ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9n09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009586.1| Triticum aestivum clone wre1n.pk0047.b2:fis, full... 682 0.0
2ref|XM_470491.1| Oryza sativa (japonica cultivar-group), mRNA 250 5e-63
3dbj|AK100745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 250 5e-63
4dbj|AK072679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 250 5e-63
5gb|AY109392.1| Zea mays CL1001_1 mRNA sequence 192 1e-45
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 1e-26
7gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 129 1e-26
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
9gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete s... 94 7e-16
10gb|AY731575.1| Arachis hypogaea clone PM421 microsatellite sequence 48 0.037
11emb|AL353803.23| Human DNA sequence from clone RP11-65J3 on chro... 44 0.58
12gb|BC036799.1| Homo sapiens, clone IMAGE:5590162, mRNA 44 0.58
13gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 2.3
14gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genom... 42 2.3
15emb|BX539313.4| Zebrafish DNA sequence from clone DKEYP-84F3 in ... 42 2.3
16emb|CR318586.3| Zebrafish DNA sequence from clone CH211-239O22 i... 42 2.3
17emb|AL732455.6| Zebrafish DNA sequence from clone CH211-225J17 i... 42 2.3
18emb|CT476810.5| Zebrafish DNA sequence from clone ZFOS-260D6 in ... 42 2.3
19ref|NM_121708.2| Arabidopsis thaliana XPO1A; protein transporter... 40 9.1
20gb|BC085366.1| Danio rerio zgc:101553, mRNA (cDNA clone MGC:1015... 40 9.1
21ref|NM_001007419.1| Danio rerio zgc:101553 (zgc:101553), mRNA 40 9.1
22gb|AC109268.10| Mus musculus chromosome 1, clone RP23-305F24, co... 40 9.1
23ref|XM_369807.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 9.1
24gb|AC140199.2| Mus musculus BAC clone RP23-480D7 from chromosome... 40 9.1
25gb|AY575851.1| Homo sapiens TNFRSF1A-associated via death domain... 40 9.1
26gb|AC130221.4| Mus musculus BAC clone RP23-168E11 from chromosom... 40 9.1
27gb|AC125164.3| Mus musculus BAC clone RP24-423L16 from chromosom... 40 9.1
28gb|AE014075.1| Escherichia coli CFT073, complete genome 40 9.1
29gb|CP000243.1| Escherichia coli UTI89, complete genome 40 9.1
30emb|AL596330.6| Human DNA sequence from clone RP11-3L21 on chrom... 40 9.1
31gb|AY096633.1| Arabidopsis thaliana putative Exportin1 (XPO1) pr... 40 9.1
32gb|AY056126.1| Arabidopsis thaliana putative exportin1 protein X... 40 9.1
33emb|AL929414.5| Mouse DNA sequence from clone RP23-222A19 on chr... 40 9.1
34gb|AC022018.10| Homo sapiens chromosome 10 clone RP11-214N15, co... 40 9.1
35gb|AC023533.6| Homo sapiens chromosome 8, clone RP11-288G19, com... 40 9.1
36dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
37gb|AC040160.4|AC040160 Homo sapiens chromosome 16 clone CTC-277H... 40 9.1
38gb|AC074143.5| Homo sapiens chromosome 16 clone RP11-5A19, compl... 40 9.1
39gb|AY995114.1| Homo sapiens tumor necrosis factor receptor 1-ass... 40 9.1
40gb|AC011603.37| Homo sapiens 12 BAC RP11-386G11 (Roswell Park Ca... 40 9.1
41dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
42dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
43emb|Y18469.1|ATHY18469 Arabidopsis thaliana mRNA for Exportin1 (... 40 9.1
44gb|AC151746.3| Mus musculus BAC clone RP23-19M11 from 9, complet... 40 9.1
45emb|AJ311614.2|HSA311614 Homo sapiens partial TRADD gene for TNF... 40 9.1
46gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 9.1
47dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 9.1
48dbj|AP006709.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 9.1
49dbj|AP006701.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 9.1
50gb|CP000036.1| Shigella boydii Sb227, complete genome 40 9.1
51gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 9.1
52emb|AL672228.14| Mouse DNA sequence from clone RP24-133C15 on ch... 40 9.1 
>gb|BT009586.1| Triticum aestivum clone wre1n.pk0047.b2:fis, full insert mRNA
           sequence
          Length = 890

