ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9n08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104750.1| Zea mays PCO077049 mRNA sequence 172 6e-40
2ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative... 101 2e-18
3dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
4gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome... 60 7e-06
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 60 7e-06
7ref|NM_103905.2| Arabidopsis thaliana ALATS (ALANYL-TRNA SYNTHET... 42 1.6
8gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genom... 42 1.6
9gb|BT008807.1| Arabidopsis thaliana At1g50200 gene, complete cds 42 1.6
10emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon 42 1.6
11gb|BT008649.1| Arabidopsis thaliana clone RAFL09-78-D07 (R19577)... 42 1.6
12gb|BT002526.1| Arabidopsis thaliana Unknown protein mRNA, comple... 42 1.6
13emb|Z22673.1|ATTRNASYA A.thaliana tRNA synthetase 42 1.6
14emb|Y12555.1|ATY12555 A.thaliana mRNA for alanyl tRNA synthetase 42 1.6
15dbj|AP004895.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.6
16emb|X80345.1|HC28SRIB H.catenoides gene for 28S ribosomal RNA 42 1.6
17ref|XM_512589.1| PREDICTED: Pan troglodytes similar to ZD52F10 p... 40 6.2
18gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.2
19gb|AC107679.19| Mus musculus chromosome 1, clone RP23-256H11, co... 40 6.2
20gb|AY622965.1| Homo sapiens dermokine-beta mRNA, complete cds 40 6.2
21gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
22gb|AY358412.1| Homo sapiens clone DNA59212 KFQG729 (UNQ729) mRNA... 40 6.2
23emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 6.2
24emb|BX511257.16| Zebrafish DNA sequence from clone DKEY-280E21 i... 40 6.2
25gb|BC035311.1| Homo sapiens dermokine, mRNA (cDNA clone MGC:2166... 40 6.2
26gb|AE006030.1| Caulobacter crescentus CB15 section 356 of 359 of... 40 6.2
27ref|NM_033317.2| Homo sapiens dermokine (ZD52F10), transcript va... 40 6.2
28gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 gen... 40 6.2
29dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 6.2
30gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 6.2
31gb|AY789697.1| Homo sapiens dermokine-gamma 2 mRNA, complete cds... 40 6.2
32gb|AY789696.1| Homo sapiens dermokine-gamma 1 mRNA, complete cds... 40 6.2
33gb|AY789695.1| Homo sapiens dermokine-beta mRNA, complete cds 40 6.2
34gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 6.2
35gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 6.2
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
37gb|AC157086.2| Mus musculus BAC clone RP24-79B18 from chromosome... 40 6.2
38gb|AC012074.9| Homo sapiens BAC clone RP11-458N5 from 2, complet... 40 6.2
39gb|U18530.1|SCE9871 Saccharomyces cerevisiae chromosome V cosmid... 40 6.2
40gb|AC138125.1| Homo sapiens chromosome 19 clone LLNLR-228H6, com... 40 6.2
41dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 6.2
42dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 6.2
43emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 6.2
44emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 6.2
45gb|AC002389.1|AC002389 Human DNA from chromosome 19 specific cos... 40 6.2 
>gb|AY104750.1| Zea mays PCO077049 mRNA sequence
          Length = 3244

 Score =  172 bits (87), Expect = 6e-40
 Identities = 177/207 (85%)
 Strand = Plus / Minus

                                                                        
Query: 245  ccattgcctccttgacccgagaagcatcacttccctggccctgggcaagaccattcttgc 304
            ||||||| ||||||| | ||||||| ||||| |||||||||||||| |  || |||||||
Sbjct: 2973 ccattgcttccttgagctgagaagcgtcactcccctggccctgggcgacgccgttcttgc 2914

                                                                        
Query: 305  cgccgcctcctcttcccttgagtggtgcgattgaaggtgtaagccaatccaacaccttga 364
            |||| || ||||||||||||||||| || ||||||||||| ||||| |||||||||||||
Sbjct: 2913 cgccaccgcctcttcccttgagtggcgcaattgaaggtgttagccagtccaacaccttga 2854

                                                                        
Query: 365  agccattgggtgcatccggaggtacgccggcatatataacagccttgtttgatgcctcat 424
            ||||  | || ||||  ||||| || || ||||| ||||| || ||||||||||||||||
Sbjct: 2853 agccgctaggagcattgggaggcacaccagcatagataacggctttgtttgatgcctcat 2794

