ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9n17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 258 bits (130), Expect = 2e-65 Identities = 304/358 (84%), Gaps = 3/358 (0%) Strand = Plus / Minus Query: 331 ggcattgcacctcccaaaatcatcg-tcttcacaaaatctggttcacaaacttttgcctt 389 ||||| || |||| ||||||||||| |||| ||||| ||||| ||| ||||||||||||| Sbjct: 3677825 ggcatcgctcctctcaaaatcatcgctcttaacaaa-tctggctcataaacttttgcctt 3677767 Query: 390 aacataagcttttagaatggtgttatacacaaaggaatttctacagtactttgattcatt 449 |||| |||||| |||| ||| ||||||||||| ||||| |||||||||||||||||||| Sbjct: 3677766 tacatgagctttaagaagggtattatacacaaatgaattcctacagtactttgattcatt 3677707 Query: 450 cagttctgcaaaaactttctttgcattttccaagtcaccaatctctgcaaaattttcaag 509 |||||| |||||||| ||||||||||| ||||||| ||| | |||||||| ||||||| Sbjct: 3677706 cagttcgtcaaaaactctctttgcatttaccaagtcgccattttctgcaaagctttcaag 3677647 Query: 510 caataaatgagtggtctccaaccatggtgttgaacttttcaccttcctagtgacaacttc 569 | | |||||| ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 3677646 tatcatatgagttgtctccaaccatggtgttgaacttttcaccttcttggtgacaacttc 3677587 Query: 570 ctctcttcccatattcattgtgttcacagcttgtttcacaagacctgctttcaagcaacc 629 | || | |||| ||| || |||| ||||| ||| |||| ||||||||||||||| || Sbjct: 3677586 tttctttgctatatccatcgtcttcagagcttctttaacaatacctgctttcaagcagcc 3677527 Query: 630 caatggccaagtggcgatatgtaatagcatttggttgacaaccacttgctctcatttc 687 || | ||||||||| ||||| |||||||| || ||||||||| ||||||||||||| Sbjct: 3677526 taa-cgtcaagtggcggtatgtgatagcattcggctgacaaccatttgctctcatttc 3677470
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 258 bits (130), Expect = 2e-65 Identities = 304/358 (84%), Gaps = 3/358 (0%) Strand = Plus / Minus Query: 331 ggcattgcacctcccaaaatcatcg-tcttcacaaaatctggttcacaaacttttgcctt 389 ||||| || |||| ||||||||||| |||| ||||| ||||| ||| ||||||||||||| Sbjct: 1322 ggcatcgctcctctcaaaatcatcgctcttaacaaa-tctggctcataaacttttgcctt 1264 Query: 390 aacataagcttttagaatggtgttatacacaaaggaatttctacagtactttgattcatt 449 |||| |||||| |||| ||| ||||||||||| ||||| |||||||||||||||||||| Sbjct: 1263 tacatgagctttaagaagggtattatacacaaatgaattcctacagtactttgattcatt 1204 Query: 450 cagttctgcaaaaactttctttgcattttccaagtcaccaatctctgcaaaattttcaag 509 |||||| |||||||| ||||||||||| ||||||| ||| | |||||||| ||||||| Sbjct: 1203 cagttcgtcaaaaactctctttgcatttaccaagtcgccattttctgcaaagctttcaag 1144 Query: 510 caataaatgagtggtctccaaccatggtgttgaacttttcaccttcctagtgacaacttc 569 | | |||||| ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 1143 tatcatatgagttgtctccaaccatggtgttgaacttttcaccttcttggtgacaacttc 1084 Query: 570 ctctcttcccatattcattgtgttcacagcttgtttcacaagacctgctttcaagcaacc 629 | || | |||| ||| || |||| ||||| ||| |||| ||||||||||||||| || Sbjct: 1083 tttctttgctatatccatcgtcttcagagcttctttaacaatacctgctttcaagcagcc 1024 Query: 630 caatggccaagtggcgatatgtaatagcatttggttgacaaccacttgctctcatttc 687 || | ||||||||| ||||| |||||||| || ||||||||| ||||||||||||| Sbjct: 1023 taa-cgtcaagtggcggtatgtgatagcattcggctgacaaccatttgctctcatttc 967