 Score =  682 bits (344), Expect = 0.0
 Identities = 423/446 (94%), Gaps = 15/446 (3%)
 Strand = Plus / Minus

                                                                       
Query: 231 ccctatcatcaactagca---caaatcttggaatcgccgaaccggaaataaaattacagc 287
           ||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||
Sbjct: 590 ccctatcatcaactagcagcacaaatcttggaatcgccaaaccggaaataaaattacagc 531

                                                                       
Query: 288 aggca---ccctcctttcaccacaaccacc---ctggaagaaaactctggctccgggaca 341
           |||||   ||||||||||||||| ||||||   |||||||||||||| ||||||||||||
Sbjct: 530 aggcatcaccctcctttcaccaccaccaccaccctggaagaaaactcaggctccgggaca 471

                                                                       
Query: 342 tggaggcctctggaggcctaatcaaacatcaaactggattagcaatgcag-----aatca 396
           ||||||||||||||||||||||| | ||||||||||||||||||||||||     |||||
Sbjct: 470 tggaggcctctggaggcctaatcgaccatcaaactggattagcaatgcagtgcacaatca 411

                                                                       
Query: 397 cagagcactatgagtctaccatctcgtcttgcaattcgctaggggcaatcagccctggga 456
           ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 410 cagagcactatgagtctaccatctcatcttgcaattcgcttggggcaatcagccctggga 351

                                                                       
Query: 457 tggcaagcatccgttgcctttccttttctctttgtaccgcagcctcttccgcatacagat 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tggcaagcatccgttgcctttccttttctctttgtaccgcagcctcttccgcatacagat 291

                                                                       
Query: 517 ccttgttatcctgggctgagaactcctttgattgcaccaggaagtccctaatatggtttt 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ccttgttatcctgggctgagaactcctttgattgcaccaggaagtccctaatatggtttt 231

                                                                       
Query: 577 tgaagcttgggaggtcatgtctcgaaccaaggagcccatcaacaaacttggtcacctcag 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tgaagcttgggaggtcatgtctcgaaccaaggagcccatcaacaaacttggtcacctcag 171

                                     
Query: 637 ctaccggtcatgttaggaaatgatgc 662
           || || ||||||||||||||||||||
Sbjct: 170 ctgcc-gtcatgttaggaaatgatgc 146



 Score =  224 bits (113), Expect = 3e-55
 Identities = 129/133 (96%), Gaps = 1/133 (0%)
 Strand = Plus / Minus

                                                                       
Query: 43  ataatacagtcatcaaatctatagactaaactaacaattaaggatcaacatccatactat 102
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ataatacagtcatcaaatctatagactaaactaacaattaaggatcaacatccatactat 701

                                                                       
Query: 103 atcatgctcagcacacgcacaaaatgtttcaccgagcacttaaaacacatccatctaacc 162
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 700 atcatgctcagcacacgcacaaaatgtttcaccgagcac-taaaacacatccatctagcc 642

                        
Query: 163 atccacacagccc 175
           | ||| |||||||
Sbjct: 641 aaccaaacagccc 629
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>ref|XM_470491.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3679

 Score =  250 bits (126), Expect = 5e-63
 Identities = 250/289 (86%), Gaps = 3/289 (1%)
 Strand = Plus / Minus

                                                                        
Query: 373  aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 432
            |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 3242 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 3185

                                                                        
Query: 433  cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 492
            |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 3184 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 3125

                                                                        
Query: 493  ccgcagcctcttccgcatacagatccttgttatcctgggctgagaactcctttgattgca 552
            | ||||||||||| ||||||| |||||| |||||||| || |||||||||||||||||||
Sbjct: 3124 cagcagcctcttcagcatacaaatccttattatcctgagccgagaactcctttgattgca 3065

