 59379 Query: 440 gatcttctcgatcacaacttccccttccactccagcgttgttggcgatcag 490 ||||||||| | || |||||||||||||||||||| |||| ||| ||||| Sbjct: 59378 gatcttctcaactaccacttccccttccactccagcattgtgggcaatcag 59328 Score = 97.6 bits (49), Expect = 4e-17 Identities = 103/121 (85%) Strand = Plus / Minus Query: 511 ccttctgaatgatgtcagcaccaaggcgctcgtcgtggtcttcaattgtttctttgatcg 570 |||| ||||| ||||| |||||||||||||| || |||||||| |||||||||||||||| Sbjct: 59037 ccttttgaataatgtctgcaccaaggcgctcatcatggtcttcgattgtttctttgatcg 58978 Query: 571 cagggacataggtagataggtgcacatatgccgcaccaccaccgggaacaatgccctcct 630 ||||||| || || || |||||||| || | |||||| || |||||||||||||||| Sbjct: 58977 cagggacggtagttgaaagatgcacatacgctgtaccacctccaggaacaatgccctcct 58918 Query: 631 c 631 | Sbjct: 58917 c 58917
>gb|AY108560.1| Zea mays PCO140434 mRNA sequence Length = 2143 Score = 121 bits (61), Expect = 3e-24 Identities = 220/273 (80%) Strand = Plus / Minus Query: 269 cttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggc 328 |||||||||||| || ||||| ||||| || || || |||||||| | ||| ||||| || Sbjct: 1849 cttgggcttctccacaacgattgcttgggtagtcagcaccattccagccacggaggcagc 1790 Query: 329 gttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggtt 388 |||||| || ||||| || ||||| ||||| |||||||| ||||| | ||| | |||||| Sbjct: 1789 gttctgcagggcgcacctagtcactttggcagggtcgatcacaccagcctccaccaggtt 1730 Query: 389 ctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctc 448 ||||| |||||| | ||| ||||||||||| | |||||||||||| ||| ||| || || Sbjct: 1729 ctcgtgcttgtccgccatggcgttgtaaccgaactcccactcgctttcccggattttatc 1670 Query: 449 gatcacaacttccccttccactccagcgttgttggcgatcagcgatgccggtgcttgcaa 508 | | || || |||||||| ||||| || | ||| ||||||| ||| ||||| ||| Sbjct: 1669 cacaatcacctcaccttccaccccagcattatgggctatcagcgctgcaggtgccaccaa 1610 Query: 509 tgccttctgaatgatgtcagcaccaaggcgctc 541 |||||||||||||| |||||||| |||||||| Sbjct: 1609 agccttctgaatgatatcagcacctaggcgctc 1577
>ref|XM_470503.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1998 Score = 81.8 bits (41), Expect = 3e-12 Identities = 212/269 (78%) Strand = Plus / Minus Query: 273 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 332 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 1777 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 1718 Query: 333 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 392 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 1717 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 1658 Query: 393 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 452 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 1657 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 1598 Query: 453 acaacttccccttccactccagcgttgttggcgatcagcgatgccggtgcttgcaatgcc 512 | ||||||||||| |||||||| |||| || || || | ||||||||| | ||| Sbjct: 1597 atcacttccccttcaactccagcattgtgtgctattagtgctgccggtgccactagagcc 1538 Query: 513 ttctgaatgatgtcagcaccaaggcgctc 541 || |||||||| ||||||||||||||||| Sbjct: 1537 ttttgaatgatatcagcaccaaggcgctc 1509
>dbj|AK061901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H05, full insert sequence Length = 1107 Score = 81.8 bits (41), Expect = 3e-12 Identities = 212/269 (78%) Strand = Plus / Minus Query: 273 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 332 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 886 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 827 Query: 333 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 392 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 826 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 767 Query: 393 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 452 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 766 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 707 Query: 453 acaacttccccttccactccagcgttgttggcgatcagcgatgccggtgcttgcaatgcc 512 | ||||||||||| |||||||| |||| || || || | ||||||||| | ||| Sbjct: 706 atcacttccccttcaactccagcattgtgtgctattagtgctgccggtgccactagagcc 647 Query: 513 ttctgaatgatgtcagcaccaaggcgctc 541 || |||||||| ||||||||||||||||| Sbjct: 646 ttttgaatgatatcagcaccaaggcgctc 618
