ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9n07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119N09, full insert sequence Length = 1195 Score = 638 bits (322), Expect = e-180 Identities = 529/598 (88%) Strand = Plus / Minus Query: 96 tgactgcttgtctgaatgtaagcacacaagatcactcttccattgcatcaccatcagcta 155 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || | | Sbjct: 1067 tgactgcttgtctgaatgtaagcacacaaaatcactcctccattgcatcaccctctgtca 1008 Query: 156 cctctggcttcagcttcagctgcgtgatctttgtagacaatacctcggtatgccccttgt 215 ||||| |||| ||||||| || || |||||||| ||||| ||| | || ||||||||| Sbjct: 1007 cctctaccttcggcttcagttgtgttatctttgtggacaacaccacagtctgccccttgg 948 Query: 216 tgaagctgtatccctttgaactgacaaaagtcctcgggtttggtaactcgtggtttctca 275 ||||| |||| ||||| ||||| || ||||||| || |||||||||| ||||||||||| Sbjct: 947 tgaagttgtaccccttcgaactaacgtaagtccttggatttggtaactggtggtttctca 888 Query: 276 agtactctgtattccccttggttatcacacaaacatccacgttgctgccacttcccaagt 335 |||||||||| ||||||||||| || || ||||||||||| ||||||||||| ||||||| Sbjct: 887 agtactctgtcttccccttggtgattacgcaaacatccacattgctgccactgcccaagt 828 Query: 336 cattgaagataccagcacggattgcctcggctacaagtgcaattccctcctcccttgtga 395 |||||||||||||| |||| |||||||| || |||||| ||||||||||||||||||| Sbjct: 827 cattgaagataccaccacgaattgcctcagcaacaagttgtattccctcctcccttgtga 768 Query: 396 ggccttctctgtacttcaactcaaacactgacatcgcagcaagggatccagaacccatcg 455 |||||||| |||||||| | |||||||||||||| || |||||||||||||||||||| | Sbjct: 767 ggccttctttgtacttcgattcaaacactgacattgccgcaagggatccagaacccattg 708 Query: 456 tggcaaaaggaagagtatcggtggagccatgcggataaacagtgtgtagatgtggtccag 515 |||||||||||||||| || ||||||||||| |||||||||||||| || ||||| |||| Sbjct: 707 tggcaaaaggaagagtgtccgtggagccatgtggataaacagtgtgcaggtgtggcccag 648 Query: 516 tgacatctactccgccaagaacaagagcagcactgacatgaccttggtagttaaaaaggt 575 | ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 647 taacatctactccaccaagaacaagggcagcactgacatgaccttggtagctaaaaaggt 588 Query: 576 gggtcttcagtagtgtaagagcggttacaactcttgactcacggctagtagcataacggt 635 | | |||||||| |||||||| |||||||||||| |||||||| | ||| |||||||||| Sbjct: 587 gcgacttcagtaatgtaagagaggttacaactctggactcacgaccagttgcataacggt 528 Query: 636 gaagttgtagctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttcc 693 ||||||| |||||||| |||||||||||||| |||||||| |||||||| |||||||| Sbjct: 527 gaagttgaagctgggaactgaccatatctgttacagcctcagtgtcagcggcagttcc 470
>dbj|AK058440.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F11, full insert sequence Length = 750 Score = 638 bits (322), Expect = e-180 Identities = 529/598 (88%) Strand = Plus / Minus Query: 96 tgactgcttgtctgaatgtaagcacacaagatcactcttccattgcatcaccatcagcta 155 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || | | Sbjct: 634 tgactgcttgtctgaatgtaagcacacaaaatcactcctccattgcatcaccctctgtca 575 Query: 156 cctctggcttcagcttcagctgcgtgatctttgtagacaatacctcggtatgccccttgt 215 ||||| |||| ||||||| || || |||||||| ||||| ||| | || ||||||||| Sbjct: 574 cctctaccttcggcttcagttgtgttatctttgtggacaacaccacagtctgccccttgg 515 Query: 216 tgaagctgtatccctttgaactgacaaaagtcctcgggtttggtaactcgtggtttctca 275 ||||| |||| ||||| ||||| || ||||||| || |||||||||| ||||||||||| Sbjct: 514 tgaagttgtaccccttcgaactaacgtaagtccttggatttggtaactggtggtttctca 455 Query: 276 agtactctgtattccccttggttatcacacaaacatccacgttgctgccacttcccaagt 335 |||||||||| ||||||||||| || || ||||||||||| ||||||||||| ||||||| Sbjct: 454 agtactctgtcttccccttggtgattacgcaaacatccacattgctgccactgcccaagt 395 Query: 336 cattgaagataccagcacggattgcctcggctacaagtgcaattccctcctcccttgtga 395 |||||||||||||| |||| |||||||| || |||||| ||||||||||||||||||| Sbjct: 394 cattgaagataccaccacgaattgcctcagcaacaagttgtattccctcctcccttgtga 335 Query: 396 ggccttctctgtacttcaactcaaacactgacatcgcagcaagggatccagaacccatcg 455 |||||||| |||||||| | |||||||||||||| || |||||||||||||||||||| | Sbjct: 334 ggccttctttgtacttcgattcaaacactgacattgccgcaagggatccagaacccattg 275 Query: 456 tggcaaaaggaagagtatcggtggagccatgcggataaacagtgtgtagatgtggtccag 515 |||||||||||||||| || ||||||||||| |||||||||||||| || ||||| |||| Sbjct: 274 tggcaaaaggaagagtgtccgtggagccatgtggataaacagtgtgcaggtgtggcccag 215 Query: 516 tgacatctactccgccaagaacaagagcagcactgacatgaccttggtagttaaaaaggt 575 | ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 214 taacatctactccaccaagaacaagggcagcactgacatgaccttggtagctaaaaaggt 155 Query: 576 gggtcttcagtagtgtaagagcggttacaactcttgactcacggctagtagcataacggt 635 | | |||||||| |||||||| |||||||||||| |||||||| | ||| |||||||||| Sbjct: 154 gcgacttcagtaatgtaagagaggttacaactctggactcacgaccagttgcataacggt 95 Query: 636 gaagttgtagctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttcc 693 ||||||| |||||||| |||||||||||||| |||||||| |||||||| |||||||| Sbjct: 94 gaagttgaagctgggaactgaccatatctgttacagcctcagtgtcagcggcagttcc 37
>dbj|AB026564.1| Oryza sativa (japonica cultivar-group) OsPBB1 mRNA for beta 2 subunit of 20S proteasome, complete cds Length = 1122 Score = 638 bits (322), Expect = e-180 Identities = 529/598 (88%) Strand = Plus / Minus Query: 96 tgactgcttgtctgaatgtaagcacacaagatcactcttccattgcatcaccatcagcta 155 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || | | Sbjct: 960 tgactgcttgtctgaatgtaagcacacaaaatcactcctccattgcatcaccctctgtca 901 Query: 156 cctctggcttcagcttcagctgcgtgatctttgtagacaatacctcggtatgccccttgt 215 ||||| |||| ||||||| || || |||||||| ||||| ||| | || ||||||||| Sbjct: 900 cctctaccttcggcttcagttgtgttatctttgtggacaacaccacagtctgccccttgg 841 Query: 216 tgaagctgtatccctttgaactgacaaaagtcctcgggtttggtaactcgtggtttctca 275 ||||| |||| ||||| ||||| || ||||||| || |||||||||| ||||||||||| Sbjct: 840 tgaagttgtaccccttcgaactaacgtaagtccttggatttggtaactggtggtttctca 781 Query: 276 agtactctgtattccccttggttatcacacaaacatccacgttgctgccacttcccaagt 335 |||||||||| ||||||||||| || || ||||||||||| ||||||||||| ||||||| Sbjct: 780 agtactctgtcttccccttggtgattacgcaaacatccacattgctgccactgcccaagt 721 Query: 336 cattgaagataccagcacggattgcctcggctacaagtgcaattccctcctcccttgtga 395 |||||||||||||| |||| |||||||| || |||||| ||||||||||||||||||| Sbjct: 720 cattgaagataccaccacgaattgcctcagcaacaagttgtattccctcctcccttgtga 661 Query: 396 ggccttctctgtacttcaactcaaacactgacatcgcagcaagggatccagaacccatcg 455 |||||||| |||||||| | |||||||||||||| || |||||||||||||||||||| | Sbjct: 660 ggccttctttgtacttcgattcaaacactgacattgccgcaagggatccagaacccattg 601 Query: 456 tggcaaaaggaagagtatcggtggagccatgcggataaacagtgtgtagatgtggtccag 515 |||||||||||||||| || ||||||||||| |||||||||||||| || ||||| |||| Sbjct: 600 tggcaaaaggaagagtgtccgtggagccatgtggataaacagtgtgcaggtgtggcccag 541 Query: 516 tgacatctactccgccaagaacaagagcagcactgacatgaccttggtagttaaaaaggt 575 | ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 540 taacatctactccaccaagaacaagggcagcactgacatgaccttggtagctaaaaaggt 481 Query: 576 gggtcttcagtagtgtaagagcggttacaactcttgactcacggctagtagcataacggt 635 | | |||||||| |||||||| |||||||||||| |||||||| | ||| |||||||||| Sbjct: 480 gcgacttcagtaatgtaagagaggttacaactctggactcacgaccagttgcataacggt 421 Query: 636 gaagttgtagctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttcc 693 ||||||| |||||||| |||||||||||||| |||||||| |||||||| |||||||| Sbjct: 420 gaagttgaagctgggaactgaccatatctgttacagcctcagtgtcagcggcagttcc 363
