ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9n06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470167.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 1e-06
3gb|AY224585.1| Oryza sativa (japonica cultivar-group) isolate 30... 62 1e-06
4gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 62 1e-06
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
6dbj|AK060945.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
7gb|AC122159.30| Mus musculus strain 129/Sv clone ct7-575j15 map ... 46 0.086
8gb|AC023691.3| Drosophila melanogaster X BAC RP98-12H1 (Roswell ... 46 0.086
9gb|AC023688.4| Drosophila melanogaster X BAC RP98-42F7 (Roswell ... 46 0.086
10ref|NM_206697.1| Drosophila melanogaster cacophony CG1522-RB, tr... 46 0.086
11ref|NM_206696.1| Drosophila melanogaster cacophony CG1522-RC, tr... 46 0.086
12ref|NM_206695.1| Drosophila melanogaster cacophony CG1522-RD, tr... 46 0.086
13ref|NM_206694.1| Drosophila melanogaster cacophony CG1522-RE, tr... 46 0.086
14ref|NM_206693.1| Drosophila melanogaster cacophony CG1522-RF, tr... 46 0.086
15ref|NM_078578.2| Drosophila melanogaster cacophony CG1522-RA, tr... 46 0.086
16ref|NM_001014735.1| Drosophila melanogaster cacophony CG1522-RG,... 46 0.086
17ref|NM_001014734.1| Drosophila melanogaster cacophony CG1522-RH,... 46 0.086
18ref|NM_001014733.1| Drosophila melanogaster cacophony CG1522-RI,... 46 0.086
19ref|NM_001014732.1| Drosophila melanogaster cacophony CG1522-RJ,... 46 0.086
20gb|AC090489.8| Genomic sequence for Mus musculus, clone RP23-104... 46 0.086
21gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 ... 46 0.086
22gb|U55776.1|DMU55776 Drosophila melanogaster calcium channel alp... 46 0.086
23gb|AC170752.2| Mus musculus BAC clone RP23-116B8 from chromosome... 46 0.086
24emb|CR933563.5| Wallaby DNA sequence from clone MEKBa-325O12, co... 44 0.34
25ref|XM_324101.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.3
26ref|XM_955185.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.3
27gb|AC166261.6| Mus musculus BAC RP23-343K20 (Roswell Park Cance... 42 1.3
28gb|AC108950.4| Mus musculus BAC clone RP23-458E21 from chromosom... 42 1.3
29gb|AC146567.10| Medicago truncatula clone mth2-99p24, complete s... 42 1.3
30emb|AL109918.25|HSDJ152L7 Human DNA sequence from clone RP1-152L... 42 1.3
31emb|BX908811.1| Neurospora crassa DNA linkage group VI Cosmid co... 42 1.3
32gb|AC130895.2| Homo sapiens 12 BAC RP11-115H15 (Roswell Park Can... 42 1.3
33gb|AC021133.5| Homo sapiens chromosome 6 clone RP11-392A23, comp... 42 1.3
34gb|AC156954.5| Mus musculus 6 BAC RP24-343M7 (Roswell Park Cance... 42 1.3
35gb|AC079245.35| Mus musculus strain C57BL/6J chromosome 9 clone ... 42 1.3
36gb|AC153903.5| Mus musculus 6 BAC RP23-20C5 (Roswell Park Cancer... 42 1.3
37dbj|AP004981.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.3
38gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 5.3
39gb|AC140189.3| Mus musculus BAC clone RP24-370G18 from chromosom... 40 5.3
40gb|AC138131.16| Medicago truncatula clone mth2-21h11, complete s... 40 5.3
41emb|AL137020.13| Human DNA sequence from clone RP11-146B14 on ch... 40 5.3
42emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome... 40 5.3
43emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 5.3
44gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosom... 40 5.3
45ref|XM_394491.2| PREDICTED: Apis mellifera similar to GA13060-PA... 40 5.3
46gb|AC013262.7| Homo sapiens BAC clone RP11-89C12 from 2, complet... 40 5.3
47gb|AC153859.6| Mus musculus 10 BAC RP23-135F12 (Roswell Park Can... 40 5.3
48gb|AC116555.23| Mus musculus strain C57BL/6J clone rp23-160b14 m... 40 5.3
49gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome... 40 5.3
50gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 m... 40 5.3 
>ref|XM_470167.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2541