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 258 bits (130), Expect = 2e-65 Identities = 304/358 (84%), Gaps = 3/358 (0%) Strand = Plus / Minus Query: 331 ggcattgcacctcccaaaatcatcg-tcttcacaaaatctggttcacaaacttttgcctt 389 ||||| || |||| ||||||||||| |||| ||||| ||||| ||| ||||||||||||| Sbjct: 156331 ggcatcgctcctctcaaaatcatcgctcttaacaaa-tctggctcataaacttttgcctt 156273 Query: 390 aacataagcttttagaatggtgttatacacaaaggaatttctacagtactttgattcatt 449 |||| |||||| |||| ||| ||||||||||| ||||| |||||||||||||||||||| Sbjct: 156272 tacatgagctttaagaagggtattatacacaaatgaattcctacagtactttgattcatt 156213 Query: 450 cagttctgcaaaaactttctttgcattttccaagtcaccaatctctgcaaaattttcaag 509 |||||| |||||||| ||||||||||| ||||||| ||| | |||||||| ||||||| Sbjct: 156212 cagttcgtcaaaaactctctttgcatttaccaagtcgccattttctgcaaagctttcaag 156153 Query: 510 caataaatgagtggtctccaaccatggtgttgaacttttcaccttcctagtgacaacttc 569 | | |||||| ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 156152 tatcatatgagttgtctccaaccatggtgttgaacttttcaccttcttggtgacaacttc 156093 Query: 570 ctctcttcccatattcattgtgttcacagcttgtttcacaagacctgctttcaagcaacc 629 | || | |||| ||| || |||| ||||| ||| |||| ||||||||||||||| || Sbjct: 156092 tttctttgctatatccatcgtcttcagagcttctttaacaatacctgctttcaagcagcc 156033 Query: 630 caatggccaagtggcgatatgtaatagcatttggttgacaaccacttgctctcatttc 687 || | ||||||||| ||||| |||||||| || ||||||||| ||||||||||||| Sbjct: 156032 taa-cgtcaagtggcggtatgtgatagcattcggctgacaaccatttgctctcatttc 155976
>dbj|AK067263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096G17, full insert sequence Length = 2524 Score = 214 bits (108), Expect = 3e-52 Identities = 209/240 (87%), Gaps = 2/240 (0%) Strand = Plus / Minus Query: 331 ggcattgcacctcccaaaatcatcg-tcttcacaaaatctggttcacaaacttttgcctt 389 ||||| || |||| ||||||||||| |||| ||||| ||||| ||| ||||||||||||| Sbjct: 256 ggcatcgctcctctcaaaatcatcgctcttaacaaa-tctggctcataaacttttgcctt 198 Query: 390 aacataagcttttagaatggtgttatacacaaaggaatttctacagtactttgattcatt 449 |||| |||||| |||| ||| ||||||||||| ||||| |||||||||||||||||||| Sbjct: 197 tacatgagctttaagaagggtattatacacaaatgaattcctacagtactttgattcatt 138 Query: 450 cagttctgcaaaaactttctttgcattttccaagtcaccaatctctgcaaaattttcaag 509 |||||| |||||||| ||||||||||| ||||||| ||| | |||||||| ||||||| Sbjct: 137 cagttcgtcaaaaactctctttgcatttaccaagtcgccattttctgcaaagctttcaag 78 Query: 510 caataaatgagtggtctccaaccatggtgttgaacttttcaccttcctagtgacaacttc 569 | | |||||| ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 77 tatcatatgagttgtctccaaccatggtgttgaacttttcaccttcttggtgacaacttc 18
>ref|NM_124663.1| Arabidopsis thaliana unknown protein AT5G52850 mRNA, complete cds Length = 2682 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Minus Query: 453 ttctgcaaaaactttctttgcattttccaag 483 |||| |||||||||||||||||| ||||||| Sbjct: 1764 ttcttcaaaaactttctttgcatcttccaag 1734
>dbj|AB009055.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC20 Length = 81575 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Plus Query: 453 ttctgcaaaaactttctttgcattttccaag 483 |||| |||||||||||||||||| ||||||| Sbjct: 20909 ttcttcaaaaactttctttgcatcttccaag 20939
>emb|AL110500.1|CEY87G2A Caenorhabditis elegans YAC Y87G2A, complete sequence Length = 123091 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 226 cttttcatcataatccttcaaa 247 |||||||||||||||||||||| Sbjct: 1658 cttttcatcataatccttcaaa 1637
>gb|BT017283.1| Zea mays clone EL01N0314F02.c mRNA sequence Length = 1080 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 actgatgttttccttttcatc 234 ||||||||||||||||||||| Sbjct: 1010 actgatgttttccttttcatc 990
>gb|AY138541.1| Ceratotherium simum microsatellite 32A sequence Length = 325 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 511 aataaatgagtggtctccaac 531 ||||||||||||||||||||| Sbjct: 147 aataaatgagtggtctccaac 167