>ref|XM_476072.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 819 Score = 585 bits (295), Expect = e-164 Identities = 499/567 (88%) Strand = Plus / Minus Query: 127 tcactcttccattgcatcaccatcagctacctctggcttcagcttcagctgcgtgatctt 186 |||||| |||||||||||||| || | |||||| |||| ||||||| || || ||||| Sbjct: 819 tcactcctccattgcatcaccctctgtcacctctaccttcggcttcagttgtgttatctt 760 Query: 187 tgtagacaatacctcggtatgccccttgttgaagctgtatccctttgaactgacaaaagt 246 ||| ||||| ||| | || ||||||||| ||||| |||| ||||| ||||| || |||| Sbjct: 759 tgtggacaacaccacagtctgccccttggtgaagttgtaccccttcgaactaacgtaagt 700 Query: 247 cctcgggtttggtaactcgtggtttctcaagtactctgtattccccttggttatcacaca 306 ||| || |||||||||| ||||||||||||||||||||| ||||||||||| || || || Sbjct: 699 ccttggatttggtaactggtggtttctcaagtactctgtcttccccttggtgattacgca 640 Query: 307 aacatccacgttgctgccacttcccaagtcattgaagataccagcacggattgcctcggc 366 ||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||| || Sbjct: 639 aacatccacattgctgccactgcccaagtcattgaagataccaccacgaattgcctcagc 580 Query: 367 tacaagtgcaattccctcctcccttgtgaggccttctctgtacttcaactcaaacactga 426 |||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||| Sbjct: 579 aacaagttgtattccctcctcccttgtgaggccttctttgtacttcgattcaaacactga 520 Query: 427 catcgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcggtggagccatg 486 ||| || |||||||||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct: 519 cattgccgcaagggatccagaacccattgtggcaaaaggaagagtgtccgtggagccatg 460 Query: 487 cggataaacagtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagc 546 |||||||||||||| || ||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct: 459 tggataaacagtgtgcaggtgtggcccagtaacatctactccaccaagaacaagggcagc 400 Query: 547 actgacatgaccttggtagttaaaaaggtgggtcttcagtagtgtaagagcggttacaac 606 ||||||||||||||||||| |||||||||| | |||||||| |||||||| ||||||||| Sbjct: 399 actgacatgaccttggtagctaaaaaggtgcgacttcagtaatgtaagagaggttacaac 340 Query: 607 tcttgactcacggctagtagcataacggtgaagttgtagctgggagctgaccatatctgt 666 ||| |||||||| | ||| ||||||||||||||||| |||||||| |||||||||||||| Sbjct: 339 tctggactcacgaccagttgcataacggtgaagttgaagctgggaactgaccatatctgt 280 Query: 667 cacagcctctgtgtcagcagcagttcc 693 |||||||| |||||||| |||||||| Sbjct: 279 tacagcctcagtgtcagcggcagttcc 253
>gb|BT017621.1| Zea mays clone EL01N0435E12.c mRNA sequence Length = 1144 Score = 434 bits (219), Expect = e-118 Identities = 441/515 (85%) Strand = Plus / Minus Query: 179 gtgatctttgtagacaatacctcggtatgccccttgttgaagctgtatccctttgaactg 238 |||| ||||| ||||| |||||| || ||||||||| |||| ||||||||||||||||| Sbjct: 866 gtgacctttgaagacagtacctcagtctgccccttggtgaaactgtatccctttgaacta 807 Query: 239 acaaaagtcctcgggtttggtaactcgtggtttctcaagtactctgtattccccttggtt 298 || ||||||| || || || |||| ||||||||||||||| ||||| |||||||||||| Sbjct: 806 gcataagtcctgggattcggcaactggtggtttctcaagtattctgtcttccccttggtt 747 Query: 299 atcacacaaacatccacgttgctgccacttcccaagtcattgaagataccagcacggatt 358 ||||| || || ||||||||||| ||||| |||||||||||||| |||||||||| |||| Sbjct: 746 atcacgcagacgtccacgttgctcccactacccaagtcattgaaaataccagcacagatt 687 Query: 359 gcctcggctacaagtgcaattccctcctcccttgtgaggccttctctgtacttcaactca 418 || ||| |||| |||||||||||||| || ||||||||| |||||||| | ||| Sbjct: 686 gcttcgcacacaatctgtattccctcctccctagtaaggccttctttgtacttcgattca 627 Query: 419 aacactgacatcgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcggtg 478 ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 626 aacactgacattgcagcaagagaaccagagcccatggtggcaaaaggaagagtatcagtg 567 Query: 479 gagccatgcggataaacagtgtgtagatgtggtccagtgacatctactccgccaagaaca 538 || || || |||||||||||||||| |||||| ||||| ||| ||||| ||||||||| Sbjct: 566 gacccgtgtggataaacagtgtgtaaatgtggcccagtacaatccactccaccaagaaca 507 Query: 539 agagcagcactgacatgaccttggtagttaaaaaggtgggtcttcagtagtgtaagagcg 598 || |||||||||||||| ||||| || || || ||||| | |||||||||||||||||| Sbjct: 506 agggcagcactgacatggccttgatacttgaagaggtgtgacttcagtagtgtaagagca 447 Query: 599 gttacaactcttgactcacggctagtagcataacggtgaagttgtagctgggagctgacc 658 |||||||||||||| || |||| || |||||||||||||| |||||||||||||| ||| Sbjct: 446 gttacaactcttgattcgcggcccgttgcataacggtgaagctgtagctgggagctcacc 387 Query: 659 atatctgtcacagcctctgtgtcagcagcagttcc 693 |||||||| || ||||| ||||| ||||||||||| Sbjct: 386 atatctgtaacggcctccgtgtccgcagcagttcc 352
>gb|AY105052.1| Zea mays PCO138078 mRNA sequence Length = 1368 Score = 434 bits (219), Expect = e-118 Identities = 441/515 (85%) Strand = Plus / Minus Query: 179 gtgatctttgtagacaatacctcggtatgccccttgttgaagctgtatccctttgaactg 238 |||| ||||| ||||| |||||| || ||||||||| |||| ||||||||||||||||| Sbjct: 960 gtgacctttgaagacagtacctcagtctgccccttggtgaaactgtatccctttgaacta 901 Query: 239 acaaaagtcctcgggtttggtaactcgtggtttctcaagtactctgtattccccttggtt 298 || ||||||| || || || |||| ||||||||||||||| ||||| |||||||||||| Sbjct: 900 gcataagtcctgggattcggcaactggtggtttctcaagtattctgtcttccccttggtt 841 Query: 299 atcacacaaacatccacgttgctgccacttcccaagtcattgaagataccagcacggatt 358 ||||| || || ||||||||||| ||||| |||||||||||||| |||||||||| |||| Sbjct: 840 atcacgcagacgtccacgttgctcccactacccaagtcattgaaaataccagcacagatt 781 Query: 359 gcctcggctacaagtgcaattccctcctcccttgtgaggccttctctgtacttcaactca 418 || ||| |||| |||||||||||||| || ||||||||| |||||||| | ||| Sbjct: 780 gcttcgcacacaatctgtattccctcctccctagtaaggccttctttgtacttcgattca 721 Query: 419 aacactgacatcgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcggtg 478 ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 720 aacactgacattgcagcaagagaaccagagcccatggtggcaaaaggaagagtatcagtg 661 Query: 479 gagccatgcggataaacagtgtgtagatgtggtccagtgacatctactccgccaagaaca 538 || || || |||||||||||||||| |||||| ||||| ||| ||||| ||||||||| Sbjct: 660 gacccgtgtggataaacagtgtgtaaatgtggcccagtacaatccactccaccaagaaca 601 Query: 539 agagcagcactgacatgaccttggtagttaaaaaggtgggtcttcagtagtgtaagagcg 598 || |||||||||||||| ||||| || || || ||||| | |||||||||||||||||| Sbjct: 600 agggcagcactgacatggccttgatacttgaagaggtgtgacttcagtagtgtaagagca 541 Query: 599 gttacaactcttgactcacggctagtagcataacggtgaagttgtagctgggagctgacc 658 |||||||||||||| || |||| || |||||||||||||| |||||||||||||| ||| Sbjct: 540 gttacaactcttgattcgcggcccgttgcataacggtgaagctgtagctgggagctcacc 481 Query: 659 atatctgtcacagcctctgtgtcagcagcagttcc 693 |||||||| || ||||| ||||| ||||||||||| Sbjct: 480 atatctgtaacggcctccgtgtccgcagcagttcc 446