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 248  ttcaaacatgccagactgcatagcgttctgcagccattcgaagaactcctc 298
            ||||||||||||||||||||  || ||||||| ||| ||||||||||||||
Sbjct: 2073 ttcaaacatgccagactgcagtgcattctgcaaccactcgaagaactcctc 2023



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 141  agttaccattgcttcttacccttcctctttttc 173
            ||||||||||||||||| |||||| ||||||||
Sbjct: 2180 agttaccattgcttcttgcccttcttctttttc 2148
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                   
Query: 248      ttcaaacatgccagactgcatagcgttctgcagccattcgaagaactcctc 298
                ||||||||||||||||||||  || ||||||| ||| ||||||||||||||
Sbjct: 34688441 ttcaaacatgccagactgcagtgcattctgcaaccactcgaagaactcctc 34688491



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 141      agttaccattgcttcttacccttcctctttttc 173
                ||||||||||||||||| |||||| ||||||||
Sbjct: 34688334 agttaccattgcttcttgcccttcttctttttc 34688366
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>gb|AY224585.1| Oryza sativa (japonica cultivar-group) isolate 30899 DNAJ-like
           protein mRNA, partial cds
          Length = 687

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                              
Query: 248 ttcaaacatgccagactgcatagcgttctgcagccattcgaagaactcctc 298
           ||||||||||||||||||||  || ||||||| ||| ||||||||||||||
Sbjct: 615 ttcaaacatgccagactgcagtgcattctgcaaccactcgaagaactcctc 565
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>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
              sequence
          Length = 164236

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                 
Query: 248    ttcaaacatgccagactgcatagcgttctgcagccattcgaagaactcctc 298
              ||||||||||||||||||||  || ||||||| ||| ||||||||||||||
Sbjct: 146158 ttcaaacatgccagactgcagtgcattctgcaaccactcgaagaactcctc 146208



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 141    agttaccattgcttcttacccttcctctttttc 173
              ||||||||||||||||| |||||| ||||||||
Sbjct: 146051 agttaccattgcttcttgcccttcttctttttc 146083
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                   
Query: 248      ttcaaacatgccagactgcatagcgttctgcagccattcgaagaactcctc 298
                ||||||||||||||||||||  || ||||||| ||| ||||||||||||||
Sbjct: 34778513 ttcaaacatgccagactgcagtgcattctgcaaccactcgaagaactcctc 34778563



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 141      agttaccattgcttcttacccttcctctttttc 173
                ||||||||||||||||| |||||| ||||||||
Sbjct: 34778406 agttaccattgcttcttgcccttcttctttttc 34778438
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>dbj|AK060945.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-E11, full
           insert sequence
          Length = 1190

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                              
Query: 248 ttcaaacatgccagactgcatagcgttctgcagccattcgaagaactcctc 298
           ||||||||||||||||||||  || ||||||| ||| ||||||||||||||
Sbjct: 771 ttcaaacatgccagactgcagtgcattctgcaaccactcgaagaactcctc 721



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 141 agttaccattgcttcttacccttcctctttttc 173
           ||||||||||||||||| |||||| ||||||||
Sbjct: 878 agttaccattgcttcttgcccttcttctttttc 846
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>gb|AC122159.30| Mus musculus strain 129/Sv clone ct7-575j15 map 10, complete sequence
          Length = 183491

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 123    cttctccttgtccaggcaagtta 145
              |||||||||||||||||||||||
Sbjct: 167113 cttctccttgtccaggcaagtta 167091
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>gb|AC023691.3| Drosophila melanogaster X BAC RP98-12H1 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179892

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 239    gccttgcccttcaaacatgccag 261
              |||||||||||||||||||||||
Sbjct: 113775 gccttgcccttcaaacatgccag 113797
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>gb|AC023688.4| Drosophila melanogaster X BAC RP98-42F7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 186714