>gb|BT014158.1| Lycopersicon esculentum clone 133278F, mRNA sequence Length = 2098 Score = 79.8 bits (40), Expect = 1e-11 Identities = 211/268 (78%) Strand = Plus / Minus Query: 262 ccttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccg 321 |||| ||||| ||||||||||| || || ||||| ||||| || |||||||| || || | Sbjct: 1795 ccttaggctttggcttctcgaccactatggcttgtgtggtcagcaccattcctgaaactg 1736 Query: 322 aggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcga 381 | || | ||||| | || ||||| ||||||||||| || |||||||| || | || | Sbjct: 1735 atgctgaattctgcaaggcacatcttgtcaccttggctggatcgatgactccagcttcca 1676 Query: 382 tcaggttctcgtacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttga 441 || |||||||| | ||||||||||||||| |||||||||||||| ||| ||||| | Sbjct: 1675 cgagattctcgtattggtctgtcatcgcgttataacccatctcccattcggcttccttca 1616 Query: 442 tcttctcgatcacaacttccccttccactccagcgttgttggcgatcagcgatgccggtg 501 |||||| | || ||||| ||||| ||||| || || | ||| |||| ||||| || | Sbjct: 1615 ccttctccacgactacttctccttcaactccggcattttgggctatcaaagatgctgggg 1556 Query: 502 cttgcaatgccttctgaatgatgtcagc 529 || ||||||||| |||||||||||||| Sbjct: 1555 ctaccaatgccttttgaatgatgtcagc 1528
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 165/208 (79%) Strand = Plus / Plus Query: 273 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 332 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 35977733 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 35977792 Query: 333 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 392 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 35977793 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 35977852 Query: 393 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 452 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 35977853 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 35977912 Query: 453 acaacttccccttccactccagcgttgt 480 | ||||||||||| |||||||| |||| Sbjct: 35977913 atcacttccccttcaactccagcattgt 35977940 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 511 ccttctgaatgatgtcagcaccaaggcgctc 541 |||| |||||||| ||||||||||||||||| Sbjct: 35978185 ccttttgaatgatatcagcaccaaggcgctc 35978215
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 71.9 bits (36), Expect = 2e-09 Identities = 165/208 (79%) Strand = Plus / Plus Query: 273 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 332 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 39244 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 39303 Query: 333 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 392 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 39304 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 39363 Query: 393 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 452 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 39364 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 39423 Query: 453 acaacttccccttccactccagcgttgt 480 | ||||||||||| |||||||| |||| Sbjct: 39424 atcacttccccttcaactccagcattgt 39451 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 511 ccttctgaatgatgtcagcaccaaggcgctc 541 |||| |||||||| ||||||||||||||||| Sbjct: 39696 ccttttgaatgatatcagcaccaaggcgctc 39726
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 2e-09 Identities = 165/208 (79%) Strand = Plus / Plus Query: 273 ggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccgaggcggcgttc 332 |||||||| || ||||| ||||||||||| || |||||||| | ||||||||| ||||| Sbjct: 36067807 ggcttctccacaacgatggcttgcgtggttagtaccattccagccaccgaggctgcgttt 36067866 Query: 333 tggagcgcgcatctcgtcaccttggcggggtcgatgacacccgactcgatcaggttctcg 392 || | ||| ||||| |||||||| || ||||| || ||||| | || | || ||||||| Sbjct: 36067867 tgcaacgcacatcttgtcacctttgcagggtcaatcacaccagcctgtaccaagttctcg 36067926 Query: 393 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 452 | |||| | |||||| ||||| || | |||||| || || ||||||||||| || | Sbjct: 36067927 tgtctgtcagccatcgcattgtagccaacctcccattcactctccttgatcttttctaca 36067986 Query: 453 acaacttccccttccactccagcgttgt 480 | ||||||||||| |||||||| |||| Sbjct: 36067987 atcacttccccttcaactccagcattgt 36068014 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 511 ccttctgaatgatgtcagcaccaaggcgctc 541 |||| |||||||| ||||||||||||||||| Sbjct: 36068259 ccttttgaatgatatcagcaccaaggcgctc 36068289