>gb|AY110243.1| Zea mays CL2786_1 mRNA sequence Length = 1029 Score = 392 bits (198), Expect = e-106 Identities = 433/510 (84%), Gaps = 1/510 (0%) Strand = Plus / Plus Query: 179 gtgatctttgtagacaatacctcggtatgccccttgttgaagctgtatccctttgaactg 238 |||||||||| ||||| ||||| || ||||||||| ||||||| |||||||||||||| Sbjct: 467 gtgatctttgcggacaacacctcagtctgccccttggtgaagctatatccctttgaacta 526 Query: 239 acaaaagtcctcgggtttggtaactcgtggtttctcaagtactctgtattccccttggtt 298 ||| |||| || || || || |||| ||||||||||||||| ||||| |||||||||||| Sbjct: 527 acataagttctgggattcggcaactggtggtttctcaagtattctgtcttccccttggtt 586 Query: 299 atcacacaaacatccacgttgctgccacttcccaagtcattgaagataccagcacggatt 358 ||||| || |||||||| ||||| ||||| |||||||||||||||||||| |||| ||| Sbjct: 587 atcacgcagacatccacattgcttccactacccaagtcattgaagatacctgcacatatt 646 Query: 359 gcctcggctacaagtgcaattccctcctcccttgtgaggccttctctgtacttcaactca 418 || || | || ||| |||||||| ||||| |||||||| ||| | |||||| | ||| Sbjct: 647 gcttctgacaccagttgtattccctcttccctagtgaggccctctttatacttcgattca 706 Query: 419 aacactgacatcgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcggtg 478 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 707 aacactgacattgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcagtg 766 Query: 479 gagccatgcggataaacagtgtgtagatgtggtccagtgacatctactccgccaagaaca 538 ||||| || |||||||||||||| ||||| |||||||| ||| ||||| ||||||||| Sbjct: 767 gagccgtgtggataaacagtgtgaagatgcggtccagtacaatccactccaccaagaaca 826 Query: 539 agagcagcactgacatgaccttggtagttaaaaaggtgggtcttcagtagtgtaagagcg 598 || |||||||||||||| ||||| || |||| || || | |||||| ||||||||||| Sbjct: 827 agggcagcactgacatggccttgatacctaaagagatgtgacttcagcagtgtaagagca 886 Query: 599 gttacaactcttgactcacggctagtagcataacggtgaagttgtagctgggagctgacc 658 ||||| ||||| || || || | || || |||||||| || |||||||| ||||||||| Sbjct: 887 gttacgactctagattcgcgacccgttgcgtaacggtgcagctgtagctgcgagctgacc 946 Query: 659 atatctgtcacagcctctgtgtcagcagca 688 || ||||| |||||||| |||||||||||| Sbjct: 947 atgtctgt-acagcctcagtgtcagcagca 975
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 137 bits (69), Expect = 5e-29 Identities = 96/105 (91%) Strand = Plus / Minus Query: 391 tgtgaggccttctctgtacttcaactcaaacactgacatcgcagcaagggatccagaacc 450 ||||||||||||| |||||||| | |||||||||||||| || ||||||||||||||||| Sbjct: 5279388 tgtgaggccttctttgtacttcgattcaaacactgacattgccgcaagggatccagaacc 5279329 Query: 451 catcgtggcaaaaggaagagtatcggtggagccatgcggataaac 495 ||| ||||||||||||||||| || ||||||||||| |||||||| Sbjct: 5279328 cattgtggcaaaaggaagagtgtccgtggagccatgtggataaac 5279284 Score = 115 bits (58), Expect = 2e-22 Identities = 88/98 (89%) Strand = Plus / Minus Query: 567 taaaaaggtgggtcttcagtagtgtaagagcggttacaactcttgactcacggctagtag 626 |||||||||| | |||||||| |||||||| |||||||||||| |||||||| | ||| | Sbjct: 5279018 taaaaaggtgcgacttcagtaatgtaagagaggttacaactctggactcacgaccagttg 5278959 Query: 627 cataacggtgaagttgtagctgggagctgaccatatct 664 |||||||||||||||| |||||||| |||||||||||| Sbjct: 5278958 cataacggtgaagttgaagctgggaactgaccatatct 5278921 Score = 103 bits (52), Expect = 8e-19 Identities = 88/100 (88%) Strand = Plus / Minus Query: 291 ccttggttatcacacaaacatccacgttgctgccacttcccaagtcattgaagataccag 350 ||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 5279630 ccttggtgattacgcaaacatccacattgctgccactgcccaagtcattgaagataccac 5279571 Query: 351 cacggattgcctcggctacaagtgcaattccctcctccct 390 |||| |||||||| || |||||| |||||||||||||| Sbjct: 5279570 cacgaattgcctcagcaacaagttgtattccctcctccct 5279531 Score = 99.6 bits (50), Expect = 1e-17 Identities = 71/78 (91%) Strand = Plus / Minus Query: 494 acagtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagcactgaca 553 |||||||| || ||||| ||||| ||||||||||| ||||||||||| |||||||||||| Sbjct: 5279201 acagtgtgcaggtgtggcccagtaacatctactccaccaagaacaagggcagcactgaca 5279142 Query: 554 tgaccttggtagttaaaa 571 |||||||||||| ||||| Sbjct: 5279141 tgaccttggtagctaaaa 5279124 Score = 95.6 bits (48), Expect = 2e-16 Identities = 87/100 (87%) Strand = Plus / Minus Query: 96 tgactgcttgtctgaatgtaagcacacaagatcactcttccattgcatcaccatcagcta 155 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || | | Sbjct: 5280342 tgactgcttgtctgaatgtaagcacacaaaatcactcctccattgcatcaccctctgtca 5280283 Query: 156 cctctggcttcagcttcagctgcgtgatctttgtagacaa 195 ||||| |||| ||||||| || || |||||||| ||||| Sbjct: 5280282 cctctaccttcggcttcagttgtgttatctttgtggacaa 5280243 Score = 87.7 bits (44), Expect = 5e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 206 tgccccttgttgaagctgtatccctttgaactgacaaaagtcctcgggtttggtaactcg 265 ||||||||| ||||| |||| ||||| ||||| || ||||||| || |||||||||| | Sbjct: 5280147 tgccccttggtgaagttgtaccccttcgaactaacgtaagtccttggatttggtaactgg 5280088 Query: 266 tggtttctcaagtactctgtattcccct 293 |||||||||||||||||||| ||||||| Sbjct: 5280087 tggtttctcaagtactctgtcttcccct 5280060
>gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1097_A12, complete sequence Length = 88725 Score = 137 bits (69), Expect = 5e-29 Identities = 96/105 (91%) Strand = Plus / Minus Query: 391 tgtgaggccttctctgtacttcaactcaaacactgacatcgcagcaagggatccagaacc 450 ||||||||||||| |||||||| | |||||||||||||| || ||||||||||||||||| Sbjct: 16089 tgtgaggccttctttgtacttcgattcaaacactgacattgccgcaagggatccagaacc 16030 Query: 451 catcgtggcaaaaggaagagtatcggtggagccatgcggataaac 495 ||| ||||||||||||||||| || ||||||||||| |||||||| Sbjct: 16029 cattgtggcaaaaggaagagtgtccgtggagccatgtggataaac 15985 Score = 115 bits (58), Expect = 2e-22 Identities = 88/98 (89%) Strand = Plus / Minus Query: 567 taaaaaggtgggtcttcagtagtgtaagagcggttacaactcttgactcacggctagtag 626 |||||||||| | |||||||| |||||||| |||||||||||| |||||||| | ||| | Sbjct: 15719 taaaaaggtgcgacttcagtaatgtaagagaggttacaactctggactcacgaccagttg 15660 Query: 627 cataacggtgaagttgtagctgggagctgaccatatct 664 |||||||||||||||| |||||||| |||||||||||| Sbjct: 15659 cataacggtgaagttgaagctgggaactgaccatatct 15622 Score = 103 bits (52), Expect = 8e-19 Identities = 88/100 (88%) Strand = Plus / Minus Query: 291 ccttggttatcacacaaacatccacgttgctgccacttcccaagtcattgaagataccag 350 ||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 16331 ccttggtgattacgcaaacatccacattgctgccactgcccaagtcattgaagataccac 16272 Query: 351 cacggattgcctcggctacaagtgcaattccctcctccct 390 |||| |||||||| || |||||| |||||||||||||| Sbjct: 16271 cacgaattgcctcagcaacaagttgtattccctcctccct 16232 Score = 99.6 bits (50), Expect = 1e-17 Identities = 71/78 (91%) Strand = Plus / Minus Query: 494 acagtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagcactgaca 553 |||||||| || ||||| ||||| ||||||||||| ||||||||||| |||||||||||| Sbjct: 15902 acagtgtgcaggtgtggcccagtaacatctactccaccaagaacaagggcagcactgaca 15843 Query: 554 tgaccttggtagttaaaa 571 |||||||||||| ||||| Sbjct: 15842 tgaccttggtagctaaaa 15825 Score = 95.6 bits (48), Expect = 2e-16 Identities = 87/100 (87%) Strand = Plus / Minus Query: 96 tgactgcttgtctgaatgtaagcacacaagatcactcttccattgcatcaccatcagcta 155 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || | | Sbjct: 17043 tgactgcttgtctgaatgtaagcacacaaaatcactcctccattgcatcaccctctgtca 16984 Query: 156 cctctggcttcagcttcagctgcgtgatctttgtagacaa 195 ||||| |||| ||||||| || || |||||||| ||||| Sbjct: 16983 cctctaccttcggcttcagttgtgttatctttgtggacaa 16944 Score = 87.7 bits (44), Expect = 5e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 206 tgccccttgttgaagctgtatccctttgaactgacaaaagtcctcgggtttggtaactcg 265 ||||||||| ||||| |||| ||||| ||||| || ||||||| || |||||||||| | Sbjct: 16848 tgccccttggtgaagttgtaccccttcgaactaacgtaagtccttggatttggtaactgg 16789 Query: 266 tggtttctcaagtactctgtattcccct 293 |||||||||||||||||||| ||||||| Sbjct: 16788 tggtttctcaagtactctgtcttcccct 16761
