ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9n09 |
|---|---|
| Clone Library Name | barley_pub |
>XPO1_HUMAN (O14980) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 73.9 bits (180), Expect = 4e-13 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 4/80 (5%) Frame = -2 Query: 637 AEVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEEAAV----QREKERQ 470 A+V FV GL D+P+FK H+RDFLVQ KEF+ +D DL+ EE + E++ + Sbjct: 992 AQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHK 1051 Query: 469 RMLAIPGLIAPSELQDEMVD 410 R +++PG+ P E+ +EM D Sbjct: 1052 RQMSVPGIFNPHEIPEEMCD 1071
>XPO1_RAT (Q80U96) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 73.2 bits (178), Expect = 7e-13 Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 4/80 (5%) Frame = -2 Query: 637 AEVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEE---AAVQREKERQR 467 A+V FV GL D+P+FK H+RDFLVQ KEF+ +D DL+ EE A Q ++E+ + Sbjct: 992 AQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHK 1051 Query: 466 M-LAIPGLIAPSELQDEMVD 410 + +++PG++ P E+ +EM D Sbjct: 1052 LQMSVPGILNPHEIPEEMCD 1071
>XPO1_MOUSE (Q6P5F9) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 73.2 bits (178), Expect = 7e-13 Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 4/80 (5%) Frame = -2 Query: 637 AEVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEE---AAVQREKERQR 467 A+V FV GL D+P+FK H+RDFLVQ KEF+ +D DL+ EE A Q ++E+ + Sbjct: 992 AQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHK 1051 Query: 466 M-LAIPGLIAPSELQDEMVD 410 + +++PG++ P E+ +EM D Sbjct: 1052 LQMSVPGILNPHEIPEEMCD 1071
>XPO1_DROME (Q9TVM2) Exportin-1 (Chromosome region maintenance 1 protein)| (Protein embargoed) Length = 1063 Score = 60.5 bits (145), Expect = 4e-09 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Frame = -2 Query: 634 EVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEE----AAVQREKERQR 467 +V FV GL ++ +FK H+RDFL+Q +E + +D+ DLY EE A ++ + Q Sbjct: 984 QVKVFVTGLFNLDENVQAFKEHLRDFLIQIREATGEDDSDLYLEEREAALAEEQSNKHQM 1043 Query: 466 MLAIPGLIAPSELQDEMVD 410 IPG++ P EL ++M D Sbjct: 1044 QRNIPGMLNPHELPEDMQD 1062
>XPO1_SCHPO (P14068) Exportin-1 (Chromosome region maintenance protein 1)| (Caffeine resistance protein 2) Length = 1078 Score = 50.1 bits (118), Expect = 6e-06 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%) Frame = -2 Query: 634 EVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKDLYAE----EAAVQREKERQR 467 ++ +FV +L D FK +RDFL+Q KEF DN +LY E E A Q++ + ++ Sbjct: 999 QIQEFVQTVLALNQDSIKFKLALRDFLIQLKEFGG-DNAELYLEEKEQELAAQQKAQLEK 1057 Query: 466 MLAIPGLIAPSEL 428 + +PG+I P ++ Sbjct: 1058 AMTVPGMIKPVDM 1070
>XPO1_YEAST (P30822) Exportin-1 (Chromosome region maintenance protein 1)| Length = 1084 Score = 47.4 bits (111), Expect = 4e-05 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = -2 Query: 634 EVTKFVDGLLGSRHDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEE----AAVQREKERQR 467 ++ F+ L DL FK +RDFLVQ KE L+AE+ Q ER++ Sbjct: 1010 QIASFLSALTKQYKDLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKENALMEQNRLEREK 1069 Query: 466 MLAIPGLIAPSELQD 422 I GL+ PSEL D Sbjct: 1070 AAKIGGLLKPSELDD 1084
>TBP_TRIGA (Q92146) TATA-box-binding protein (TATA-box factor) (TATA-binding| factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit) Length = 302 Score = 35.0 bits (79), Expect = 0.20 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 7/97 (7%) Frame = +1 Query: 295 LLSPQPPWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLPSRLAIR*GQSALGWQASVA 474 + SP P+ L P +P Q++N +S E Q + A + S S Sbjct: 27 IFSPMMPYGTGLTP------QPAQSTNSLSILEEQQRQQQQQQAAAQQSTSQPTQAPSGQ 80 Query: 475 FPFLFVPQ-----PLPHTDPCYPGLRTPL--IAPGSP 564 P LF Q PLP T P YP TP+ I P +P Sbjct: 81 TPQLFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATP 117