                                       
Query: 425  ctgtgctgaataccattatcggcaaac 451
            | |||||||||| |||||| |||||||
Sbjct: 2793 cggtgctgaataacattataggcaaac 2767
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>ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative cytosolic tRNA-Ala
            synthetase (OSJNBb0022I16.6), mRNA
          Length = 2085

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                        
Query: 213  cagcttcatcgaagctatctgggtagcaagctccattgcctccttgacccgagaagcatc 272
            ||||||||| ||||||||||||||||||| |||||| || ||||| |   |||| || ||
Sbjct: 2079 cagcttcattgaagctatctgggtagcaacctccatagcttcctttagttgagaggcctc 2020

                                                                        
Query: 273  acttccctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgc 332
            | ||||||||||||||||||  ||||||||||| || |||||  |||| ||||| || ||
Sbjct: 2019 agttccctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgc 1960

                                               
Query: 333  gattgaaggtgtaagccaatccaacaccttgaagc 367
             || || ||||| | ||||||||||||||| ||||
Sbjct: 1959 aatcgatggtgtcaaccaatccaacaccttcaagc 1925
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>dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059M16, full
            insert sequence
          Length = 3214

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                        
Query: 213  cagcttcatcgaagctatctgggtagcaagctccattgcctccttgacccgagaagcatc 272
            ||||||||| ||||||||||||||||||| |||||| || ||||| |   |||| || ||
Sbjct: 3002 cagcttcattgaagctatctgggtagcaacctccatagcttcctttagttgagaggcctc 2943

                                                                        
Query: 273  acttccctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgc 332
            | ||||||||||||||||||  ||||||||||| || |||||  |||| ||||| || ||
Sbjct: 2942 agttccctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgc 2883

                                               
Query: 333  gattgaaggtgtaagccaatccaacaccttgaagc 367
             || || ||||| | ||||||||||||||| ||||
Sbjct: 2882 aatcgatggtgtcaaccaatccaacaccttcaagc 2848
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>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0022I16, complete sequence
          Length = 127068

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                         
Query: 278   cctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgcgattg 337
             |||||||||||||||  ||||||||||| || |||||  |||| ||||| || || || |
Sbjct: 56559 cctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgcaatcg 56500

                                           
Query: 338   aaggtgtaagccaatccaacaccttgaagc 367
             | ||||| | ||||||||||||||| ||||
Sbjct: 56499 atggtgtcaaccaatccaacaccttcaagc 56470



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 213   cagcttcatcgaagctatctgggtagcaagctccattgcctcctt 257
             ||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct: 56729 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 56685
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                           
Query: 278     cctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgcgattg 337
               |||||||||||||||  ||||||||||| || |||||  |||| ||||| || || || |
Sbjct: 5293361 cctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgcaatcg 5293302

                                             
Query: 338     aaggtgtaagccaatccaacaccttgaagc 367
               | ||||| | ||||||||||||||| ||||
Sbjct: 5293301 atggtgtcaaccaatccaacaccttcaagc 5293272



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 213     cagcttcatcgaagctatctgggtagcaagctccattgcctcctt 257
               ||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct: 5293531 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 5293487



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 303      gccgccgcctcctcttccct 322
                ||||||||||||||||||||
Sbjct: 20868267 gccgccgcctcctcttccct 20868248
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                           
Query: 278     cctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgcgattg 337
               |||||||||||||||  ||||||||||| || |||||  |||| ||||| || || || |
Sbjct: 5294148 cctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgcaatcg 5294089

                                             
Query: 338     aaggtgtaagccaatccaacaccttgaagc 367
               | ||||| | ||||||||||||||| ||||
Sbjct: 5294088 atggtgtcaaccaatccaacaccttcaagc 5294059



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 213     cagcttcatcgaagctatctgggtagcaagctccattgcctcctt 257
               ||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct: 5294318 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 5294274



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 303      gccgccgcctcctcttccct 322
                ||||||||||||||||||||
Sbjct: 20879531 gccgccgcctcctcttccct 20879512
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>ref|NM_103905.2| Arabidopsis thaliana ALATS (ALANYL-TRNA SYNTHETASE); ATP binding /
            alanine-tRNA ligase/ nucleic acid binding AT1G50200
            (ALATS) mRNA, complete cds
          Length = 3397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 421  tcatctgtgctgaataccattatcg 445
            |||||||||||||| ||||||||||
Sbjct: 2962 tcatctgtgctgaacaccattatcg 2938
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>gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genomic sequence, complete
             sequence
          Length = 100975