>ref|NM_180310.1| Arabidopsis thaliana PBB1; endopeptidase/ peptidase/ threonine endopeptidase AT3G27430 (PBB1) transcript variant AT3G27430.1 mRNA, complete cds Length = 1228 Score = 91.7 bits (46), Expect = 3e-15 Identities = 154/190 (81%) Strand = Plus / Minus Query: 376 aattccctcctcccttgtgaggccttctctgtacttcaactcaaacactgacatcgcagc 435 |||||| || ||||| || ||||||||| | ||||| ||||||||| ||||| ||||| Sbjct: 691 aattccttcatccctagttaggccttctttatactttgcctcaaacacagacatagcagc 632 Query: 436 aagggatccagaacccatcgtggcaaaaggaagagtatcggtggagccatgcggataaac 495 ||| || || |||||||| ||||| || |||||||| || || || || || || || | Sbjct: 631 aagagaacccgaacccattgtggcgaatggaagagtgtcagttgaaccgtgtgggtatat 572 Query: 496 agtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagcactgacatg 555 ||| || |||||||| ||||||| ||| ||||| || || |||||||||||| |||||| Sbjct: 571 agtatgcagatgtggaccagtgatatcaactccaccgagtacaagagcagcagagacatg 512 Query: 556 accttggtag 565 |||||||||| Sbjct: 511 accttggtag 502 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 311 tccacgttgctgccacttcccaagtcattgaagatacc 348 ||||||||||| ||||| |||| ||||||||| ||||| Sbjct: 756 tccacgttgctaccactacccaggtcattgaatatacc 719 Score = 40.1 bits (20), Expect = 9.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || || ||||| |||||||| ||||| Sbjct: 423 agctgtgagctgaccatatcagtgactgcttcagtatcagccgcagttcctgcacc 368
>ref|NM_113658.2| Arabidopsis thaliana PBB1; endopeptidase/ peptidase/ threonine endopeptidase AT3G27430 (PBB1) transcript variant AT3G27430.2 mRNA, complete cds Length = 1230 Score = 91.7 bits (46), Expect = 3e-15 Identities = 154/190 (81%) Strand = Plus / Minus Query: 376 aattccctcctcccttgtgaggccttctctgtacttcaactcaaacactgacatcgcagc 435 |||||| || ||||| || ||||||||| | ||||| ||||||||| ||||| ||||| Sbjct: 691 aattccttcatccctagttaggccttctttatactttgcctcaaacacagacatagcagc 632 Query: 436 aagggatccagaacccatcgtggcaaaaggaagagtatcggtggagccatgcggataaac 495 ||| || || |||||||| ||||| || |||||||| || || || || || || || | Sbjct: 631 aagagaacccgaacccattgtggcgaatggaagagtgtcagttgaaccgtgtgggtatat 572 Query: 496 agtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagcactgacatg 555 ||| || |||||||| ||||||| ||| ||||| || || |||||||||||| |||||| Sbjct: 571 agtatgcagatgtggaccagtgatatcaactccaccgagtacaagagcagcagagacatg 512 Query: 556 accttggtag 565 |||||||||| Sbjct: 511 accttggtag 502 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 311 tccacgttgctgccacttcccaagtcattgaagatacc 348 ||||||||||| ||||| |||| ||||||||| ||||| Sbjct: 756 tccacgttgctaccactacccaggtcattgaatatacc 719 Score = 40.1 bits (20), Expect = 9.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || || ||||| |||||||| ||||| Sbjct: 423 agctgtgagctgaccatatcagtgactgcttcagtatcagccgcagttcctgcacc 368
>emb|Y13178.1|ATY13178 Arabidopsis thaliana mRNA for proteasome subunit prcfa Length = 1068 Score = 91.7 bits (46), Expect = 3e-15 Identities = 154/190 (81%) Strand = Plus / Minus Query: 376 aattccctcctcccttgtgaggccttctctgtacttcaactcaaacactgacatcgcagc 435 |||||| || ||||| || ||||||||| | ||||| ||||||||| ||||| ||||| Sbjct: 593 aattccttcatccctagttaggccttctttatactttgcctcaaacacagacatagcagc 534 Query: 436 aagggatccagaacccatcgtggcaaaaggaagagtatcggtggagccatgcggataaac 495 ||| || || |||||||| ||||| || |||||||| || || || || || || || | Sbjct: 533 aagagaacccgaacccattgtggcgaatggaagagtgtcagttgaaccgtgtgggtatat 474 Query: 496 agtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagcactgacatg 555 ||| || |||||||| ||||||| ||| ||||| || || |||||||||||| |||||| Sbjct: 473 agtatgcagatgtggaccagtgatatcaactccaccgagtacaagagcagcagagacatg 414 Query: 556 accttggtag 565 |||||||||| Sbjct: 413 accttggtag 404 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 311 tccacgttgctgccacttcccaagtcattgaagatacc 348 ||||||||||| ||||| |||| ||||||||| ||||| Sbjct: 658 tccacgttgctaccactacccaggtcattgaatatacc 621 Score = 40.1 bits (20), Expect = 9.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || || ||||| |||||||| ||||| Sbjct: 325 agctgtgagctgaccatatcagtgactgcttcagtatcagccgcagttcctgcacc 270
>gb|BT006306.1| Arabidopsis thaliana At3g27430 mRNA, complete cds Length = 822 Score = 91.7 bits (46), Expect = 3e-15 Identities = 154/190 (81%) Strand = Plus / Minus Query: 376 aattccctcctcccttgtgaggccttctctgtacttcaactcaaacactgacatcgcagc 435 |||||| || ||||| || ||||||||| | ||||| ||||||||| ||||| ||||| Sbjct: 573 aattccttcatccctagttaggccttctttatactttgcctcaaacacagacatagcagc 514 Query: 436 aagggatccagaacccatcgtggcaaaaggaagagtatcggtggagccatgcggataaac 495 ||| || || |||||||| ||||| || |||||||| || || || || || || || | Sbjct: 513 aagagaacccgaacccattgtggcgaatggaagagtgtcagttgaaccgtgtgggtatat 454 Query: 496 agtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagcactgacatg 555 ||| || |||||||| ||||||| ||| ||||| || || |||||||||||| |||||| Sbjct: 453 agtatgcagatgtggaccagtgatatcaactccaccgagtacaagagcagcagagacatg 394 Query: 556 accttggtag 565 |||||||||| Sbjct: 393 accttggtag 384 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 311 tccacgttgctgccacttcccaagtcattgaagatacc 348 ||||||||||| ||||| |||| ||||||||| ||||| Sbjct: 638 tccacgttgctaccactacccaggtcattgaatatacc 601 Score = 40.1 bits (20), Expect = 9.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || || ||||| |||||||| ||||| Sbjct: 305 agctgtgagctgaccatatcagtgactgcttcagtatcagccgcagttcctgcacc 250
>gb|BT003339.1| Arabidopsis thaliana 20S proteasome beta subunit (PBB1) (At3g27430) mRNA, complete cds Length = 1067 Score = 91.7 bits (46), Expect = 3e-15 Identities = 154/190 (81%) Strand = Plus / Minus Query: 376 aattccctcctcccttgtgaggccttctctgtacttcaactcaaacactgacatcgcagc 435 |||||| || ||||| || ||||||||| | ||||| ||||||||| ||||| ||||| Sbjct: 691 aattccttcatccctagttaggccttctttatactttgcctcaaacacagacatagcagc 632 Query: 436 aagggatccagaacccatcgtggcaaaaggaagagtatcggtggagccatgcggataaac 495 ||| || || |||||||| ||||| || |||||||| || || || || || || || | Sbjct: 631 aagagaacccgaacccattgtggcgaatggaagagtgtcagttgaaccgtgtgggtatat 572 Query: 496 agtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagcactgacatg 555 ||| || |||||||| ||||||| ||| ||||| || || |||||||||||| |||||| Sbjct: 571 agtatgcagatgtggaccagtgatatcaactccaccgagtacaagagcagcagagacatg 512 Query: 556 accttggtag 565 |||||||||| Sbjct: 511 accttggtag 502 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 311 tccacgttgctgccacttcccaagtcattgaagatacc 348 ||||||||||| ||||| |||| ||||||||| ||||| Sbjct: 756 tccacgttgctaccactacccaggtcattgaatatacc 719 Score = 40.1 bits (20), Expect = 9.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || || ||||| |||||||| ||||| Sbjct: 423 agctgtgagctgaccatatcagtgactgcttcagtatcagccgcagttcctgcacc 368
