ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9n21 |
|---|---|
| Clone Library Name | barley_pub |
>ALA3_ARATH (Q9XIE6) Putative phospholipid-transporting ATPase 3 (EC 3.6.3.1)| (Aminophospholipid flippase 3) Length = 1213 Score = 141 bits (356), Expect = 1e-33 Identities = 63/111 (56%), Positives = 85/111 (76%) Frame = -3 Query: 561 VIALFGDFLYLSLQRWLFPYDYQVVQEMHKDDPHEYSMIRLPERSHLSPEEARSYAISML 382 +++L GDF++ ++RW FPYDYQ+VQE+H+ + +L + L+P+EARSYAIS L Sbjct: 1103 IVSLLGDFIFQGVERWFFPYDYQIVQEIHRHESDASKADQLEVENELTPQEARSYAISQL 1162 Query: 381 XRENSKHTGFAFDSPGYESFFASQQGVCVPHKSWDVARRASMKQQRQQPQR 229 RE SKHTGFAFDSPGYESFFASQ G+ P K+WDVARRASM+ + + P++ Sbjct: 1163 PRELSKHTGFAFDSPGYESFFASQLGIYAPQKAWDVARRASMRSRPKVPKK 1213
>PZRN3_RAT (P68907) PDZ domain-containing RING finger protein 3 (Semaphorin| cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1062 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/67 (26%), Positives = 35/67 (52%) Frame = +3 Query: 354 NQCAWSSLGGAWKSRSFSLLQGSNGSSLEDVSYCIHGGHPCAFLEQLGSHKGIAIAEAID 533 ++C + GG +++S +L+ + SL + I GG PC + S +GI +++ +D Sbjct: 231 SRCVAAPPGGGEETKSLTLVLHRDSGSL---GFNIIGGRPCVDNQDGSSSEGIFVSKIVD 287 Query: 534 IGSHQRE 554 G +E Sbjct: 288 SGPAAKE 294
>ATCX_SCHPO (Q09891) Putative phospholipid-transporting ATPase 1 (EC 3.6.3.1)| Length = 1402 Score = 31.6 bits (70), Expect = 1.6 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = -3 Query: 561 VIALFGDFLYLSLQRWLFPYDYQVVQEMHKDDP-HEYSMIRLPERSHLSPEEARS 400 V LF FL+++ Q+ +PYD +++E ++ HE E + SP+ A S Sbjct: 1269 VSCLFPKFLFMTTQKLFWPYDVDIIRESYRTKRLHELDEEEEIENAEQSPDWASS 1323
>SYL_BACTN (Q8A329) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 944 Score = 31.2 bits (69), Expect = 2.1 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 2/107 (1%) Frame = -3 Query: 522 QRWLFPYDYQVVQEMHKDDPHEYSMIRLPERSHLSPEEARSYAISMLXRENSKHTGFAFD 343 QRW+ YQV ++ K + +M P + L Y S + + GF Sbjct: 14 QRWVEEKTYQVTEDESKQKFYVLNMFPYPSGAGLHVGHPLGYIASDIYARYKRLRGFNVL 73 Query: 342 SP-GYESF-FASQQGVCVPHKSWDVARRASMKQQRQQPQRTGRS*SW 208 +P GY+++ ++Q + + +A++ + R+Q + G S W Sbjct: 74 NPMGYDAYGLPAEQYAIQTGQHPAITTKANIDRYREQLDKIGFSFDW 120
>ALA10_ARATH (Q9LI83) Putative phospholipid-transporting ATPase 10 (EC 3.6.3.1)| (Aminophospholipid flippase 10) Length = 1202 Score = 30.0 bits (66), Expect = 4.7 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = -3 Query: 561 VIALFGDFLYLSLQRWLFPYDYQVVQ----EMHKDDPHEYSMIR 442 + AL F+Y S+Q FP +Q++Q E H +DP M+R Sbjct: 1123 IFALIPYFVYKSVQMRFFPKYHQMIQWIRYEGHSNDPEFVEMVR 1166
>PA2G3_HUMAN (Q9NZ20) Group 3 secretory phospholipase A2 precursor (EC 3.1.1.4)| (Group III secretory phospholipase A2) (Phosphatidylcholine 2-acylhydrolase GIII) (GIII sPLA2) Length = 509 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = -3 Query: 336 GYESFFASQ-QGVCVPHKSWDVARRASMKQQRQQPQRTGRS*SWICVKFCTSCSFAHRP 163 GY SF A QG+ + H WD RR +P+ T + +C SF H P Sbjct: 43 GYLSFLAKDAQGLALIHARWDAHRRLQACSWEDEPELTA-AYGALCAHETAWGSFIHTP 100
>YOSB_SCHPO (Q9P7L2) Protein C21C3.11 in chromosome II| Length = 425 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/53 (35%), Positives = 26/53 (49%) Frame = -3 Query: 492 VVQEMHKDDPHEYSMIRLPERSHLSPEEARSYAISMLXRENSKHTGFAFDSPG 334 +V E KDD E +R SHLSPEE+ S+ ++ E TG + G Sbjct: 358 IVHEFSKDDNIE--TLRAFVASHLSPEESTSFQLTFSNYEALPTTGLIVEHIG 408
>SYR_MYCGA (Q7NC67) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 551 Score = 29.3 bits (64), Expect = 8.0 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Frame = +2 Query: 65 RSMVTY*----HR*HNILGHWVTNKKKCYKATYTQSCGLWANEHDVQN 196 R+MV Y H HN+ + NK + T TQS W N H++ N Sbjct: 469 RTMVNYLASFEHYVHNVATTYEVNKLLNFVYTLTQSFHSWYNSHEILN 516
>EZ_DROME (P42124) Polycomb protein E(z) (Protein enhancer of zeste)| Length = 760 Score = 29.3 bits (64), Expect = 8.0 Identities = 20/102 (19%), Positives = 39/102 (38%) Frame = +3 Query: 171 GQTNMMYKTLHKSRIRIFLFVVXXXXXXSCWLSLRHPMTCEAHRHLAAMQKMTHNLGNQK 350 G +Y+ LHK ++ + + +C +A +++ +K Sbjct: 449 GADQALYRVLHKVYLKNYCAIAHNMLTKTCRQVYEFAQKEDAEFSFEDLRQDFTPPRKKK 508 Query: 351 QNQCAWSSLGGAWKSRSFSLLQGSNGSSLEDVSYCIHGGHPC 476 + Q WS R L + S+ + + + + C H GHPC Sbjct: 509 KKQRLWSL-----HCRKIQLKKDSSSNHVYNYTPCDHPGHPC 545
>PPCK_ASHGO (Q753M0) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)| Length = 541 Score = 26.2 bits (56), Expect(2) = 9.9 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 14/65 (21%) Frame = -1 Query: 401 ATRFPCSXERTPSTLVLL------LIP--------QVMSHFLHRSKVSVCLTSHGMSQGE 264 + + PC E PS +VLL ++P QVM HF+ + T G+++ E Sbjct: 339 SAQIPCLSENHPSNIVLLTCDASGVLPPVSRLTPEQVMYHFISGYTSKMAGTEQGVTEPE 398 Query: 263 PA*SS 249 SS Sbjct: 399 ATFSS 403 Score = 21.2 bits (43), Expect(2) = 9.9 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = -2 Query: 130 FLVCHPMTQYVMLAMLVGDH 71 FL HPM MLA + H Sbjct: 409 FLALHPMKYATMLAEKMSQH 428 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,923,924 Number of Sequences: 219361 Number of extensions: 1599242 Number of successful extensions: 4183 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4072 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4180 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