>gb|AC158463.7| Mus musculus chromosome 19, clone RP23-71D10, complete sequence Length = 190195 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 23 tgtaactcatacacaaaggaaacac 47 ||||||||||||||||||| ||||| Sbjct: 17001 tgtaactcatacacaaagggaacac 16977
>gb|AC101735.8| Mus musculus chromosome 19, clone RP23-426K3, complete sequence Length = 197927 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 23 tgtaactcatacacaaaggaaacac 47 ||||||||||||||||||| ||||| Sbjct: 117769 tgtaactcatacacaaagggaacac 117745
>gb|AC090506.7| Homo sapiens chromosome 18, clone RP11-675P14, complete sequence Length = 188609 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 cttttcatcataatccttcaa 246 ||||||||||||||||||||| Sbjct: 145359 cttttcatcataatccttcaa 145339
>emb|AL929031.3| Zebrafish DNA sequence from clone CH211-255L18 in linkage group 17, complete sequence Length = 187548 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 tttcatcataatccttcaaag 248 ||||||||||||||||||||| Sbjct: 106087 tttcatcataatccttcaaag 106107
>emb|AL671998.10| Mouse DNA sequence from clone RP23-71G11 on chromosome X, complete sequence Length = 220669 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 acctccttggataccaaaaga 103 ||||||||||||||||||||| Sbjct: 121197 acctccttggataccaaaaga 121217
>gb|AC154043.1| Drosophila melanogaster clone BACR39O11, complete sequence Length = 182468 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 aaaaactttctttgcatttt 478 |||||||||||||||||||| Sbjct: 9070 aaaaactttctttgcatttt 9089
>gb|AC154041.1| Drosophila melanogaster clone BACR43N11, complete sequence Length = 157286 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 aaaaactttctttgcatttt 478 |||||||||||||||||||| Sbjct: 2157 aaaaactttctttgcatttt 2138
>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence Length = 1590432 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tgcacttcatcaagtgcaca 127 |||||||||||||||||||| Sbjct: 1085838 tgcacttcatcaagtgcaca 1085857
>gb|AC091781.20| Trypanosoma brucei chromosome 4 clone RPCI93-30K5, complete sequence Length = 144951 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tgcacttcatcaagtgcaca 127 |||||||||||||||||||| Sbjct: 54639 tgcacttcatcaagtgcaca 54658
>gb|AC159410.1| Trypanosoma brucei chromosome 4 clone RPCI93-1D20, complete sequence Length = 154694 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tgcacttcatcaagtgcaca 127 |||||||||||||||||||| Sbjct: 80153 tgcacttcatcaagtgcaca 80134
>gb|AC115896.9| Mus musculus chromosome 1, clone RP24-443M8, complete sequence Length = 203303 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 aaatctggttcacaaacttt 383 |||||||||||||||||||| Sbjct: 188559 aaatctggttcacaaacttt 188540
>ref|XM_425583.1| PREDICTED: Gallus gallus similar to Tbc1d8 protein (LOC428012), mRNA Length = 4476 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 attcattcagttctgcaaaa 462 |||||||||||||||||||| Sbjct: 4143 attcattcagttctgcaaaa 4162
>ref|XM_588580.2| PREDICTED: Bos taurus similar to PCTAIRE protein kinase 2 (LOC539655), partial mRNA Length = 3657 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctgtatgaacaatgtcatgt 284 |||||||||||||||||||| Sbjct: 854 ctgtatgaacaatgtcatgt 835
>gb|AC118216.15| Mus musculus chromosome 1, clone RP23-209N14, complete sequence Length = 269784 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 619 ttcaagcaacccaatggcca 638 |||||||||||||||||||| Sbjct: 107223 ttcaagcaacccaatggcca 107242