>gb|AF043530.1|AF043530 Arabidopsis thaliana 20S proteasome beta subunit PBB1 (PBB1) mRNA, complete cds Length = 1068 Score = 91.7 bits (46), Expect = 3e-15 Identities = 154/190 (81%) Strand = Plus / Minus Query: 376 aattccctcctcccttgtgaggccttctctgtacttcaactcaaacactgacatcgcagc 435 |||||| || ||||| || ||||||||| | ||||| ||||||||| ||||| ||||| Sbjct: 593 aattccttcatccctagttaggccttctttatactttgcctcaaacacagacatagcagc 534 Query: 436 aagggatccagaacccatcgtggcaaaaggaagagtatcggtggagccatgcggataaac 495 ||| || || |||||||| ||||| || |||||||| || || || || || || || | Sbjct: 533 aagagaacccgaacccattgtggcgaatggaagagtgtcagttgaaccgtgtgggtatat 474 Query: 496 agtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagcactgacatg 555 ||| || |||||||| ||||||| ||| ||||| || || |||||||||||| |||||| Sbjct: 473 agtatgcagatgtggaccagtgatatcaactccaccgagtacaagagcagcagagacatg 414 Query: 556 accttggtag 565 |||||||||| Sbjct: 413 accttggtag 404 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 311 tccacgttgctgccacttcccaagtcattgaagatacc 348 ||||||||||| ||||| |||| ||||||||| ||||| Sbjct: 658 tccacgttgctaccactacccaggtcattgaatatacc 621 Score = 40.1 bits (20), Expect = 9.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || || ||||| |||||||| ||||| Sbjct: 325 agctgtgagctgaccatatcagtgactgcttcagtatcagccgcagttcctgcacc 270
>gb|AY086464.1| Arabidopsis thaliana clone 25264 mRNA, complete sequence Length = 1120 Score = 83.8 bits (42), Expect = 7e-13 Identities = 153/190 (80%) Strand = Plus / Minus Query: 376 aattccctcctcccttgtgaggccttctctgtacttcaactcaaacactgacatcgcagc 435 |||||| || ||||| || ||||||||| | ||||| ||||||||| ||||| ||||| Sbjct: 666 aattccttcatccctagttaggccttctttatactttgcctcaaacacagacatagcagc 607 Query: 436 aagggatccagaacccatcgtggcaaaaggaagagtatcggtggagccatgcggataaac 495 ||| || || |||||||| || || || |||||||| || || || || || || || | Sbjct: 606 aagagaacccgaacccattgtagcgaatggaagagtgtcagttgaaccgtgtgggtatat 547 Query: 496 agtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagcactgacatg 555 ||| || |||||||| ||||||| ||| ||||| || || |||||||||||| |||||| Sbjct: 546 agtatgcagatgtggaccagtgatatcaactccaccgagtacaagagcagcagagacatg 487 Query: 556 accttggtag 565 |||||||||| Sbjct: 486 accttggtag 477 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 311 tccacgttgctgccacttcccaagtcattgaagatacc 348 ||||||||||| ||||| |||| ||||||||| ||||| Sbjct: 731 tccacgttgctaccactacccaggtcattgaatatacc 694 Score = 40.1 bits (20), Expect = 9.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || || ||||| |||||||| ||||| Sbjct: 398 agctgtgagctgaccatatcagtgactgcttcagtatcagccgcagttcctgcacc 343
>gb|AC150800.3| Medicago truncatula chromosome 7 BAC clone mth2-77m9, complete sequence Length = 116865 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 291 ccttggttatcacacaaacatccacgttgctgccacttcccaagtcattgaagataccag 350 |||||||||||||||||||||| || || || ||||||||||||||||| || ||||||| Sbjct: 106030 ccttggttatcacacaaacatcaacattacttccacttcccaagtcattaaatataccag 106089 Query: 351 cac 353 ||| Sbjct: 106090 cac 106092 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 663 ctgtcacagcctctgtgtcagcagcagt 690 |||| ||||||||||| ||||||||||| Sbjct: 108033 ctgttacagcctctgtatcagcagcagt 108060 Score = 40.1 bits (20), Expect = 9.6 Identities = 59/72 (81%) Strand = Plus / Plus Query: 493 aacagtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagcactgac 552 ||||||||||| ||| |||||||||| || || || |||||||| | ||||| ||| Sbjct: 107640 aacagtgtgtaaatgcggtccagtgatgtcaaccccaccaagaactaaggcagctgagac 107699 Query: 553 atgaccttggta 564 |||||||||||| Sbjct: 107700 atgaccttggta 107711
>ref|NM_180777.1| Arabidopsis thaliana PBB2; endopeptidase/ peptidase/ threonine endopeptidase AT5G40580 (PBB2) transcript variant AT5G40580.1 mRNA, complete cds Length = 1176 Score = 67.9 bits (34), Expect = 4e-08 Identities = 121/150 (80%) Strand = Plus / Minus Query: 416 tcaaacactgacatcgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcg 475 |||||||||||||| ||||||||||| ||||||||||| || ||||| || ||||| || Sbjct: 682 tcaaacactgacatggcagcaagggaaccagaacccattgtagcaaatggtagagtgtca 623 Query: 476 gtggagccatgcggataaacagtgtgtagatgtggtccagtgacatctactccgccaaga 535 || || || || || || | ||||| ||||| || || || | ||| ||||| ||||| Sbjct: 622 gtagaaccgtgtgggtatatcgtgtgaagatgaggcccggtaatatcaactccaccaagc 563 Query: 536 acaagagcagcactgacatgaccttggtag 565 ||||||||||| |||||| ||||||||| Sbjct: 562 acaagagcagctgagacatggccttggtag 533 Score = 48.1 bits (24), Expect = 0.039 Identities = 48/56 (85%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || ||||||||||| ||||| ||||| Sbjct: 454 agctgtgagctgaccatatcagttactgcttcagtgtcagcagcggttcctgcacc 399
>ref|NM_123422.2| Arabidopsis thaliana PBB2; endopeptidase/ peptidase/ threonine endopeptidase AT5G40580 (PBB2) transcript variant AT5G40580.2 mRNA, complete cds Length = 1106 Score = 67.9 bits (34), Expect = 4e-08 Identities = 121/150 (80%) Strand = Plus / Minus Query: 416 tcaaacactgacatcgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcg 475 |||||||||||||| ||||||||||| ||||||||||| || ||||| || ||||| || Sbjct: 612 tcaaacactgacatggcagcaagggaaccagaacccattgtagcaaatggtagagtgtca 553 Query: 476 gtggagccatgcggataaacagtgtgtagatgtggtccagtgacatctactccgccaaga 535 || || || || || || | ||||| ||||| || || || | ||| ||||| ||||| Sbjct: 552 gtagaaccgtgtgggtatatcgtgtgaagatgaggcccggtaatatcaactccaccaagc 493 Query: 536 acaagagcagcactgacatgaccttggtag 565 ||||||||||| |||||| ||||||||| Sbjct: 492 acaagagcagctgagacatggccttggtag 463 Score = 48.1 bits (24), Expect = 0.039 Identities = 48/56 (85%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || ||||||||||| ||||| ||||| Sbjct: 384 agctgtgagctgaccatatcagttactgcttcagtgtcagcagcggttcctgcacc 329
>emb|Y13177.1|ATY13177 Arabidopsis thaliana mRNA for proteasome subunit prcfc Length = 866 Score = 67.9 bits (34), Expect = 4e-08 Identities = 121/150 (80%) Strand = Plus / Minus Query: 416 tcaaacactgacatcgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcg 475 |||||||||||||| ||||||||||| ||||||||||| || ||||| || ||||| || Sbjct: 365 tcaaacactgacatggcagcaagggaaccagaacccattgtagcaaatggtagagtgtca 306 Query: 476 gtggagccatgcggataaacagtgtgtagatgtggtccagtgacatctactccgccaaga 535 || || || || || || | ||||| ||||| || || || | ||| ||||| ||||| Sbjct: 305 gtagaaccgtgtgggtatatcgtgtgaagatgaggcccggtaatatcaactccaccaagc 246 Query: 536 acaagagcagcactgacatgaccttggtag 565 ||||||||||| |||||| ||||||||| Sbjct: 245 acaagagcagctgagacatggccttggtag 216 Score = 48.1 bits (24), Expect = 0.039 Identities = 48/56 (85%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || ||||||||||| ||||| ||||| Sbjct: 137 agctgtgagctgaccatatcagttactgcttcagtgtcagcagcggttcctgcacc 82