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 421   tcatctgtgctgaataccattatcg 445
             |||||||||||||| ||||||||||
Sbjct: 85119 tcatctgtgctgaacaccattatcg 85095
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>gb|BT008807.1| Arabidopsis thaliana At1g50200 gene, complete cds
          Length = 2868

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 421  tcatctgtgctgaataccattatcg 445
            |||||||||||||| ||||||||||
Sbjct: 2648 tcatctgtgctgaacaccattatcg 2624
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>emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon
          Length = 2858

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 296 cattcttgccgccgcctcctc 316
           |||||||||||||||||||||
Sbjct: 727 cattcttgccgccgcctcctc 747
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>gb|BT008649.1| Arabidopsis thaliana clone RAFL09-78-D07 (R19577) At1g50200 mRNA,
            complete sequence
          Length = 3295

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 421  tcatctgtgctgaataccattatcg 445
            |||||||||||||| ||||||||||
Sbjct: 2892 tcatctgtgctgaacaccattatcg 2868
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>gb|BT002526.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 3172

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 421  tcatctgtgctgaataccattatcg 445
            |||||||||||||| ||||||||||
Sbjct: 2787 tcatctgtgctgaacaccattatcg 2763
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>emb|Z22673.1|ATTRNASYA A.thaliana tRNA synthetase
          Length = 3357

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 421  tcatctgtgctgaataccattatcg 445
            |||||||||||||| ||||||||||
Sbjct: 2962 tcatctgtgctgaacaccattatcg 2938
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>emb|Y12555.1|ATY12555 A.thaliana mRNA for alanyl tRNA synthetase
          Length = 936

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 421 tcatctgtgctgaataccattatcg 445
           |||||||||||||| ||||||||||
Sbjct: 536 tcatctgtgctgaacaccattatcg 512
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>dbj|AP004895.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT02D01, TM0039,
             complete sequence
          Length = 91268

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   ctcagcttcatcgaagctatc 231
             |||||||||||||||||||||
Sbjct: 46883 ctcagcttcatcgaagctatc 46903
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>emb|X80345.1|HC28SRIB H.catenoides gene for 28S ribosomal RNA
          Length = 3655

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 238  gcaagctccattgcctccttg 258
            |||||||||||||||||||||
Sbjct: 2849 gcaagctccattgcctccttg 2869
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>ref|XM_512589.1| PREDICTED: Pan troglodytes similar to ZD52F10 protein (LOC455950),
            mRNA
          Length = 2690

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  ctccattgcctccttgaccc 262
            ||||||||||||||||||||
Sbjct: 1222 ctccattgcctccttgaccc 1203
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
             sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ccattgcctccttgacccga 264
             ||||||||||||||||||||
Sbjct: 21794 ccattgcctccttgacccga 21813
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>gb|AC107679.19| Mus musculus chromosome 1, clone RP23-256H11, complete sequence
          Length = 168732

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    cttccctggccctgggcaag 293
              ||||||||||||||||||||
Sbjct: 100668 cttccctggccctgggcaag 100687
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>gb|AY622965.1| Homo sapiens dermokine-beta mRNA, complete cds
          Length = 1431

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ctccattgcctccttgaccc 262
           ||||||||||||||||||||
Sbjct: 598 ctccattgcctccttgaccc 579
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>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0074P11, complete sequence
          Length = 148753

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   ccgccgcctcctcttccctt 323
             ||||||||||||||||||||
Sbjct: 85544 ccgccgcctcctcttccctt 85525
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>gb|AY358412.1| Homo sapiens clone DNA59212 KFQG729 (UNQ729) mRNA, complete cds
          Length = 1734

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ctccattgcctccttgaccc 262
           ||||||||||||||||||||
Sbjct: 781 ctccattgcctccttgaccc 762
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     aatatgtatgaagaccagtc 197
               ||||||||||||||||||||
Sbjct: 2574907 aatatgtatgaagaccagtc 2574888
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>emb|BX511257.16| Zebrafish DNA sequence from clone DKEY-280E21 in linkage group 14,
             complete sequence
          Length = 166973

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aacactgccatttgataaac 25
             ||||||||||||||||||||
Sbjct: 94789 aacactgccatttgataaac 94770
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>gb|BC035311.1| Homo sapiens dermokine, mRNA (cDNA clone MGC:21664 IMAGE:4752921),
           complete cds
          Length = 1982

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ctccattgcctccttgaccc 262
           ||||||||||||||||||||
Sbjct: 775 ctccattgcctccttgaccc 756
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>gb|AE006030.1| Caulobacter crescentus CB15 section 356 of 359 of the complete genome
          Length = 11452