                                                                        
Query: 553  ccaggaagtccctaatatggtttttgaagcttgggaggtcatgtctcgaaccaaggagcc 612
            ||||||| |||||||||||||||||||||||||| ||||||||| | |||| ||| ||||
Sbjct: 3064 ccaggaaatccctaatatggtttttgaagcttggaaggtcatgttttgaactaagaagcc 3005

                                                             
Query: 613  catcaacaaacttggtcacctcagctaccggtcatgttaggaaatgatg 661
            |||||||||| || || ||||||| ||   |||||||| ||||||||||
Sbjct: 3004 catcaacaaattttgtaacctcag-taggtgtcatgttgggaaatgatg 2957



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                     
Query: 267  aaccggaaataaaattacagcaggcaccctcctttcaccac 307
            ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 3350 aaccgaaaataaaattacagcaggca-ccttctttcaccac 3311
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>dbj|AK100745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118H18, full
            insert sequence
          Length = 3882

 Score =  250 bits (126), Expect = 5e-63
 Identities = 250/289 (86%), Gaps = 3/289 (1%)
 Strand = Plus / Minus

                                                                        
Query: 373  aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 432
            |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 3479 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 3422

                                                                        
Query: 433  cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 492
            |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 3421 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 3362

                                                                        
Query: 493  ccgcagcctcttccgcatacagatccttgttatcctgggctgagaactcctttgattgca 552
            | ||||||||||| ||||||| |||||| |||||||| || |||||||||||||||||||
Sbjct: 3361 cagcagcctcttcagcatacaaatccttattatcctgagccgagaactcctttgattgca 3302

                                                                        
Query: 553  ccaggaagtccctaatatggtttttgaagcttgggaggtcatgtctcgaaccaaggagcc 612
            ||||||| |||||||||||||||||||||||||| ||||||||| | |||| ||| ||||
Sbjct: 3301 ccaggaaatccctaatatggtttttgaagcttggaaggtcatgttttgaactaagaagcc 3242

                                                             
Query: 613  catcaacaaacttggtcacctcagctaccggtcatgttaggaaatgatg 661
            |||||||||| || || ||||||| ||   |||||||| ||||||||||
Sbjct: 3241 catcaacaaattttgtaacctcag-taggtgtcatgttgggaaatgatg 3194



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                     
Query: 267  aaccggaaataaaattacagcaggcaccctcctttcaccac 307
            ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 3587 aaccgaaaataaaattacagcaggca-ccttctttcaccac 3548
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>dbj|AK072679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136O19, full
            insert sequence
          Length = 1597

 Score =  250 bits (126), Expect = 5e-63
 Identities = 250/289 (86%), Gaps = 3/289 (1%)
 Strand = Plus / Minus

                                                                        
Query: 373  aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 432
            |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 1186 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 1129

                                                                        
Query: 433  cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 492
            |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 1128 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 1069

                                                                        
Query: 493  ccgcagcctcttccgcatacagatccttgttatcctgggctgagaactcctttgattgca 552
            | ||||||||||| ||||||| |||||| |||||||| || |||||||||||||||||||
Sbjct: 1068 cagcagcctcttcagcatacaaatccttattatcctgagccgagaactcctttgattgca 1009

                                                                        
Query: 553  ccaggaagtccctaatatggtttttgaagcttgggaggtcatgtctcgaaccaaggagcc 612
            ||||||| |||||||||||||||||||||||||| ||||||||| | |||| ||| ||||
Sbjct: 1008 ccaggaaatccctaatatggtttttgaagcttggaaggtcatgttttgaactaagaagcc 949

                                                             
Query: 613  catcaacaaacttggtcacctcagctaccggtcatgttaggaaatgatg 661
            |||||||||| || || ||||||| ||   |||||||| ||||||||||
Sbjct: 948  catcaacaaattttgtaacctcag-taggtgtcatgttgggaaatgatg 901



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                     
Query: 267  aaccggaaataaaattacagcaggcaccctcctttcaccac 307
            ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 1294 aaccgaaaataaaattacagcaggca-ccttctttcaccac 1255
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>gb|AY109392.1| Zea mays CL1001_1 mRNA sequence
          Length = 2488