>gb|AY087750.1| Arabidopsis thaliana clone 38185 mRNA, complete sequence Length = 1176 Score = 67.9 bits (34), Expect = 4e-08 Identities = 121/150 (80%) Strand = Plus / Minus Query: 416 tcaaacactgacatcgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcg 475 |||||||||||||| ||||||||||| ||||||||||| || ||||| || ||||| || Sbjct: 682 tcaaacactgacatggcagcaagggaaccagaacccattgtagcaaatggtagagtgtca 623 Query: 476 gtggagccatgcggataaacagtgtgtagatgtggtccagtgacatctactccgccaaga 535 || || || || || || | ||||| ||||| || || || | ||| ||||| ||||| Sbjct: 622 gtagaaccgtgtgggtatatcgtgtgaagatgaggcccggtaatatcaactccaccaagc 563 Query: 536 acaagagcagcactgacatgaccttggtag 565 ||||||||||| |||||| ||||||||| Sbjct: 562 acaagagcagctgagacatggccttggtag 533 Score = 48.1 bits (24), Expect = 0.039 Identities = 48/56 (85%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || ||||||||||| ||||| ||||| Sbjct: 454 agctgtgagctgaccatatcagttactgcttcagtgtcagcagcggttcctgcacc 399
>gb|AF043531.1|AF043531 Arabidopsis thaliana 20S proteasome beta subunit PBB2 (PBB2) mRNA, complete cds Length = 1085 Score = 67.9 bits (34), Expect = 4e-08 Identities = 121/150 (80%) Strand = Plus / Minus Query: 416 tcaaacactgacatcgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcg 475 |||||||||||||| ||||||||||| ||||||||||| || ||||| || ||||| || Sbjct: 573 tcaaacactgacatggcagcaagggaaccagaacccattgtagcaaatggtagagtgtca 514 Query: 476 gtggagccatgcggataaacagtgtgtagatgtggtccagtgacatctactccgccaaga 535 || || || || || || | ||||| ||||| || || || | ||| ||||| ||||| Sbjct: 513 gtagaaccgtgtgggtatatcgtgtgaagatgaggcccggtaatatcaactccaccaagc 454 Query: 536 acaagagcagcactgacatgaccttggtag 565 ||||||||||| |||||| ||||||||| Sbjct: 453 acaagagcagctgagacatggccttggtag 424 Score = 48.1 bits (24), Expect = 0.039 Identities = 48/56 (85%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || ||||||||||| ||||| ||||| Sbjct: 345 agctgtgagctgaccatatcagttactgcttcagtgtcagcagcggttcctgcacc 290
>dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K1G2 Length = 70952 Score = 63.9 bits (32), Expect = 7e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 494 acagtgtgtagatgtggtccagtgacatctactccgccaagaacaagagcagcactgaca 553 ||||| || |||||||| ||||||| ||| ||||| || || |||||||||||| |||| Sbjct: 54334 acagtatgcagatgtggaccagtgatatcaactccaccgagtacaagagcagcagagaca 54275 Query: 554 tgaccttggtag 565 |||||||||||| Sbjct: 54274 tgaccttggtag 54263 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 311 tccacgttgctgccacttcccaagtcattgaagatacc 348 ||||||||||| ||||| |||| ||||||||| ||||| Sbjct: 54692 tccacgttgctaccactacccaggtcattgaatatacc 54655
>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13 Length = 85992 Score = 63.9 bits (32), Expect = 7e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 416 tcaaacactgacatcgcagcaagggatccagaacccatcgtggcaaaaggaagagt 471 |||||||||||||| ||||||||||| ||||||||||| || ||||| || ||||| Sbjct: 23947 tcaaacactgacatggcagcaagggaaccagaacccattgtagcaaatggtagagt 24002
>gb|AY114591.1| Arabidopsis thaliana 20S proteasome beta subunit PBB2 (At5g40580) mRNA, complete cds Length = 957 Score = 60.0 bits (30), Expect = 1e-05 Identities = 120/150 (80%) Strand = Plus / Minus Query: 416 tcaaacactgacatcgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcg 475 |||||||||||||| |||||||||| ||||||||||| || ||||| || ||||| || Sbjct: 533 tcaaacactgacatgacagcaagggaaccagaacccattgtagcaaatggtagagtgtca 474 Query: 476 gtggagccatgcggataaacagtgtgtagatgtggtccagtgacatctactccgccaaga 535 || || || || || || | ||||| ||||| || || || | ||| ||||| ||||| Sbjct: 473 gtagaaccgtgtgggtatatcgtgtgaagatgaggcccggtaatatcaactccaccaagc 414 Query: 536 acaagagcagcactgacatgaccttggtag 565 ||||||||||| |||||| ||||||||| Sbjct: 413 acaagagcagctgagacatggccttggtag 384 Score = 48.1 bits (24), Expect = 0.039 Identities = 48/56 (85%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || ||||||||||| ||||| ||||| Sbjct: 305 agctgtgagctgaccatatcagttactgcttcagtgtcagcagcggttcctgcacc 250
>gb|AY093011.1| Arabidopsis thaliana 20S proteasome beta subunit PBB2 (At5g40580) mRNA, complete cds Length = 1105 Score = 60.0 bits (30), Expect = 1e-05 Identities = 120/150 (80%) Strand = Plus / Minus Query: 416 tcaaacactgacatcgcagcaagggatccagaacccatcgtggcaaaaggaagagtatcg 475 |||||||||||||| |||||||||| ||||||||||| || ||||| || ||||| || Sbjct: 612 tcaaacactgacatgacagcaagggaaccagaacccattgtagcaaatggtagagtgtca 553 Query: 476 gtggagccatgcggataaacagtgtgtagatgtggtccagtgacatctactccgccaaga 535 || || || || || || | ||||| ||||| || || || | ||| ||||| ||||| Sbjct: 552 gtagaaccgtgtgggtatatcgtgtgaagatgaggcccggtaatatcaactccaccaagc 493 Query: 536 acaagagcagcactgacatgaccttggtag 565 ||||||||||| |||||| ||||||||| Sbjct: 492 acaagagcagctgagacatggccttggtag 463 Score = 48.1 bits (24), Expect = 0.039 Identities = 48/56 (85%) Strand = Plus / Minus Query: 644 agctgggagctgaccatatctgtcacagcctctgtgtcagcagcagttccagcacc 699 ||||| |||||||||||||| || || || || ||||||||||| ||||| ||||| Sbjct: 384 agctgtgagctgaccatatcagttactgcttcagtgtcagcagcggttcctgcacc 329
>ref|NM_131675.1| Danio rerio proteasome (prosome, macropain) subunit, beta type, 7 (psmb7), mRNA Length = 969 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 329 cccaagtcattgaagataccagc 351 ||||||||||||||||||||||| Sbjct: 638 cccaagtcattgaagataccagc 616
>emb|AL772368.5| Zebrafish DNA sequence from clone CH211-167P9 in linkage group 21 Contains a novel gene similar to human and rodent NR6A1 (nuclear receptor subfamily 6, group A, member 1), a novel gene similar to Carassius auratus FTZ-F1, the psmb7 gene for proteasome (prosome, macropain) subunit, beta type, 7, a novel gene similar to human NEK7 (NIMA (never in mitosis gene a)-related kinase 7) and two CpG islands, complete sequence Length = 162620 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 329 cccaagtcattgaagataccagc 351 ||||||||||||||||||||||| Sbjct: 125599 cccaagtcattgaagataccagc 125577
>ref|XM_701677.1| PREDICTED: Danio rerio similar to proteasome (prosome, macropain) subunit, beta type, 7, transcript variant 2 (LOC572683), mRNA Length = 888 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 329 cccaagtcattgaagataccagc 351 ||||||||||||||||||||||| Sbjct: 581 cccaagtcattgaagataccagc 559
>ref|XM_677810.1| PREDICTED: Danio rerio similar to proteasome (prosome, macropain) subunit, beta type, 7, transcript variant 1 (LOC572683), mRNA Length = 979 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 329 cccaagtcattgaagataccagc 351 ||||||||||||||||||||||| Sbjct: 653 cccaagtcattgaagataccagc 631
>gb|BC092728.1| Danio rerio proteasome (prosome, macropain) subunit, beta type, 7, mRNA (cDNA clone MGC:110090 IMAGE:7283805), complete cds Length = 969 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 329 cccaagtcattgaagataccagc 351 ||||||||||||||||||||||| Sbjct: 638 cccaagtcattgaagataccagc 616