>TBP_XENLA (P27633) TATA-box-binding protein (TATA-box factor) (TATA-binding| factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit) Length = 297 Score = 34.7 bits (78), Expect = 0.26 Identities = 36/104 (34%), Positives = 44/104 (42%), Gaps = 9/104 (8%) Frame = +1 Query: 280 ITAGTLLSPQPPWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLPSRLAIR*GQSAL-- 453 IT GT L+PQP QT+N +S E Q ++ QS L Sbjct: 31 ITYGTGLTPQPV----------------QTTNSLSILEEQQRQQQQTQ------QSTLQQ 68 Query: 454 GWQASVAFPFLFVPQ-----PLPHTDPCYPGLRTPL--IAPGSP 564 G Q S P LF PQ PLP P YP TP+ I+P +P Sbjct: 69 GNQGSGQTPQLFHPQTLTTAPLPGNTPLYPSPITPMTPISPATP 112
>APC_XENLA (P70039) Adenomatous polyposis coli homolog (Protein APC)| Length = 2829 Score = 33.9 bits (76), Expect = 0.45 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 7/97 (7%) Frame = +1 Query: 259 NRRTGNKITAGTLLSPQP-------PWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLP 417 N R+G++ +A + SPQP P + +++PG G+ PN+ S + S ST S Sbjct: 2297 NSRSGSRDSASSRPSPQPLSRPLQSPGRNSISPGKNGISPPNKFSQ-LPRTTSPSTASTK 2355 Query: 418 SRLAIR*GQSALGWQASVAFPFLFVPQPLPHTDPCYP 528 S + R ++ G Q S P L LP T P Sbjct: 2356 SSGSGRMSYTSPGRQLSQ--PNLSKQSGLPKTHSSIP 2390
>TBP_CHICK (O13270) TATA-box-binding protein (TATA-box factor) (TATA-binding| factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit) Length = 302 Score = 33.5 bits (75), Expect = 0.59 Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 11/101 (10%) Frame = +1 Query: 295 LLSPQPPWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLPSRLAIR*GQSALGWQA--- 465 + SP P+ L P +P Q++N +S E Q + A QS+ QA Sbjct: 27 IFSPMMPYGTGLTP------QPVQSTNSLSILEEQQRQQQQQQAA----QSSTSQQATQG 76 Query: 466 -SVAFPFLFVPQ-----PLPHTDPCYPGLRTPL--IAPGSP 564 S P LF Q PLP T P YP TP+ I P +P Sbjct: 77 TSGQTPQLFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATP 117
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = +1 Query: 220 SPRLPIIN*HKSWNRRT-----GNKITAGTLLSPQPPWKKTLAPGHGGLWRPNQTSNWIS 384 SPRLPI H S R +K T+G LSP ++ P L TS+W Sbjct: 1028 SPRLPISASHSSKTRSLVGGLLQSKFTSGAFLSPSVSVQECRTPRAASLMNIPSTSSWSV 1087 Query: 385 NAESQSTMSLPS 420 S ++PS Sbjct: 1088 PPPLTSVFTMPS 1099
>DISC_DROME (P23792) Protein disconnected| Length = 568 Score = 32.0 bits (71), Expect = 1.7 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 96 ILYHAQHTHKMFHRALKTHPSNHPHSPQNAPGLPSKS 206 +L H H+H+ H L +HP + SP ++PG S S Sbjct: 14 LLGHGPHSHQHVHSHLPSHPQPNAASPASSPGGSSGS 50
>TBP_TRIFL (Q92117) TATA-box-binding protein (TATA-box factor) (TATA-binding| factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit) Length = 300 Score = 31.2 bits (69), Expect = 2.9 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 7/97 (7%) Frame = +1 Query: 295 LLSPQPPWKKTLAPGHGGLWRPNQTSNWISNAESQSTMSLPSRLAIR*GQSALGWQASVA 474 + SP P+ L P +P Q++N +S E Q + A + S S Sbjct: 27 IFSPMMPYGTGLTP------QPAQSTNSLSILEEQQRQQ--QQAAAQQSTSQPTQAPSGQ 78 Query: 475 FPFLFVPQ-----PLPHTDPCYPGLRTPL--IAPGSP 564 P LF Q PLP T P YP TP+ I P +P Sbjct: 79 TPQLFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATP 115
