>YNP6_YEAST (P53898) Hypothetical 33.7 kDa protein in YGP1-YCK2 intergenic|
           region
          Length = 299

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 298 HRLLHPCSGFHPLALTCSLCHYLA---LPNWHSRG 393
           + LLHP     PL L   LC++L+   LPNW   G
Sbjct: 136 NHLLHPDFASRPLLLGVKLCNWLSNGVLPNWLGYG 170

>LYSC_EQUAS (P11375) Lysozyme C (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase C)|
          Length = 129

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 330 VESRTWMQESMRSSSNGCRTLCS 262
           + S+ W +++ RSSSN C  +CS
Sbjct: 59  LNSKWWCKDNKRSSSNACNIMCS 81

>METK_SILPO (Q5LLL2) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 393

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 159 VRSNGNLPGQGEDK*TILTVSMQDKWPVGPRCKILACSH 43
           VR NG  P  G D  + L+V  +D  PVG    +L+  H
Sbjct: 159 VRKNGTEPALGPDAKSQLSVIYRDGMPVGVSSLVLSTQH 197

>LYSC1_HORSE (P11376) Lysozyme C, milk isozyme (EC 3.2.1.17)|
           (1,4-beta-N-acetylmuramidase C)
          Length = 129

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 330 VESRTWMQESMRSSSNGCRTLCS 262
           + ++ W +++ RSSSN C  +CS
Sbjct: 59  LNNKWWCKDNKRSSSNACNIMCS 81

>BSC2_YEAST (Q05611) Bypass of stop codon protein 2|
          Length = 235

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 394 FHVNASLAKQGSGKGSTSGPRGGIPNMDAGVDEEFFEWLQNAMQS 260
           FH N S      GK  TSGP  G    +  +DEE    L  + +S
Sbjct: 109 FHYNRSSLPVADGKEKTSGPISG--KEEIVIDEEIINMLNESSES 151

>DPOL_ASFL6 (P43139) DNA polymerase (EC 2.7.7.7)|
          Length = 1244

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 136 RQVTIASYPSSFSCYYY---HRRRHSLHCFRCPEKGGRLALQT 255
           R+V I SY S + C YY   H+  + L  +   ++ GR+A  T
Sbjct: 438 REVGILSYTSLYDCIYYAGGHKVCNMLIAYAIHDEYGRIACST 480

>DPOL_ASFB7 (P42489) DNA polymerase (EC 2.7.7.7)|
          Length = 1207

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 136 RQVTIASYPSSFSCYYY---HRRRHSLHCFRCPEKGGRLALQT 255
           R+V I SY S + C YY   H+  + L  +   ++ GR+A  T
Sbjct: 438 REVGILSYTSLYDCIYYAGGHKVCNMLIAYAIHDEYGRIACST 480

>LHX5_RAT (P61376) LIM/homeobox protein Lhx5 (Homeobox protein LIM-2)|
          Length = 402

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 7   DSMASYPFRQNGMRASQYFASGANWPFVLHG 99
           + + S P+   G   S Y+A G N+ F  HG
Sbjct: 269 EMLGSTPYTYYGDYQSDYYAPGGNYDFFAHG 299

>LHX5_MOUSE (P61375) LIM/homeobox protein Lhx5|
          Length = 402

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 7   DSMASYPFRQNGMRASQYFASGANWPFVLHG 99
           + + S P+   G   S Y+A G N+ F  HG
Sbjct: 269 EMLGSTPYTYYGDYQSDYYAPGGNYDFFAHG 299

>MGN_DROME (P49028) Protein mago nashi|
          Length = 147

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 251 KHARLH-SVLQPFEELLIDSCIHVRDSTPWP 340
           K A +H SV++  + ++IDS I   D  PWP
Sbjct: 49  KEAFVHQSVMEELKRIIIDSEIMQEDDLPWP 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,894,960
Number of Sequences: 219361
Number of extensions: 1066284
Number of successful extensions: 3129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3128
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)