 Score =  192 bits (97), Expect = 1e-45
 Identities = 219/260 (84%), Gaps = 1/260 (0%)
 Strand = Plus / Plus

                                                                       
Query: 402 cactatgagtctaccatctcgtcttgcaattcgctaggggcaatcagccctgggatggca 461
           ||||| || |||||||||||||||||||| |||||||||||||| ||||| || ||||||
Sbjct: 571 cactacgaatctaccatctcgtcttgcaactcgctaggggcaatgagccccggaatggca 630

                                                                       
Query: 462 agcatccgttgcctttccttttctctttgtaccgcagcctcttccgcatacagatccttg 521
           ||||| ||||| |  ||| | ||||||||  | |||||||||||||| || |||||||||
Sbjct: 631 agcatacgttggcgctccctctctctttgggcagcagcctcttccgcgtatagatccttg 690

                                                                       
Query: 522 ttatcctgggctgagaactcctttgattgcaccaggaagtccctaatatggtttttgaag 581
           ||||||||  ||||||||||||| || |||||||||||||| |||||||||     ||||
Sbjct: 691 ttatcctgaactgagaactccttggactgcaccaggaagtctctaatatggnnnnngaag 750

                                                                       
Query: 582 cttgggaggtcatgtctcgaaccaaggagcccatcaacaaacttggtcacctcagctacc 641
           ||||| || ||| || | |||| ||| || ||||| |||||||| |||||||| | || |
Sbjct: 751 cttggaagatcaagttttgaactaagaagaccatctacaaactttgtcacctcggtta-c 809

                               
Query: 642 ggtcatgttaggaaatgatg 661
            |||||||||||||||||||
Sbjct: 810 tgtcatgttaggaaatgatg 829



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                           
Query: 276 taaaattacagcaggcaccctcctttcaccac 307
           ||||||||||||||||| ||| ||||||||||
Sbjct: 445 taaaattacagcaggca-ccttctttcaccac 475
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 1e-26
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                            
Query: 534      gagaactcctttgattgcaccaggaagtccctaatatggtttttgaagcttgggaggtca 593
                |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 35909890 gagaactcctttgattgcaccaggaaatccctaatatggtttttgaagcttggaaggtca 35909949

                                             
Query: 594      tgtctcgaaccaaggagcccatcaacaaa 622
                ||| | |||| ||| ||||||||||||||
Sbjct: 35909950 tgttttgaactaagaagcccatcaacaaa 35909978



 Score =  121 bits (61), Expect = 3e-24
 Identities = 133/156 (85%), Gaps = 2/156 (1%)
 Strand = Plus / Plus

                                                                            
Query: 373      aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 432
                |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 35909289 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 35909346

                                                                            
Query: 433      cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 492
                |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 35909347 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 35909406

                                                    
Query: 493      ccgcagcctcttccgcatacagatccttgttatcct 528
                | ||||||||||| ||||||| |||||| |||||||
Sbjct: 35909407 cagcagcctcttcagcatacaaatccttattatcct 35909442



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                         
Query: 267      aaccggaaataaaattacagcaggcaccctcctttcaccac 307
                ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 35909181 aaccgaaaataaaattacagcaggca-ccttctttcaccac 35909220



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 645      catgttaggaaatgatgcccc 665
                |||||||||||||||||||||
Sbjct: 31760958 catgttaggaaatgatgcccc 31760978



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 147      acacatccatctaaccatccacaca 171
                ||||||||||||| |||||||||||
Sbjct: 13143748 acacatccatctatccatccacaca 13143772
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>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score =  129 bits (65), Expect = 1e-26
 Identities = 83/89 (93%)
 Strand = Plus / Minus

                                                                         
Query: 534   gagaactcctttgattgcaccaggaagtccctaatatggtttttgaagcttgggaggtca 593
             |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 51235 gagaactcctttgattgcaccaggaaatccctaatatggtttttgaagcttggaaggtca 51176