>gb|AF155581.1|AF155581 Danio rerio proteasome subunit beta 7 (PSMB7) mRNA, partial cds Length = 962 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 329 cccaagtcattgaagataccagc 351 ||||||||||||||||||||||| Sbjct: 626 cccaagtcattgaagataccagc 604
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 520 atctactccgccaagaacaaga 541 |||||||||||||||||||||| Sbjct: 1713091 atctactccgccaagaacaaga 1713112
>ref|NM_001032780.1| Ciona intestinalis proteasome Z subunit (zeta), mRNA Length = 1231 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Minus Query: 520 atctactccgccaagaacaagagcagcactgacatgaccttg 561 ||||||||| || || || | ||||||||||||||||||||| Sbjct: 501 atctactcctcccagcaccaaagcagcactgacatgaccttg 460
>ref|XM_570084.1| Cryptococcus neoformans var. neoformans JEC21 phosphatidyl-N-methylethanolamine N-methyltransferase (CND06200) partial mRNA Length = 948 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 520 atctactccgccaagaacaaga 541 |||||||||||||||||||||| Sbjct: 649 atctactccgccaagaacaaga 670
>emb|Y13174.1|ATY13174 Arabidopsis thaliana mRNA for proteasome subunit prcfb Length = 600 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 311 tccacgttgctgccacttcccaagtcattgaagatacc 348 ||||||||||| ||||| |||| ||||||||| ||||| Sbjct: 176 tccacgttgctaccactacccaggtcattgaatatacc 139
>emb|AJ002142.1|CIRNAPZS Ciona intestinalis mRNA for proteasome Z subunit Length = 1231 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Minus Query: 520 atctactccgccaagaacaagagcagcactgacatgaccttg 561 ||||||||| || || || | ||||||||||||||||||||| Sbjct: 501 atctactcctcccagcaccaaagcagcactgacatgaccttg 460
>emb|BX890627.4| Zebrafish DNA sequence from clone DKEY-21E7 in linkage group 22, complete sequence Length = 57918 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 55 aagcactgagaaaaaagaagaaatgg 80 ||||||||| |||||||||||||||| Sbjct: 33366 aagcactgaaaaaaaagaagaaatgg 33341
>dbj|AK174283.1| Ciona intestinalis cDNA, clone:cicl021b24, full insert sequence Length = 1200 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Minus Query: 520 atctactccgccaagaacaagagcagcactgacatgaccttg 561 ||||||||| || || || | ||||||||||||||||||||| Sbjct: 478 atctactcctcccagcaccaaagcagcactgacatgaccttg 437
>dbj|AK173394.1| Ciona intestinalis cDNA, clone:cilv021p14, full insert sequence Length = 1197 Score = 44.1 bits (22), Expect = 0.61 Identities = 37/42 (88%) Strand = Plus / Minus Query: 520 atctactccgccaagaacaagagcagcactgacatgaccttg 561 ||||||||| || || || | ||||||||||||||||||||| Sbjct: 477 atctactcctcccagcaccaaagcagcactgacatgaccttg 436
>emb|BX248416.3| Zebrafish DNA sequence from clone DKEY-75L1 in linkage group 22, complete sequence Length = 155796 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 aagcactgagaaaaaagaagaaatgg 80 ||||||||| |||||||||||||||| Sbjct: 107650 aagcactgaaaaaaaagaagaaatgg 107675
>ref|XM_419843.1| PREDICTED: Gallus gallus similar to mRNA capping enzyme (LOC421819), mRNA Length = 3106 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 caaacactgacatcgcagcaa 437 ||||||||||||||||||||| Sbjct: 559 caaacactgacatcgcagcaa 539
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 gccccttgttgaagctgtatc 227 ||||||||||||||||||||| Sbjct: 2497372 gccccttgttgaagctgtatc 2497392
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 agaaatggcgcaaattctta 92 |||||||||||||||||||| Sbjct: 1001598 agaaatggcgcaaattctta 1001617
>gb|DQ443343.1| Bombyx mori proteasome subunit beta 7 mRNA, complete cds Length = 1044 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 cccaagtcattgaagataccagca 352 |||||||||||||| ||||||||| Sbjct: 759 cccaagtcattgaatataccagca 736
>gb|AY642984.1| Tripsacum dactyloides clone CentT9 centromeric repeat sequence Length = 157 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tgagaaaaaagaagaaatgg 80 |||||||||||||||||||| Sbjct: 148 tgagaaaaaagaagaaatgg 129
>gb|AC147502.2| Mus musculus BAC clone RP23-111N9 from chromosome 7, complete sequence Length = 202934 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 catcagctacctctggcttcagct 170 ||||||||||||||||| |||||| Sbjct: 123045 catcagctacctctggcatcagct 123068
>gb|AC133177.3| Mus musculus BAC clone RP24-116D7 from chromosome 18, complete sequence Length = 185838 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctagaacaagcactgagaaa 67 |||||||||||||||||||| Sbjct: 13938 ctagaacaagcactgagaaa 13919
>ref|XM_975638.1| PREDICTED: Mus musculus interferon dependent positive acting transcription factor 3 gamma (Isgf3g), mRNA Length = 1408 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 58 tcagcagcagttccagcacc 77
>emb|BX294177.35| Zebrafish DNA sequence from clone CH211-281O13 in linkage group 12, complete sequence Length = 136080 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 acaacaaaatacatcctttt 41 |||||||||||||||||||| Sbjct: 40738 acaacaaaatacatcctttt 40757
>emb|CT025679.5| Mouse DNA sequence from clone RP24-296K22 on chromosome 14, complete sequence Length = 160805 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 37424 tcagcagcagttccagcacc 37443
>gb|AY283085.1| Mus musculus putative Ariadne-like ubiquitin ligase PAUL mRNA, complete cds Length = 3282 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 3247 tcagcagcagttccagcacc 3266
>gb|AC140352.3| Mus musculus BAC clone RP23-223L7 from chromosome 18, complete sequence Length = 165504 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctagaacaagcactgagaaa 67 |||||||||||||||||||| Sbjct: 150305 ctagaacaagcactgagaaa 150286
>emb|BX936408.10| Zebrafish DNA sequence from clone CH211-195A15 in linkage group 17, complete sequence Length = 198387 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 cactgagaaaaaagaagaaatggc 81 |||||||||| ||||||||||||| Sbjct: 49849 cactgagaaataagaagaaatggc 49826
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 agaaatggcgcaaattctta 92 |||||||||||||||||||| Sbjct: 1134799 agaaatggcgcaaattctta 1134818
>ref|XM_962112.1| PREDICTED: Tribolium castaneum similar to neuron navigator 2 isoform 2 (LOC655559), mRNA Length = 5778 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 tcaaacactgacatcgcagc 435 |||||||||||||||||||| Sbjct: 3693 tcaaacactgacatcgcagc 3712
>gb|AC105130.8| Homo sapiens chromosome 8, clone RP11-357L10, complete sequence Length = 188410 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 679 gtcagcagcagttccagcac 698 |||||||||||||||||||| Sbjct: 50377 gtcagcagcagttccagcac 50396
>gb|AC010070.8| Drosophila melanogaster 3L BAC RP98-18E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171622 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ctggcttcagcttcagctgc 178 |||||||||||||||||||| Sbjct: 96939 ctggcttcagcttcagctgc 96958
>gb|AC010118.8| Drosophila melanogaster 3L BAC RP98-10D15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171868 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ggcttcagcttcagctgcgt 180 |||||||||||||||||||| Sbjct: 145850 ggcttcagcttcagctgcgt 145831