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 239    gccttgcccttcaaacatgccag 261
              |||||||||||||||||||||||
Sbjct: 153152 gccttgcccttcaaacatgccag 153130
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>ref|NM_206697.1| Drosophila melanogaster cacophony CG1522-RB, transcript variant B
            (cac), mRNA
          Length = 8458

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 239  gccttgcccttcaaacatgccag 261
            |||||||||||||||||||||||
Sbjct: 4427 gccttgcccttcaaacatgccag 4405
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>ref|NM_206696.1| Drosophila melanogaster cacophony CG1522-RC, transcript variant C
            (cac), mRNA
          Length = 8458

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 239  gccttgcccttcaaacatgccag 261
            |||||||||||||||||||||||
Sbjct: 4427 gccttgcccttcaaacatgccag 4405
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>ref|NM_206695.1| Drosophila melanogaster cacophony CG1522-RD, transcript variant D
            (cac), mRNA
          Length = 8458

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 239  gccttgcccttcaaacatgccag 261
            |||||||||||||||||||||||
Sbjct: 4427 gccttgcccttcaaacatgccag 4405
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>ref|NM_206694.1| Drosophila melanogaster cacophony CG1522-RE, transcript variant E
            (cac), mRNA
          Length = 8467

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 239  gccttgcccttcaaacatgccag 261
            |||||||||||||||||||||||
Sbjct: 4436 gccttgcccttcaaacatgccag 4414
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>ref|NM_206693.1| Drosophila melanogaster cacophony CG1522-RF, transcript variant F
            (cac), mRNA
          Length = 8467

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 239  gccttgcccttcaaacatgccag 261
            |||||||||||||||||||||||
Sbjct: 4436 gccttgcccttcaaacatgccag 4414
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>ref|NM_078578.2| Drosophila melanogaster cacophony CG1522-RA, transcript variant A
            (cac), mRNA
          Length = 8458

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 239  gccttgcccttcaaacatgccag 261
            |||||||||||||||||||||||
Sbjct: 4427 gccttgcccttcaaacatgccag 4405
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>ref|NM_001014735.1| Drosophila melanogaster cacophony CG1522-RG, transcript variant G
            (cac), mRNA
          Length = 8461

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 239  gccttgcccttcaaacatgccag 261
            |||||||||||||||||||||||
Sbjct: 4430 gccttgcccttcaaacatgccag 4408
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>ref|NM_001014734.1| Drosophila melanogaster cacophony CG1522-RH, transcript variant H
            (cac), mRNA
          Length = 8461

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 239  gccttgcccttcaaacatgccag 261
            |||||||||||||||||||||||
Sbjct: 4430 gccttgcccttcaaacatgccag 4408
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>ref|NM_001014733.1| Drosophila melanogaster cacophony CG1522-RI, transcript variant I
            (cac), mRNA
          Length = 8464

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 239  gccttgcccttcaaacatgccag 261
            |||||||||||||||||||||||
Sbjct: 4433 gccttgcccttcaaacatgccag 4411
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>ref|NM_001014732.1| Drosophila melanogaster cacophony CG1522-RJ, transcript variant J
            (cac), mRNA
          Length = 8464

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 239  gccttgcccttcaaacatgccag 261
            |||||||||||||||||||||||
Sbjct: 4433 gccttgcccttcaaacatgccag 4411
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>gb|AC090489.8| Genomic sequence for Mus musculus, clone RP23-104O10, complete sequence
          Length = 207424

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 123    cttctccttgtccaggcaagtta 145
              |||||||||||||||||||||||
Sbjct: 158863 cttctccttgtccaggcaagtta 158885
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>gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 of 74 of the complete
              sequence
          Length = 308317

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 239    gccttgcccttcaaacatgccag 261
              |||||||||||||||||||||||
Sbjct: 241216 gccttgcccttcaaacatgccag 241238
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>gb|U55776.1|DMU55776 Drosophila melanogaster calcium channel alpha-1 subunit (Dmca1A)
            mRNA, complete cds
          Length = 6522