>gb|DQ295240.1| Uncultured marine bacterium Ant29B7, partial genomic sequence Length = 40351 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 604 caccaccaccgggaacaatgccctcctcgatggcagc 640 ||||||| ||||||||||| ||||||||||||||||| Sbjct: 26691 caccaccgccgggaacaataccctcctcgatggcagc 26655
>ref|XM_814415.1| Trypanosoma cruzi strain CL Brener chaperonin HSP60, mitochondrial precursor (Tc00.1047053507641.290) partial mRNA Length = 1680 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 604 caccaccaccgggaacaatgccctcct 630 ||||||||||||||||||||||||||| Sbjct: 1279 caccaccaccgggaacaatgccctcct 1253
>emb|X95971.1|SLGROEL2G S.lividans groEL2 gene Length = 2192 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 324 gcggcgttctggagcgcgcatctcgtcaccttggcggggtcga 366 |||||||||||||||||| | | |||||||||||| ||||||| Sbjct: 1992 gcggcgttctggagcgcggaacgcgtcaccttggccgggtcga 1950
>emb|X67473.1|TCHSP60 T.cruzi hsp60 gene Length = 2100 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 604 caccaccaccgggaacaatgccctcct 630 ||||||||||||||||||||||||||| Sbjct: 1686 caccaccaccgggaacaatgccctcct 1660
>gb|L08791.1|TRBHSP60A Trypanosoma cruzi heat shock protein 60 mRNA, complete cds and flanking regions Length = 2020 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 604 caccaccaccgggaacaatgccctcct 630 ||||||||||||||||||||||||||| Sbjct: 1424 caccaccaccgggaacaatgccctcct 1398
>gb|M76658.1|STMGROELY Streptomyces albus open reading frame (GROEL2) gene, complete cds Length = 1814 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 324 gcggcgttctggagcgcgcatctcgtcaccttggcggggtcga 366 |||||||||||||||||| | | |||||||||||| ||||||| Sbjct: 1614 gcggcgttctggagcgcggaacgcgtcaccttggccgggtcga 1572
>gb|AY389619.1| Hyacinthus orientalis chaperonin groEL mRNA, partial cds Length = 313 Score = 48.1 bits (24), Expect = 0.036 Identities = 51/60 (85%) Strand = Plus / Minus Query: 263 cttcggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccggacaccga 322 |||||||||||||||||| || || || ||||| || || ||||||||||| | |||||| Sbjct: 101 cttcggcttgggcttctccaccacaatggcttgtgttgttaggaccattccagccaccga 42
>gb|BT013144.1| Lycopersicon esculentum clone 134139R, mRNA sequence Length = 2052 Score = 46.1 bits (23), Expect = 0.14 Identities = 68/83 (81%) Strand = Plus / Minus Query: 393 tacttgtctgtcatcgcgttgtaacccatctcccactcgctatccttgatcttctcgatc 452 |||||||| ||||| || ||||||||||||| ||| | ||| |||| |||||||| | Sbjct: 1676 tacttgtcggtcattgcattgtaacccatcttccatttgctgccctttatcttctccact 1617 Query: 453 acaacttccccttccactccagc 475 || ||||||||||| || ||||| Sbjct: 1616 actacttccccttcaaccccagc 1594
>ref|XM_814413.1| Trypanosoma cruzi strain CL Brener chaperonin HSP60, mitochondrial precursor (Tc00.1047053507641.280) partial mRNA Length = 1683 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 604 caccaccaccgggaacaatgccctcct 630 ||||||||||||||||||| ||||||| Sbjct: 1273 caccaccaccgggaacaataccctcct 1247
>ref|XM_814417.1| Trypanosoma cruzi strain CL Brener chaperonin HSP60, mitochondrial precursor (Tc00.1047053507641.300) partial mRNA Length = 787 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 604 caccaccaccgggaacaatgccctcct 630 ||||||||||||||||||| ||||||| Sbjct: 377 caccaccaccgggaacaataccctcct 351