                                          
Query: 594   tgtctcgaaccaaggagcccatcaacaaa 622
             ||| | |||| ||| ||||||||||||||
Sbjct: 51175 tgttttgaactaagaagcccatcaacaaa 51147



 Score =  121 bits (61), Expect = 3e-24
 Identities = 133/156 (85%), Gaps = 2/156 (1%)
 Strand = Plus / Minus

                                                                         
Query: 373   aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 432
             |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 51836 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 51779

                                                                         
Query: 433   cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 492
             |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 51778 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 51719

                                                 
Query: 493   ccgcagcctcttccgcatacagatccttgttatcct 528
             | ||||||||||| ||||||| |||||| |||||||
Sbjct: 51718 cagcagcctcttcagcatacaaatccttattatcct 51683



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                      
Query: 267   aaccggaaataaaattacagcaggcaccctcctttcaccac 307
             ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 51944 aaccgaaaataaaattacagcaggca-ccttctttcaccac 51905
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 1e-26
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                            
Query: 534      gagaactcctttgattgcaccaggaagtccctaatatggtttttgaagcttgggaggtca 593
                |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 36000020 gagaactcctttgattgcaccaggaaatccctaatatggtttttgaagcttggaaggtca 36000079

                                             
Query: 594      tgtctcgaaccaaggagcccatcaacaaa 622
                ||| | |||| ||| ||||||||||||||
Sbjct: 36000080 tgttttgaactaagaagcccatcaacaaa 36000108



 Score =  121 bits (61), Expect = 3e-24
 Identities = 133/156 (85%), Gaps = 2/156 (1%)
 Strand = Plus / Plus

                                                                            
Query: 373      aactggattagcaatgcagaatcacagagcactatgagtctaccatctcgtcttgcaatt 432
                |||||||||||||| || ||||||||||  | ||||| || |||||||| ||||| ||||
Sbjct: 35999419 aactggattagcaaggctgaatcacaga--attatgaatcaaccatctcatcttgtaatt 35999476

                                                                            
Query: 433      cgctaggggcaatcagccctgggatggcaagcatccgttgcctttccttttctctttgta 492
                |||| |||||||| |||||||| ||||||||||| ||||| |  ||| | ||||||||| 
Sbjct: 35999477 cgcttggggcaataagccctggaatggcaagcattcgttgacgctccctctctctttgtg 35999536

                                                    
Query: 493      ccgcagcctcttccgcatacagatccttgttatcct 528
                | ||||||||||| ||||||| |||||| |||||||
Sbjct: 35999537 cagcagcctcttcagcatacaaatccttattatcct 35999572



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 38/41 (92%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                         
Query: 267      aaccggaaataaaattacagcaggcaccctcctttcaccac 307
                ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 35999311 aaccgaaaataaaattacagcaggca-ccttctttcaccac 35999350



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 645      catgttaggaaatgatgcccc 665
                |||||||||||||||||||||
Sbjct: 31851474 catgttaggaaatgatgcccc 31851494



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 147      acacatccatctaaccatccacaca 171
                ||||||||||||| |||||||||||
Sbjct: 13140523 acacatccatctatccatccacaca 13140547
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>gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete sequence
          Length = 124550

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 107/127 (84%)
 Strand = Plus / Plus

                                                                         
Query: 404   ctatgagtctaccatctcgtcttgcaattcgctaggggcaatcagccctgggatggcaag 463
             ||||||||| ||||| || |||||||| ||| | ||||||||||||||||| || | |||
Sbjct: 51640 ctatgagtccaccatttcatcttgcaactcgattggggcaatcagccctggaatagaaag 51699

                                                                         
Query: 464   catccgttgcctttccttttctctttgtaccgcagcctcttccgcatacagatccttgtt 523
             ||| | ||||| |||  ||||||| ||  ||||||||||||| ||||| ||||| |||||
Sbjct: 51700 cattctttgccgttctctttctctctgagccgcagcctcttcagcatagagatctttgtt 51759

                    
Query: 524   atcctgg 530
             |||||||
Sbjct: 51760 atcctgg 51766
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>gb|AY731575.1| Arachis hypogaea clone PM421 microsatellite sequence
          Length = 355