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  ccctggccctgggcaagacc 296
            ||||||||||||||||||||
Sbjct: 2649 ccctggccctgggcaagacc 2668
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>ref|NM_033317.2| Homo sapiens dermokine (ZD52F10), transcript variant 2, mRNA
          Length = 1982

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ctccattgcctccttgaccc 262
           ||||||||||||||||||||
Sbjct: 775 ctccattgcctccttgaccc 756
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>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete
              sequence
          Length = 178022

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    gccgccgcctcctcttccct 322
              ||||||||||||||||||||
Sbjct: 130666 gccgccgcctcctcttccct 130647
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     aatatgtatgaagaccagtc 197
               ||||||||||||||||||||
Sbjct: 2656844 aatatgtatgaagaccagtc 2656825
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     aatatgtatgaagaccagtc 197
               ||||||||||||||||||||
Sbjct: 2583910 aatatgtatgaagaccagtc 2583891
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>gb|AY789697.1| Homo sapiens dermokine-gamma 2 mRNA, complete cds, alternatively
           spliced
          Length = 1293

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ctccattgcctccttgaccc 262
           ||||||||||||||||||||
Sbjct: 604 ctccattgcctccttgaccc 585
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>gb|AY789696.1| Homo sapiens dermokine-gamma 1 mRNA, complete cds, alternatively
           spliced
          Length = 1257

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ctccattgcctccttgaccc 262
           ||||||||||||||||||||
Sbjct: 604 ctccattgcctccttgaccc 585
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>gb|AY789695.1| Homo sapiens dermokine-beta mRNA, complete cds
          Length = 1437

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ctccattgcctccttgaccc 262
           ||||||||||||||||||||
Sbjct: 604 ctccattgcctccttgaccc 585
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     aatatgtatgaagaccagtc 197
               ||||||||||||||||||||
Sbjct: 2595854 aatatgtatgaagaccagtc 2595835
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     aatatgtatgaagaccagtc 197
               ||||||||||||||||||||
Sbjct: 2647216 aatatgtatgaagaccagtc 2647197
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     ccgccgcctcctcttccctt 323
               ||||||||||||||||||||
Sbjct: 6854590 ccgccgcctcctcttccctt 6854571
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>gb|AC157086.2| Mus musculus BAC clone RP24-79B18 from chromosome 9, complete sequence
          Length = 200734

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 403   acagccttgtttgatgcctcatct 426
             ||||||||||||| ||||||||||
Sbjct: 76961 acagccttgtttgctgcctcatct 76938
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>gb|AC012074.9| Homo sapiens BAC clone RP11-458N5 from 2, complete sequence
          Length = 197652

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   tgccgccgcctcctcttccc 321
             ||||||||||||||||||||
Sbjct: 77341 tgccgccgcctcctcttccc 77360
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>gb|U18530.1|SCE9871 Saccharomyces cerevisiae chromosome V cosmids 9871, 8199, 9867, 9495
             and lambda clones 6693 and 5898
          Length = 62643

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   catcacttccctggccctgg 288
             ||||||||||||||||||||
Sbjct: 22165 catcacttccctggccctgg 22184
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>gb|AC138125.1| Homo sapiens chromosome 19 clone LLNLR-228H6, complete sequence
          Length = 11311

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  ctccattgcctccttgaccc 262
            ||||||||||||||||||||
Sbjct: 4989 ctccattgcctccttgaccc 5008
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     aatatgtatgaagaccagtc 197
               ||||||||||||||||||||
Sbjct: 2595548 aatatgtatgaagaccagtc 2595529
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     aatatgtatgaagaccagtc 197
               ||||||||||||||||||||
Sbjct: 2586418 aatatgtatgaagaccagtc 2586399
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     aatatgtatgaagaccagtc 197
               ||||||||||||||||||||
Sbjct: 2675152 aatatgtatgaagaccagtc 2675133
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     aatatgtatgaagaccagtc 197
               ||||||||||||||||||||
Sbjct: 2523311 aatatgtatgaagaccagtc 2523292
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>gb|AC002389.1|AC002389 Human DNA from chromosome 19 specific cosmid R28461, genomic
            sequence, complete sequence
          Length = 46275

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  ctccattgcctccttgaccc 262
            ||||||||||||||||||||
Sbjct: 2144 ctccattgcctccttgaccc 2163


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,672,669
Number of Sequences: 3902068
Number of extensions: 3672669
Number of successful extensions: 73099
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72836
Number of HSP's gapped (non-prelim): 263
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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