>ref|NM_128359.3| Arabidopsis thaliana CPN60A; ATP binding / protein binding AT2G28000 (CPN60A) mRNA, complete cds Length = 2103 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 603 gcaccaccaccgggaacaatgccctcctcgatggcagc 640 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 1519 gcaccaccacctggaactatgccttcctcgatagcagc 1482
>gb|BT008784.1| Arabidopsis thaliana At2g28000 gene, complete cds Length = 1761 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 603 gcaccaccaccgggaacaatgccctcctcgatggcagc 640 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 1382 gcaccaccacctggaactatgccttcctcgatagcagc 1345
>emb|Z27222.1|BNPLCAS B.napus mRNA for plastid chaperonin-60 alpha subunit Length = 1975 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 441 atcttctcgatcacaacttccccttccactccagcgtt 478 |||||||| | ||||||||||||||| | ||||||||| Sbjct: 1588 atcttctccaccacaacttccccttcgattccagcgtt 1551 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 606 ccaccaccgggaacaatgccctcctcgatggcagcgaa 643 |||||||||||||| || || |||||||| |||||||| Sbjct: 1426 ccaccaccgggaactattccttcctcgatagcagcgaa 1389
>emb|X95992.1|EGHSP60GN E.gracilis mRNA for heat shock protein 60 Length = 1946 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 603 gcaccaccaccgggaacaatgccctc 628 ||||||||||||||||| |||||||| Sbjct: 1297 gcaccaccaccgggaacgatgccctc 1272
>gb|AC006929.4| Arabidopsis thaliana chromosome 2 clone T1E2 map mi54, complete sequence Length = 94884 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Plus Query: 603 gcaccaccaccgggaacaatgccctcctcgatggcagc 640 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 32299 gcaccaccacctggaactatgccttcctcgatagcagc 32336
>dbj|AK222126.1| Arabidopsis thaliana mRNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: RAFL22-94-G01 Length = 1181 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 603 gcaccaccaccgggaacaatgccctcctcgatggcagc 640 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 623 gcaccaccacctggaactatgccttcctcgatagcagc 586
>dbj|AK222099.1| Arabidopsis thaliana mRNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: RAFL22-88-A01 Length = 645 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 603 gcaccaccaccgggaacaatgccctcctcgatggcagc 640 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 110 gcaccaccacctggaactatgccttcctcgatagcagc 73
>gb|U49357.1|ATU49357 Arabidopsis thaliana chaperonin-60 alpha subunit gene, nuclear gene encoding plastid protein, complete cds Length = 4365 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 603 gcaccaccaccgggaacaatgccctcctcgatggcagc 640 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 2774 gcaccaccacctggaactatgccttcctcgatagcagc 2737
>emb|BX819680.1|CNS0A9ZT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZF10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2019 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 603 gcaccaccaccgggaacaatgccctcctcgatggcagc 640 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 1448 gcaccaccacctggaactatgccttcctcgatagcagc 1411
>gb|AY086555.1| Arabidopsis thaliana clone 25773 mRNA, complete sequence Length = 1996 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 603 gcaccaccaccgggaacaatgccctcctcgatggcagc 640 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 1459 gcaccaccacctggaactatgccttcctcgatagcagc 1422
>gb|BT002441.1| Arabidopsis thaliana putative rubisco subunit binding-protein alpha subunit (At2g28000) mRNA, complete cds Length = 2020 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 603 gcaccaccaccgggaacaatgccctcctcgatggcagc 640 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 1464 gcaccaccacctggaactatgccttcctcgatagcagc 1427
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 350 caccttggcggggtcgatgacacccgact 378 |||||| || ||||||||||||||||||| Sbjct: 423825 caccttcgccgggtcgatgacacccgact 423853
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 ggcggcgttctggagcgcgca 343 ||||||||||||||||||||| Sbjct: 752794 ggcggcgttctggagcgcgca 752774