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 404 ctatgagtctaccatctcgtcttgcaattcgctaggggcaatcagccc 451
           |||||| || ||||| || |||||||||||||| |||||||| |||||
Sbjct: 281 ctatgaatccaccatttcatcttgcaattcgctcggggcaataagccc 234
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>emb|AL353803.23| Human DNA sequence from clone RP11-65J3 on chromosome 9 Contains three
              novel genes, the 5' end of a novel gene, a novel pseudogene
              and seven CpG islands, complete sequence
          Length = 165696

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 336    gggacatggaggcctctggagg 357
              ||||||||||||||||||||||
Sbjct: 156385 gggacatggaggcctctggagg 156406
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>gb|BC036799.1| Homo sapiens, clone IMAGE:5590162, mRNA
          Length = 2035

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 336  gggacatggaggcctctggagg 357
            ||||||||||||||||||||||
Sbjct: 1727 gggacatggaggcctctggagg 1706
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>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
             from chromosome 3, complete sequence
          Length = 151173

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 147   acacatccatctaaccatccacaca 171
             ||||||||||||| |||||||||||
Sbjct: 82890 acacatccatctatccatccacaca 82866
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>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete
             sequence
          Length = 134496

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 645   catgttaggaaatgatgcccc 665
             |||||||||||||||||||||
Sbjct: 86184 catgttaggaaatgatgcccc 86204
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>emb|BX539313.4| Zebrafish DNA sequence from clone DKEYP-84F3 in linkage group 16,
             complete sequence
          Length = 215158

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 471   tgcctttccttttctctttgt 491
             |||||||||||||||||||||
Sbjct: 23799 tgcctttccttttctctttgt 23819
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>emb|CR318586.3| Zebrafish DNA sequence from clone CH211-239O22 in linkage group 7,
             complete sequence
          Length = 30205

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 151   atccatctaaccatccacaca 171
             |||||||||||||||||||||
Sbjct: 16520 atccatctaaccatccacaca 16500
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>emb|AL732455.6| Zebrafish DNA sequence from clone CH211-225J17 in linkage group 7,
             complete sequence
          Length = 192578

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   atccatctaaccatccacaca 171
             |||||||||||||||||||||
Sbjct: 49523 atccatctaaccatccacaca 49543
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>emb|CT476810.5| Zebrafish DNA sequence from clone ZFOS-260D6 in linkage group 7,
            complete sequence
          Length = 19313

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 151  atccatctaaccatccacaca 171
            |||||||||||||||||||||
Sbjct: 2794 atccatctaaccatccacaca 2814
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>ref|NM_121708.2| Arabidopsis thaliana XPO1A; protein transporter AT5G17020 (XPO1A)
            mRNA, complete cds
          Length = 3884

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 507  gcatacagatccttgttatcctgggctgagaactcctttgattgcaccaggaagtc 562
            ||||| ||||| ||||||||||| || || |||||||| || || || ||||||||
Sbjct: 3293 gcatagagatctttgttatcctgagcggaaaactccttagactgtacaaggaagtc 3238
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>gb|BC085366.1| Danio rerio zgc:101553, mRNA (cDNA clone MGC:101553 IMAGE:7215973),
            complete cds
          Length = 1916

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  cctggaagaaaactctggct 333
            ||||||||||||||||||||
Sbjct: 1283 cctggaagaaaactctggct 1302
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>ref|NM_001007419.1| Danio rerio zgc:101553 (zgc:101553), mRNA
          Length = 1916

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  cctggaagaaaactctggct 333
            ||||||||||||||||||||
Sbjct: 1283 cctggaagaaaactctggct 1302
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>gb|AC109268.10| Mus musculus chromosome 1, clone RP23-305F24, complete sequence
          Length = 160975

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 470   ttgcctttccttttctcttt 489
             ||||||||||||||||||||
Sbjct: 68807 ttgcctttccttttctcttt 68826
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>ref|XM_369807.1| Magnaporthe grisea 70-15 hypothetical protein (MG06322.4) partial
           mRNA
          Length = 1281