>ref|XM_539731.2| PREDICTED: Canis familiaris similar to PCTAIRE protein kinase 2 (LOC482614), mRNA Length = 3971 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctgtatgaacaatgtcatgt 284 |||||||||||||||||||| Sbjct: 832 ctgtatgaacaatgtcatgt 813
>emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, complete sequence Length = 25468 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 ctgcaaaattttcaagcaat 513 |||||||||||||||||||| Sbjct: 25044 ctgcaaaattttcaagcaat 25025
>ref|XM_646416.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (161.t00008) partial mRNA Length = 1035 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 caaaaactttctttgcattt 477 |||||||||||||||||||| Sbjct: 346 caaaaactttctttgcattt 327
>emb|AL512268.10| Human DNA sequence from clone RP11-477A22 on chromosome X Contains a CpG island, complete sequence Length = 26359 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 tacagtactttgattcattcagtt 454 |||||||| ||||||||||||||| Sbjct: 2689 tacagtacattgattcattcagtt 2666
>emb|AL356267.27| Human DNA sequence from clone RP11-309G3 on chromosome 1 Contains the 5' end of the STX6 gene for syntaxin 6, the MR1 gene for major histocompatibility complex class I-related, the IER5 gene for immediate early response 5, the 5' end of a novel gene (LOC284646) and two CpG islands, complete sequence Length = 181808 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tgtcctagctgattgtttta 22 |||||||||||||||||||| Sbjct: 84471 tgtcctagctgattgtttta 84452
>emb|AL009182.17|HS782G3 Human DNA sequence from clone RP4-782G3 on chromosome 1q24 Contains the 5' end of the gene for SPT3-associated factor 42 (STAF42), a novel gene, the gene for a novel protein (C1orf32) similar to liver-specific bHLH-Zip transcription factor (LISCH7) and four CpG islands, complete sequence Length = 111020 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 caagtcaccaatctctgcaa 499 |||||||||||||||||||| Sbjct: 21128 caagtcaccaatctctgcaa 21109
>gb|AC148407.2| Xenopus tropicalisBAC clone ISB1-124I14 containing the sox11 gene, complete cds, complete sequence Length = 85265 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 taacataagcttttagaatg 408 |||||||||||||||||||| Sbjct: 67647 taacataagcttttagaatg 67628
>gb|AC010040.6| Drosophila melanogaster 3L BAC RP98-13E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 159672 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 aaaggaatttctacagtact 439 |||||||||||||||||||| Sbjct: 29058 aaaggaatttctacagtact 29077
>gb|AC010037.7| Drosophila melanogaster 3L BAC RP98-6E4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187555 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 aaaggaatttctacagtact 439 |||||||||||||||||||| Sbjct: 5895 aaaggaatttctacagtact 5876
>gb|AF312225.1|AF312225 Homo sapiens chromosome 2 map 2q37.1, complete sequence Length = 345102 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 actttctttgcattttccaa 482 |||||||||||||||||||| Sbjct: 312874 actttctttgcattttccaa 312855
>gb|AC012433.7| Homo sapiens, clone RP11-10I6, complete sequence Length = 144804 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttgttttatgtaactcatac 34 |||||||||||||||||||| Sbjct: 43738 ttgttttatgtaactcatac 43719