>gb|BT013632.1| Lycopersicon esculentum clone 132434F, mRNA sequence Length = 2127 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 604 caccaccaccgggaacaatgccctc 628 |||||||||| |||||||||||||| Sbjct: 1435 caccaccacctggaacaatgccctc 1411
>gb|AY545024.1| Burkholderia pseudomallei clone BPtf0037 putative AraC/XylS family transcription factor gene, complete cds Length = 984 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 ggcggcgttctggagcgcgca 343 ||||||||||||||||||||| Sbjct: 69 ggcggcgttctggagcgcgca 89
>ref|XM_721409.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05940) partial mRNA Length = 1401 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 gtatttttatttaaaaaatga 30 ||||||||||||||||||||| Sbjct: 1095 gtatttttatttaaaaaatga 1115
>ref|XM_675045.1| Plasmodium berghei strain ANKA Pb-fam-4 protein (PB000584.01.0) partial mRNA Length = 2739 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 gtatttttatttaaaaaatga 30 ||||||||||||||||||||| Sbjct: 1086 gtatttttatttaaaaaatga 1106
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome Length = 1512977 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 gtatttttatttaaaaaatga 30 ||||||||||||||||||||| Sbjct: 884045 gtatttttatttaaaaaatga 884025
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome Length = 1516355 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 gtatttttatttaaaaaatga 30 ||||||||||||||||||||| Sbjct: 904483 gtatttttatttaaaaaatga 904463
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 ggcggcgttctggagcgcgca 343 ||||||||||||||||||||| Sbjct: 2073040 ggcggcgttctggagcgcgca 2073020
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 606 ccaccaccgggaacaatgccctcctcgat 634 |||||||||||||||||||| || ||||| Sbjct: 29709 ccaccaccgggaacaatgccttcttcgat 29681
>emb|AL034556.4|PFMAL3P5 Plasmodium falciparum MAL3P5, complete sequence Length = 86826 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 gtatttttatttaaaaaatga 30 ||||||||||||||||||||| Sbjct: 80356 gtatttttatttaaaaaatga 80376
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 433 tatccttgatcttctcgatca 453 ||||||||||||||||||||| Sbjct: 69531 tatccttgatcttctcgatca 69511
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 acctttttcactttcaattga 138 ||||||||||||||||||||| Sbjct: 146204 acctttttcactttcaattga 146184
>gb|AC154255.2| Mus musculus BAC clone RP24-202K20 from chromosome 13, complete sequence Length = 159755 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 tatttttatttaaaaaatgac 31 ||||||||||||||||||||| Sbjct: 102598 tatttttatttaaaaaatgac 102618
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 ggcggcgttctggagcgcgca 343 ||||||||||||||||||||| Sbjct: 1647447 ggcggcgttctggagcgcgca 1647427
>dbj|AK047518.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930082I23 product:unclassifiable, full insert sequence Length = 3307 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 546 tggtcttcaattgtttctttg 566 ||||||||||||||||||||| Sbjct: 2488 tggtcttcaattgtttctttg 2508
>gb|U21105.1|PSU21105 Pisum sativum alphacpn60 precursor (alphacpn60) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1977 Score = 42.1 bits (21), Expect = 2.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 267 ggcttgggcttctcgacgacgatcgcttgcgtggtgaggaccattccgg 315 ||||||||||| ||||||||||| || || ||||| | |||||| |||| Sbjct: 1751 ggcttgggcttttcgacgacgatggcctgtgtggttaagaccatcccgg 1703
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 317 caccgaggcggcgttctggagcgcg 341 |||||| |||||||||||||||||| Sbjct: 2700886 caccgacgcggcgttctggagcgcg 2700910
>emb|CT025569.14| Mouse DNA sequence from clone RP24-68J22 on chromosome 13, complete sequence Length = 230723 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 tatttttatttaaaaaatgac 31 ||||||||||||||||||||| Sbjct: 4875 tatttttatttaaaaaatgac 4855
>gb|AC115740.8| Mus musculus chromosome 3, clone RP23-476G18, complete sequence Length = 226125 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 546 tggtcttcaattgtttctttg 566 ||||||||||||||||||||| Sbjct: 150239 tggtcttcaattgtttctttg 150259