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 234 tatcatcaactagcacaaatcttg 257
           ||||| ||||||||||||||||||
Sbjct: 491 tatcaacaactagcacaaatcttg 514
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>gb|AC140199.2| Mus musculus BAC clone RP23-480D7 from chromosome 9, complete sequence
          Length = 170896

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   acaaccaccctggaagaaaa 325
             ||||||||||||||||||||
Sbjct: 18672 acaaccaccctggaagaaaa 18653
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>gb|AY575851.1| Homo sapiens TNFRSF1A-associated via death domain (TRADD) gene,
            complete cds
          Length = 9002

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  cccacaaaatgctccaggcc 192
            ||||||||||||||||||||
Sbjct: 5416 cccacaaaatgctccaggcc 5397
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>gb|AC130221.4| Mus musculus BAC clone RP23-168E11 from chromosome 5, complete sequence
          Length = 200384

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    catccatctaaccatccaca 169
              ||||||||||||||||||||
Sbjct: 156892 catccatctaaccatccaca 156911
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>gb|AC125164.3| Mus musculus BAC clone RP24-423L16 from chromosome 1, complete sequence
          Length = 133335

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 470    ttgcctttccttttctcttt 489
              ||||||||||||||||||||
Sbjct: 130976 ttgcctttccttttctcttt 130995
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 440     ggcaatcagccctgggatgg 459
               ||||||||||||||||||||
Sbjct: 1694401 ggcaatcagccctgggatgg 1694382
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 440     ggcaatcagccctgggatgg 459
               ||||||||||||||||||||
Sbjct: 1575185 ggcaatcagccctgggatgg 1575166
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>emb|AL596330.6| Human DNA sequence from clone RP11-3L21 on chromosome 1 Contains the 3'
             end of the gene for a novel protein (FLJ38993) and a novel
             gene, complete sequence
          Length = 79657

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   ctctggctccgggacatgga 345
             ||||||||||||||||||||
Sbjct: 11945 ctctggctccgggacatgga 11926
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>gb|AY096633.1| Arabidopsis thaliana putative Exportin1 (XPO1) protein (At5g17020)
            mRNA, complete cds
          Length = 3259

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 507  gcatacagatccttgttatcctgggctgagaactcctttgattgcaccaggaagtc 562
            ||||| ||||| ||||||||||| || || |||||||| || || || ||||||||
Sbjct: 3125 gcatagagatctttgttatcctgagcggaaaactccttagactgtacaaggaagtc 3070
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>gb|AY056126.1| Arabidopsis thaliana putative exportin1 protein XPO1 (At5g17020)
            mRNA, complete cds
          Length = 3854

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 507  gcatacagatccttgttatcctgggctgagaactcctttgattgcaccaggaagtc 562
            ||||| ||||| ||||||||||| || || |||||||| || || || ||||||||
Sbjct: 3293 gcatagagatctttgttatcctgagcggaaaactccttagactgtacaaggaagtc 3238
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>emb|AL929414.5| Mouse DNA sequence from clone RP23-222A19 on chromosome 11, complete
              sequence
          Length = 153928

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 473    cctttccttttctctttgta 492
              ||||||||||||||||||||
Sbjct: 151814 cctttccttttctctttgta 151833
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>gb|AC022018.10| Homo sapiens chromosome 10 clone RP11-214N15, complete sequence
          Length = 159617

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   agcacacgcacaaaatgttt 131
             ||||||||||||||||||||
Sbjct: 29581 agcacacgcacaaaatgttt 29600
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>gb|AC023533.6| Homo sapiens chromosome 8, clone RP11-288G19, complete sequence
          Length = 193083

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    cacacagcccacaaaatgct 185
              ||||||||||||||||||||
Sbjct: 107964 cacacagcccacaaaatgct 107983
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 64       tagactaaactaacaattaa 83
                ||||||||||||||||||||
Sbjct: 22248312 tagactaaactaacaattaa 22248331
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>gb|AC040160.4|AC040160 Homo sapiens chromosome 16 clone CTC-277H1, complete sequence
          Length = 209574