>SRY_BOSMU (Q9XS37) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 3.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 247 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 339 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>SRY_BOSJA (Q8SPQ1) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 3.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 247 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 339 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>SRY_BOSIN (Q7JGF7) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 3.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 247 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 339 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>SRY_BOSGF (Q7JGF9) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 3.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 247 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 339 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>SRY_BISBO (Q27949) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 3.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 247 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 339 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>SRY_BISBI (Q8SPQ2) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 30.8 bits (68), Expect = 3.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 247 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 339 H SW NK+T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPFNKSLEPG 221
>HRG_BOVIN (P33433) Histidine-rich glycoprotein (Histidine-proline-rich| glycoprotein) (HPRG) (Fragments) Length = 396 Score = 30.0 bits (66), Expect = 6.5 Identities = 18/68 (26%), Positives = 25/68 (36%) Frame = +3 Query: 99 LYHAQHTHKMFHRALKTHPSNHPHSPQNAPGLPSKSCGKIESTPPYHQLAQILESPNRK* 278 ++H + + H H H HSP P P K G + P+ P Sbjct: 162 VFHRRFSAVQHHLGRPFHSGEHEHSPAGRP--PFKPSGSKDHGHPHESYNFRCPPPLEHK 219 Query: 279 NYSRHPPF 302 N+S PPF Sbjct: 220 NHSDSPPF 227
>DMBT1_RAT (Q8CIZ5) Deleted in malignant brain tumors 1 protein precursor| (Ebnerin) (Pancrin) Length = 1418 Score = 29.6 bits (65), Expect = 8.5 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%) Frame = +1 Query: 247 HKSW-NRRTGNKITAGTLLS-----PQPPWKKTLAPGHGGLWRPNQTSNWISNAESQSTM 408 H+ W + G++ AG + S P +T +P G W P T+N +S Q+T Sbjct: 354 HRGWLSHNCGHQEDAGVICSYSQTSSPTPDSQTSSPTPGW-WNPGGTNNDVSYGPEQTTD 412 Query: 409 SLPSRLAIR 435 + S LA+R Sbjct: 413 ATDSGLAVR 421
>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)| Length = 428 Score = 29.6 bits (65), Expect = 8.5 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 1/70 (1%) Frame = +3 Query: 102 YHAQHTHKMFHRALKTHPSNHPHSPQNAPGLPSKSCGKIESTP-PYHQLAQILESPNRK* 278 +HA H H H A H +H H PQ P P P P Q + P ++ Sbjct: 142 HHAHHHHHHHHHA--AHHHHHHHPPQPPPPPPPHMVPYFHQQPAPAPQPPHLPSQPAQQP 199 Query: 279 NYSRHPPFTT 308 PP T+ Sbjct: 200 QPQSQPPQTS 209
>SRY_BUBBU (Q69FB1) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 29.6 bits (65), Expect = 8.5 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +1 Query: 247 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 339 H SW N++T T +S P+ K+L PG Sbjct: 191 HSSWTSLGHNRVTLATRISEDFPFNKSLEPG 221
>SRY_BOVIN (Q03255) Sex-determining region Y protein (Testis-determining| factor) Length = 229 Score = 29.6 bits (65), Expect = 8.5 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 247 HKSWNRRTGNKITAGTLLSPQPPWKKTLAPG 339 H SW NK+T T +S P K+L PG Sbjct: 191 HSSWTSLGHNKVTLATRISADFPCNKSLEPG 221 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,478,464 Number of Sequences: 219361 Number of extensions: 2359921 Number of successful extensions: 6664 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 6275 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6637 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