>dbj|AB039274.1| Propionibacterium granulosum hsp60 gene for 60 kDa heat shock protein, partial cds Length = 1688 Score = 42.1 bits (21), Expect = 2.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 321 gaggcggcgttctggagcgcgcatctcgtcaccttggcggggtcgatga 369 |||| ||||||||| || ||| | | |||||||||||| |||||||||| Sbjct: 1606 gaggaggcgttctgcagggcggaacgcgtcaccttggccgggtcgatga 1558
>gb|AY780524.1| Ictalurus punctatus heat shock protein 60-like mRNA, partial sequence Length = 186 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 606 ccaccaccgggaacaatgccctcctcga 633 ||||| ||||||||||||||||| |||| Sbjct: 59 ccacctccgggaacaatgccctcttcga 32
>gb|AC137713.8| Mus musculus chromosome 15, clone RP24-468P6, complete sequence Length = 155341 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 agggacataggtagataggt 591 |||||||||||||||||||| Sbjct: 126402 agggacataggtagataggt 126383
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 atttttatttaaaaaatgac 31 |||||||||||||||||||| Sbjct: 2080997 atttttatttaaaaaatgac 2081016
>ref|XM_862656.1| PREDICTED: Canis familiaris similar to regulator of G-protein signalling 3 isoform 1, transcript variant 3 (LOC610879), mRNA Length = 1969 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tgaagatttctttgatccca 53 |||||||||||||||||||| Sbjct: 345 tgaagatttctttgatccca 364
>ref|XM_848562.1| PREDICTED: Canis familiaris similar to regulator of G-protein signalling 3 isoform 1, transcript variant 1 (LOC610879), mRNA Length = 1809 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tgaagatttctttgatccca 53 |||||||||||||||||||| Sbjct: 185 tgaagatttctttgatccca 204
>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence Length = 188132 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 cctgaactgaagcatctaaa 183 |||||||||||||||||||| Sbjct: 123998 cctgaactgaagcatctaaa 124017
>emb|AL596451.4| Human DNA sequence from clone RP11-75C9 on chromosome 9 Contains 2 novel genes, complete sequence Length = 130513 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tgaagatttctttgatccca 53 |||||||||||||||||||| Sbjct: 99386 tgaagatttctttgatccca 99405
>gb|AE014838.1| Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tatttttatttaaaaaatga 30 |||||||||||||||||||| Sbjct: 179355 tatttttatttaaaaaatga 179374
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 caccgaggcggcgttctgga 336 |||||||||||||||||||| Sbjct: 344526 caccgaggcggcgttctgga 344545
>gb|AC105337.7| Homo sapiens chromosome 17, clone CTD-2116F7, complete sequence Length = 126083 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 cttgcaatgccttctgaatg 521 |||||||||||||||||||| Sbjct: 9004 cttgcaatgccttctgaatg 9023
>gb|AC117395.5| Homo sapiens 3 BAC RP11-651P23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172715 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 atttttatttaaaaaatgac 31 |||||||||||||||||||| Sbjct: 96337 atttttatttaaaaaatgac 96356
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 cggcttgggcttctcgacga 285 |||||||||||||||||||| Sbjct: 2275572 cggcttgggcttctcgacga 2275553
>emb|BX649634.8| Zebrafish DNA sequence from clone CH211-284G18 in linkage group 2, complete sequence Length = 154030 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 gtatttttatttaaaaaatg 29 |||||||||||||||||||| Sbjct: 89401 gtatttttatttaaaaaatg 89382
>gb|AC079951.35| Homo sapiens 12q BAC RP11-346L11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191942 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ggtatttttatttaaaaaat 28 |||||||||||||||||||| Sbjct: 170493 ggtatttttatttaaaaaat 170474
>gb|AY688374.2| Lates calcarifer parvalbumin beta-1 gene, complete cds Length = 2749 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 ttctgaatgatgtcagcacc 532 |||||||||||||||||||| Sbjct: 1748 ttctgaatgatgtcagcacc 1767