>gb|AC090333.5| Homo sapiens chromosome 18, clone RP11-843P6, complete sequence Length = 165344 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 672 cctctgtgtcagcagcagtt 691 |||||||||||||||||||| Sbjct: 24056 cctctgtgtcagcagcagtt 24037
>ref|NM_139415.1| Drosophila melanogaster CG13924-RA (CG13924), mRNA Length = 1485 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ggcttcagcttcagctgcgt 180 |||||||||||||||||||| Sbjct: 290 ggcttcagcttcagctgcgt 271
>dbj|AB053120.1| Mus musculus DNA, proteasome activator genes, complete cds Length = 34849 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 31664 tcagcagcagttccagcacc 31683
>gb|AC009854.9| Homo sapiens chromosome 18, clone RP11-333A13, complete sequence Length = 207293 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 672 cctctgtgtcagcagcagtt 691 |||||||||||||||||||| Sbjct: 94513 cctctgtgtcagcagcagtt 94532
>dbj|AK156320.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830016G16 product:ring finger protein 31, full insert sequence Length = 3466 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 3421 tcagcagcagttccagcacc 3440
>gb|AC092235.1|AC092235 Drosophila melanogaster, chromosome 2L, region 21E-21F, BAC clone BACR30G21, complete sequence Length = 168370 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctctggcttcagcttcagct 176 |||||||||||||||||||| Sbjct: 36068 ctctggcttcagcttcagct 36049
>gb|AC155845.3| Mus musculus 6 BAC RP24-399D24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145877 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 aacaagagcagcactgacat 554 |||||||||||||||||||| Sbjct: 104202 aacaagagcagcactgacat 104221
>ref|XM_391905.2| PREDICTED: Apis mellifera similar to CG3329-PA (LOC408353), mRNA Length = 1474 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 313 tcagcagcagttccagcacc 294
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 caacaaaatacatccttttt 42 |||||||||||||||||||| Sbjct: 9199156 caacaaaatacatccttttt 9199175
>ref|XM_344409.2| PREDICTED: Rattus norvegicus ring finger protein 31 (predicted) (Rnf31_predicted), mRNA Length = 3437 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 3401 tcagcagcagttccagcacc 3420
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 caacaaaatacatccttttt 42 |||||||||||||||||||| Sbjct: 10369 caacaaaatacatccttttt 10388
>dbj|AK214637.1| Mus musculus cDNA, clone:Y2G0132H05, strand:unspecified Length = 85 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 54 tcagcagcagttccagcacc 35
>dbj|AK131160.1| Mus musculus premature mRNA for mFLJ00217 protein Length = 4939 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 4897 tcagcagcagttccagcacc 4916
>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14 Length = 155544 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 caacaaaatacatccttttt 42 |||||||||||||||||||| Sbjct: 134650 caacaaaatacatccttttt 134669
>emb|Y08571.1|NVY08571 N.vacuolatum gvpA, gvpC, gvpN, gvpO, gvpF, gvpG and gvpH genes Length = 5110 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tgagaaaaaagaagaaatgg 80 |||||||||||||||||||| Sbjct: 439 tgagaaaaaagaagaaatgg 458
>gb|BC057595.1| Mus musculus ring finger protein 31, mRNA (cDNA clone MGC:67171 IMAGE:6811051), complete cds Length = 3443 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 3338 tcagcagcagttccagcacc 3357
>gb|AY104327.1| Zea mays PCO078604 mRNA sequence Length = 1960 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 tccattgcatcaccatcagc 153 |||||||||||||||||||| Sbjct: 1469 tccattgcatcaccatcagc 1450
>emb|BX936463.13| Zebrafish DNA sequence from clone DKEY-4G17 in linkage group 17, complete sequence Length = 232846 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 58 cactgagaaaaaagaagaaatggc 81 |||||||||| ||||||||||||| Sbjct: 152867 cactgagaaataagaagaaatggc 152890
>gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 of 83 of the complete sequence Length = 308447 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctctggcttcagcttcagct 176 |||||||||||||||||||| Sbjct: 73191 ctctggcttcagcttcagct 73172
>gb|AE003525.4| Drosophila melanogaster chromosome 3L, section 60 of 83 of the complete sequence Length = 196398 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ctggcttcagcttcagctgc 178 |||||||||||||||||||| Sbjct: 107603 ctggcttcagcttcagctgc 107622
>gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 of 83 of the complete sequence Length = 315108 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ggcttcagcttcagctgcgt 180 |||||||||||||||||||| Sbjct: 32540 ggcttcagcttcagctgcgt 32521
>gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome 14, complete sequence Length = 224638 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 57537 tcagcagcagttccagcacc 57518
>gb|AC004713.1|AC004713 Drosophila melanogaster, chromosome 3L, region 62B8-62B11, P1 clone DS04710, complete sequence Length = 72327 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ggcttcagcttcagctgcgt 180 |||||||||||||||||||| Sbjct: 4064 ggcttcagcttcagctgcgt 4045
>gb|AF064601.1|AF064601 Xenopus laevis homeobox protein (Vax1) mRNA, complete cds Length = 888 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 528 cgccaagaacaagagcagca 547 |||||||||||||||||||| Sbjct: 171 cgccaagaacaagagcagca 190
>ref|NM_194346.2| Mus musculus ring finger protein 31 (Rnf31), mRNA Length = 3443 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 680 tcagcagcagttccagcacc 699 |||||||||||||||||||| Sbjct: 3338 tcagcagcagttccagcacc 3357
>gb|AC004245.1|AC004245 Drosophila melanogaster (P1 DS03239 (D138)) DNA sequence, complete sequence Length = 79454 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctctggcttcagcttcagct 176 |||||||||||||||||||| Sbjct: 40545 ctctggcttcagcttcagct 40526
>gb|AC149060.4| Mus musculus BAC clone RP23-242D8 from 7, complete sequence Length = 205543 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 catcagctacctctggcttcagct 170 ||||||||||||||||| |||||| Sbjct: 183500 catcagctacctctggcatcagct 183523
>gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, complete sequence Length = 224088 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 ctgttctagaacaagcactgagaa 66 |||||||||||||| ||||||||| Sbjct: 67173 ctgttctagaacaatcactgagaa 67150 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,795,489 Number of Sequences: 3902068 Number of extensions: 6795489 Number of successful extensions: 145470 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145024 Number of HSP's gapped (non-prelim): 443 length of query: 699 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 676 effective length of database: 17,143,297,704 effective search space: 11588869247904 effective search space used: 11588869247904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