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    cccacaaaatgctccaggcc 192
              ||||||||||||||||||||
Sbjct: 182359 cccacaaaatgctccaggcc 182340
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>gb|AC074143.5| Homo sapiens chromosome 16 clone RP11-5A19, complete sequence
          Length = 152952

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    cccacaaaatgctccaggcc 192
              ||||||||||||||||||||
Sbjct: 125090 cccacaaaatgctccaggcc 125109
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>gb|AY995114.1| Homo sapiens tumor necrosis factor receptor 1-associated death domain
            protein (TRADD) gene, complete cds
          Length = 12021

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  cccacaaaatgctccaggcc 192
            ||||||||||||||||||||
Sbjct: 5845 cccacaaaatgctccaggcc 5826
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>gb|AC011603.37| Homo sapiens 12 BAC RP11-386G11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 174400

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 601   aaccaaggagcccatcaaca 620
             ||||||||||||||||||||
Sbjct: 71158 aaccaaggagcccatcaaca 71139
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>dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0070E11
          Length = 142855

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    tagactaaactaacaattaa 83
             ||||||||||||||||||||
Sbjct: 68210 tagactaaactaacaattaa 68229
to top
>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1155_H10
          Length = 140475

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    tagactaaactaacaattaa 83
             ||||||||||||||||||||
Sbjct: 10320 tagactaaactaacaattaa 10339
to top
>emb|Y18469.1|ATHY18469 Arabidopsis thaliana mRNA for Exportin1 (XPO1) protein
          Length = 3768

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 507  gcatacagatccttgttatcctgggctgagaactcctttgattgcaccaggaagtc 562
            ||||| ||||| ||||||||||| || || |||||||| || || || ||||||||
Sbjct: 3220 gcatagagatctttgttatcctgagcggaaaactccttagactgtacaaggaagtc 3165
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>gb|AC151746.3| Mus musculus BAC clone RP23-19M11 from 9, complete sequence
          Length = 168291

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    acaaccaccctggaagaaaa 325
              ||||||||||||||||||||
Sbjct: 166695 acaaccaccctggaagaaaa 166676
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>emb|AJ311614.2|HSA311614 Homo sapiens partial TRADD gene for TNFRSF1A-associated via death
           domain,exon 2 and joined CDS
          Length = 704

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 cccacaaaatgctccaggcc 192
           ||||||||||||||||||||
Sbjct: 520 cccacaaaatgctccaggcc 501
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 440     ggcaatcagccctgggatgg 459
               ||||||||||||||||||||
Sbjct: 2069051 ggcaatcagccctgggatgg 2069070
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 440     ggcaatcagccctgggatgg 459
               ||||||||||||||||||||
Sbjct: 2019424 ggcaatcagccctgggatgg 2019405
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>dbj|AP006709.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT41D19, TM0592,
             complete sequence
          Length = 96561

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 498   gcctcttccgcatacagatccttgttatcctg 529
             |||||||| ||||| ||||| |||||||||||
Sbjct: 76263 gcctcttcagcataaagatctttgttatcctg 76232
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>dbj|AP006701.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT08P04, TM0587,
             complete sequence
          Length = 110885

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 498   gcctcttccgcatacagatccttgttatcctg 529
             |||||||| ||||| ||||| |||||||||||
Sbjct: 36774 gcctcttcagcataaagatctttgttatcctg 36743
to top
>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 440     ggcaatcagccctgggatgg 459
               ||||||||||||||||||||
Sbjct: 1640163 ggcaatcagccctgggatgg 1640182
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 440     ggcaatcagccctgggatgg 459
               ||||||||||||||||||||
Sbjct: 1815909 ggcaatcagccctgggatgg 1815928
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>emb|AL672228.14| Mouse DNA sequence from clone RP24-133C15 on chromosome 11, complete
              sequence
          Length = 162556

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    ctttccttttctctttgtac 493
              ||||||||||||||||||||
Sbjct: 149113 ctttccttttctctttgtac 149132


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,061,395
Number of Sequences: 3902068
Number of extensions: 6061395
Number of successful extensions: 110737
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110319
Number of HSP's gapped (non-prelim): 405
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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