>gb|AC154485.2| Mus musculus BAC clone RP24-117M9 from chromosome 12, complete sequence Length = 154864 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttcatcataatccttcaaag 248 |||||||||||||||||||| Sbjct: 69411 ttcatcataatccttcaaag 69430
>ref|NM_067306.2| Caenorhabditis elegans F14F7.5 (F14F7.5) mRNA, complete cds Length = 3062 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 ctgcaaaattttcaagcaat 513 |||||||||||||||||||| Sbjct: 1947 ctgcaaaattttcaagcaat 1928
>gb|AC068134.5| Homo sapiens BAC clone RP11-762N20 from 2, complete sequence Length = 181068 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 actttctttgcattttccaa 482 |||||||||||||||||||| Sbjct: 5773 actttctttgcattttccaa 5754
>gb|AC068274.5| Homo sapiens BAC clone RP11-119B15 from 2, complete sequence Length = 118955 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 tgttttccttttcatcataa 238 |||||||||||||||||||| Sbjct: 40388 tgttttccttttcatcataa 40407
>gb|AC138229.16| Mus musculus chromosome 1, clone RP23-399N18, complete sequence Length = 211732 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 aaatctggttcacaaacttt 383 |||||||||||||||||||| Sbjct: 193914 aaatctggttcacaaacttt 193933
>emb|BX679665.3| Mouse DNA sequence from clone RP23-247J17 on chromosome 2, complete sequence Length = 34061 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 caaaattttcaagcaataaa 516 |||||||||||||||||||| Sbjct: 7126 caaaattttcaagcaataaa 7107
>gb|AE003556.3| Drosophila melanogaster chromosome 3L, section 29 of 83 of the complete sequence Length = 281917 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 aaaggaatttctacagtact 439 |||||||||||||||||||| Sbjct: 216172 aaaggaatttctacagtact 216191
>gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15 of 83 of the complete sequence Length = 315988 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 aaaaactttctttgcatttt 478 |||||||||||||||||||| Sbjct: 51044 aaaaactttctttgcatttt 51025
>dbj|AP000911.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-713P17, complete sequence Length = 185957 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 caggcattgcacctcccaaa 348 |||||||||||||||||||| Sbjct: 115853 caggcattgcacctcccaaa 115834
>emb|AL954717.9| Zebrafish DNA sequence from clone CH211-215E6 in linkage group 24, complete sequence Length = 211099 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 tctttgcattttccaagtca 486 |||||||||||||||||||| Sbjct: 19441 tctttgcattttccaagtca 19422
>gb|AC147612.5| Mus musculus BAC clone RP23-374K9 from 6, complete sequence Length = 190156 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 tgcaaaattttcaagcaata 514 |||||||||||||||||||| Sbjct: 122577 tgcaaaattttcaagcaata 122558
>emb|AL844510.10| Mouse DNA sequence from clone RP23-54C21 on chromosome 2, complete sequence Length = 121507 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 ctcatacacaaaggaaacaccagt 51 |||||||||||||||| ||||||| Sbjct: 6431 ctcatacacaaaggaaccaccagt 6408 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,711,649 Number of Sequences: 3902068 Number of extensions: 7711649 Number of successful extensions: 155941 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 155763 Number of HSP's gapped (non-prelim): 172 length of query: 687 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 664 effective length of database: 17,143,297,704 effective search space: 11383149675456 effective search space used: 11383149675456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