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 239  gccttgcccttcaaacatgccag 261
            |||||||||||||||||||||||
Sbjct: 4436 gccttgcccttcaaacatgccag 4414
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>gb|AC170752.2| Mus musculus BAC clone RP23-116B8 from chromosome 10, complete sequence
          Length = 194054

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 123   cttctccttgtccaggcaagtta 145
             |||||||||||||||||||||||
Sbjct: 65747 cttctccttgtccaggcaagtta 65769
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>emb|CR933563.5| Wallaby DNA sequence from clone MEKBa-325O12, complete sequence
          Length = 179531

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 179   actactaccaccgccgccgcca 200
             ||||||||||||||||||||||
Sbjct: 79950 actactaccaccgccgccgcca 79971
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>ref|XM_324101.1| Neurospora crassa OR74A hypothetical protein (NCU04745.1) partial
            mRNA
          Length = 3978

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 178  tactactaccaccgccgccgc 198
            |||||||||||||||||||||
Sbjct: 2442 tactactaccaccgccgccgc 2462
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>ref|XM_955185.1| Neurospora crassa OR74A hypothetical protein (NCU04745.1) partial
            mRNA
          Length = 3978

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 178  tactactaccaccgccgccgc 198
            |||||||||||||||||||||
Sbjct: 2442 tactactaccaccgccgccgc 2462
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>gb|AC166261.6| Mus musculus  BAC RP23-343K20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190585

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 82     ccatttgtcttgcatggatac 102
              |||||||||||||||||||||
Sbjct: 170905 ccatttgtcttgcatggatac 170925
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>gb|AC108950.4| Mus musculus BAC clone RP23-458E21 from chromosome 9, complete sequence
          Length = 181083

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 159    cccttcctctttttcctgtta 179
              |||||||||||||||||||||
Sbjct: 177289 cccttcctctttttcctgtta 177269
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>gb|AC146567.10| Medicago truncatula clone mth2-99p24, complete sequence
          Length = 141672

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 180   ctactaccaccgccgccgcca 200
             |||||||||||||||||||||
Sbjct: 16357 ctactaccaccgccgccgcca 16337
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>emb|AL109918.25|HSDJ152L7 Human DNA sequence from clone RP1-152L7 on chromosome 6p11.2-12.3
              Contains three glutathione S-transferase pseudogenes, the
              GSTA2 gene for glutathione S-transferase A2, the gene for a
              novel protein (PTD011), a HNRNP A/B related protein
              pseudogene, a SH3BGRL3-like pseudogene and CpG Islands,
              complete sequence
          Length = 175940

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 364    cttgctttgccaaactggcat 384
              |||||||||||||||||||||
Sbjct: 118466 cttgctttgccaaactggcat 118446
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>emb|BX908811.1| Neurospora crassa DNA linkage group VI Cosmid contig H4H7
          Length = 108058

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 178    tactactaccaccgccgccgc 198
              |||||||||||||||||||||
Sbjct: 102063 tactactaccaccgccgccgc 102083
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>gb|AC130895.2| Homo sapiens 12 BAC RP11-115H15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 123162

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   tcaaaatcgtttatttatctt 125
             |||||||||||||||||||||
Sbjct: 88473 tcaaaatcgtttatttatctt 88493
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>gb|AC021133.5| Homo sapiens chromosome 6 clone RP11-392A23, complete sequence
          Length = 204809

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 364  cttgctttgccaaactggcat 384
            |||||||||||||||||||||
Sbjct: 4737 cttgctttgccaaactggcat 4717
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>gb|AC156954.5| Mus musculus 6 BAC RP24-343M7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 179140

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 82     ccatttgtcttgcatggatac 102
              |||||||||||||||||||||
Sbjct: 174052 ccatttgtcttgcatggatac 174032
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>gb|AC079245.35| Mus musculus strain C57BL/6J chromosome 9 clone rp23-426k2, complete
             sequence
          Length = 213098