>gb|AC074375.7| Homo sapiens BAC clone RP11-729M8 from 2, complete sequence Length = 106896 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tatttttatttaaaaaatga 30 |||||||||||||||||||| Sbjct: 71337 tatttttatttaaaaaatga 71356
>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131209 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 gtatttttatttaaaaaatg 29 |||||||||||||||||||| Sbjct: 81989 gtatttttatttaaaaaatg 82008
>gb|AC138405.6| Mus musculus chromosome 1, clone RP24-280N11, complete sequence Length = 151783 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ttagccttcggcttgggctt 277 |||||||||||||||||||| Sbjct: 147389 ttagccttcggcttgggctt 147408
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 caccttggcggggtcgatga 369 |||||||||||||||||||| Sbjct: 8267338 caccttggcggggtcgatga 8267319
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 351 accttggcggggtcgatgacaccc 374 |||||| ||||||||||||||||| Sbjct: 639066 accttgacggggtcgatgacaccc 639043
>emb|AJ338304.1|HSA338304 Homo sapiens genomic sequence surrounding NotI site, clone NR1-PA22RS Length = 717 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 545 gtggtcttcaattgtttctt 564 |||||||||||||||||||| Sbjct: 522 gtggtcttcaattgtttctt 541
>gb|AC147627.6| Mus musculus BAC clone RP24-382F19 from Y, complete sequence Length = 226237 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gaactgaagcatctaaaaaa 186 |||||||||||||||||||| Sbjct: 206536 gaactgaagcatctaaaaaa 206517
>gb|AF062920.1|AF062920 Thermus aquaticus DNA polymerase III (dnaE) gene, complete cds Length = 4526 Score = 40.1 bits (20), Expect = 8.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 321 gaggcggcgttctggagcgcgcatctcgtcaccttggcggggtc 364 |||||||||||||| || ||| | | ||||||||||||||||| Sbjct: 4104 gaggcggcgttctgcagggcggagcgggtcaccttggcggggtc 4147
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 cggcttgggcttctcgacga 285 |||||||||||||||||||| Sbjct: 2297918 cggcttgggcttctcgacga 2297899
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gcggcgttctggagcgcgca 343 |||||||||||||||||||| Sbjct: 995302 gcggcgttctggagcgcgca 995321
>dbj|AK112971.1| Ciona intestinalis cDNA, clone:cicl030b08, full insert sequence Length = 1163 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tttttatttaaaaaatgacg 32 |||||||||||||||||||| Sbjct: 12 tttttatttaaaaaatgacg 31
>gb|AC173476.2| Mus musculus BAC clone RP24-335D7 from chromosome 12, complete sequence Length = 182245 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gaactgaagcatctaaaaaa 186 |||||||||||||||||||| Sbjct: 115349 gaactgaagcatctaaaaaa 115330
>gb|U57000.1|TVU57000 Trichomonas vaginalis chaperonin 60 (cpn60) mRNA, partial cds Length = 1678 Score = 40.1 bits (20), Expect = 8.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 605 accaccaccgggaacaatgccctcctcgatggcagc 640 ||||||||| | ||| ||||| |||||||||||||| Sbjct: 1252 accaccaccagcaacgatgccttcctcgatggcagc 1217
>gb|L27472.1|CRECPN1B Chlamydomonas reinhardtii chaperonin alpha-like subunit, complete cds Length = 2420 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gtcaccttggcggggtcgat 367 |||||||||||||||||||| Sbjct: 1609 gtcaccttggcggggtcgat 1590
>emb|AL591762.13| Mouse DNA sequence from clone RP23-465I6 on chromosome 2, complete sequence Length = 137773 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 cttgcaatgccttctgaatg 521 |||||||||||||||||||| Sbjct: 109544 cttgcaatgccttctgaatg 109563 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,887,687 Number of Sequences: 3902068 Number of extensions: 5887687 Number of successful extensions: 143161 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 142130 Number of HSP's gapped (non-prelim): 1007 length of query: 643 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 620 effective length of database: 17,143,297,704 effective search space: 10628844576480 effective search space used: 10628844576480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)