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   cccttcctctttttcctgtta 179
             |||||||||||||||||||||
Sbjct: 97206 cccttcctctttttcctgtta 97226
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>gb|AC153903.5| Mus musculus 6 BAC RP23-20C5 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 210370

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 82    ccatttgtcttgcatggatac 102
             |||||||||||||||||||||
Sbjct: 87950 ccatttgtcttgcatggatac 87930
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>dbj|AP004981.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT13N17, TM0436b,
             complete sequence
          Length = 43428

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 179   actactaccaccgccgccgcc 199
             |||||||||||||||||||||
Sbjct: 18390 actactaccaccgccgccgcc 18410
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    aactggccatttgtcttgca 95
             ||||||||||||||||||||
Sbjct: 73291 aactggccatttgtcttgca 73310
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>gb|AC140189.3| Mus musculus BAC clone RP24-370G18 from chromosome 1, complete sequence
          Length = 182590

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tcttgcatggatacagtcaa 108
             ||||||||||||||||||||
Sbjct: 51403 tcttgcatggatacagtcaa 51422
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>gb|AC138131.16| Medicago truncatula clone mth2-21h11, complete sequence
          Length = 127696

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    accaccgccgccgccattcc 204
              ||||||||||||||||||||
Sbjct: 106067 accaccgccgccgccattcc 106086
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>emb|AL137020.13| Human DNA sequence from clone RP11-146B14 on chromosome 9 Contains part
              of the JMJD2C gene for jumonji domain containing 2C,
              complete sequence
          Length = 182231

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     agccagtattttgcatctgg 71
              ||||||||||||||||||||
Sbjct: 118058 agccagtattttgcatctgg 118039
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>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13
          Length = 341957

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    aactggccatttgtcttgca 95
             ||||||||||||||||||||
Sbjct: 73310 aactggccatttgtcttgca 73329
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>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             1/14
          Length = 343050

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    aactggccatttgtcttgca 95
             ||||||||||||||||||||
Sbjct: 73337 aactggccatttgtcttgca 73356
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>gb|AC124591.4| Mus musculus BAC clone RP23-136G17 from chromosome 8, complete
            sequence
          Length = 201039

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  cctctttttcctgttactac 183
            ||||||||||||||||||||
Sbjct: 1142 cctctttttcctgttactac 1123
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>ref|XM_394491.2| PREDICTED: Apis mellifera similar to GA13060-PA (LOC411018), mRNA
          Length = 5919

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 176 gttactactaccaccgccgccgcc 199
           |||||||| |||||||||||||||
Sbjct: 975 gttactaccaccaccgccgccgcc 952
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>gb|AC013262.7| Homo sapiens BAC clone RP11-89C12 from 2, complete sequence
          Length = 146559

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    cccttcctctttttcctgtt 178
              ||||||||||||||||||||
Sbjct: 118088 cccttcctctttttcctgtt 118107
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>gb|AC153859.6| Mus musculus 10 BAC RP23-135F12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222182

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    aaacatgccagactgcatag 270
              ||||||||||||||||||||
Sbjct: 131410 aaacatgccagactgcatag 131429
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>gb|AC116555.23| Mus musculus strain C57BL/6J clone rp23-160b14 map 8, complete sequence
          Length = 209784

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    cctctttttcctgttactac 183
              ||||||||||||||||||||
Sbjct: 192090 cctctttttcctgttactac 192071
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>gb|AC162945.5| Mus musculus BAC clone RP23-60O19 from chromosome 8, complete sequence
          Length = 221852

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   cctctttttcctgttactac 183
             ||||||||||||||||||||
Sbjct: 99147 cctctttttcctgttactac 99128
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>gb|AC114897.43| Mus musculus strain C57BL/6J clone rp23-158e11 map 8, complete
            sequence
          Length = 202175

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  cctctttttcctgttactac 183
            ||||||||||||||||||||
Sbjct: 1150 cctctttttcctgttactac 1131


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,689,365
Number of Sequences: 3902068
Number of extensions: 3689365
Number of successful extensions: 84196
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83919
Number of HSP's gapped (non-prelim): 277
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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