ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9n05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF 228 2e-59
2SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-li... 175 1e-43
3SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-rel... 94 4e-19
4SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-rel... 72 2e-12
5SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-rel... 71 3e-12
6SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-rel... 67 7e-11
7YIY8_SCHPO (Q9UUI5) Hypothetical protein C22F8.08 in chromosome I 65 2e-10
8SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-rel... 64 3e-10
9YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II 61 4e-09
10SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100 60 5e-09
11SEC24_YEAST (P40482) Protein transport protein Sec24 (Abnormal n... 48 2e-05
12SFB2_YEAST (P53953) SED5-binding protein 2 (SEC24-related protei... 39 0.011
13METK_PICTO (Q6L123) S-adenosylmethionine synthetase (EC 2.5.1.6)... 32 1.8
14METK_THEAC (Q9HM12) S-adenosylmethionine synthetase (EC 2.5.1.6)... 32 1.8
15SODC_PHOLE (P00446) Superoxide dismutase [Cu-Zn] precursor (EC 1... 32 2.4
16YCF1_ADICA (Q85FG7) Hypothetical 199.0 kDa protein ycf1 31 4.1
17SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat... 30 5.3
18UVRC_PROMA (Q7VBY8) UvrABC system protein C (Protein uvrC) (Exci... 30 5.3
19ATG5_NEUCR (Q872C6) Autophagy protein 5 30 9.0

>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score =  228 bits (580), Expect = 2e-59
 Identities = 106/188 (56%), Positives = 144/188 (76%), Gaps = 1/188 (0%)
 Frame = -1

Query: 686  LYTLALVKSIGLRNDGRVDDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSRDDEDSLI 507
            LYTLAL K +GLR DGR+DDRS+W          LAIPLV+PRMIA+HDL + D+E++++
Sbjct: 909  LYTLALTKGVGLRMDGRIDDRSFWINHVSSLSTPLAIPLVYPRMIAVHDLDANDNEENVV 968

Query: 506  PNPLTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQIFGLSSLAGAPNLLALEQFD 327
            P P+ L SE++ D+G+Y LENGEDG IY+G +VN   L+++F + S A  P+   L+++D
Sbjct: 969  PCPIPLQSEHLSDEGVYFLENGEDGLIYIGESVNSDILQKLFNVRSAAELPSQYVLQKYD 1028

Query: 326  NALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGD-FFRSLLVEDKAPGGLSYVEFLVHV 150
            N LS+K N+VVNEIRRQR SYLR++LC+KGDP+G+  F+S +VED+  GG SYV+FLV V
Sbjct: 1029 NQLSKKFNDVVNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVDFLVSV 1088

Query: 149  HRQIQSKM 126
            HRQIQ K+
Sbjct: 1089 HRQIQHKL 1096



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>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640|
          Length = 1069

 Score =  175 bits (444), Expect = 1e-43
 Identities = 81/143 (56%), Positives = 108/143 (75%)
 Frame = -1

Query: 686  LYTLALVKSIGLRNDGRVDDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSRDDEDSLI 507
            LYTLAL KS+GLR DGR+DDRS+W          LAIPLV+PRMI++HDL  +D E S++
Sbjct: 893  LYTLALTKSVGLRTDGRIDDRSFWINYVSSLSTPLAIPLVYPRMISVHDLDVKDTEGSVL 952

Query: 506  PNPLTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQIFGLSSLAGAPNLLALEQFD 327
            P P+ L+SE+I ++G+Y LENGEDG ++VG +V+   L+++F +SS A  PN   L+Q+D
Sbjct: 953  PPPIPLSSEHISNEGVYFLENGEDGLLFVGESVDSDILQKLFAVSSAAEIPNQFVLQQYD 1012

Query: 326  NALSRKVNEVVNEIRRQRCSYLR 258
            N LS+K N+ VNEIRRQRCSYLR
Sbjct: 1013 NQLSKKFNDAVNEIRRQRCSYLR 1035



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>SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-related protein C)|
          Length = 1094

 Score = 94.0 bits (232), Expect = 4e-19
 Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 4/192 (2%)
 Frame = -1

Query: 686  LYTLALVKSIGLRNDGRV--DDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSRDDEDS 513
            +Y   ++KS  L+    V  DDR+Y         V       +PR++ L   T    E +
Sbjct: 906  VYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPL---TKSPVEST 962

Query: 512  LIPNPLTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQIFGLSSLAGAPN-LLALE 336
              P  +  + E + +  IYLLENG + F++VG +V    ++ +F +SS +   + L  L 
Sbjct: 963  TEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLP 1022

Query: 335  QFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKA-PGGLSYVEFL 159
              DN LS+KV  +++ +R QR  Y++L + ++ D     F+  LVEDK+  GG SYV+FL
Sbjct: 1023 VLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFL 1082

Query: 158  VHVHRQIQSKMT 123
             H+H++I+  ++
Sbjct: 1083 CHMHKEIRQLLS 1094



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>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)|
          Length = 1032

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 50/187 (26%), Positives = 99/187 (52%), Gaps = 4/187 (2%)
 Frame = -1

Query: 686  LYTLALVKSIGL--RNDGRVDDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSRDDEDS 513
            +Y   L+K+  L  R +   D+R+Y         V  +    +P+++ +H L   D + +
Sbjct: 844  VYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTL---DVKST 900

Query: 512  LIPNPLTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQIFGLSSLAGA-PNLLALE 336
            ++P  +  +   + ++GI+LL NG   F+++G +  P  ++ IF + S A    ++  L 
Sbjct: 901  MLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLP 960

Query: 335  QFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAP-GGLSYVEFL 159
            +  N  S+++  ++  I+++R   ++L + ++ +     FR  LVEDK   GG SYV+FL
Sbjct: 961  EVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGSSYVDFL 1020

Query: 158  VHVHRQI 138
              VH++I
Sbjct: 1021 CCVHKEI 1027



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>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)|
          Length = 1268

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 8/191 (4%)
 Frame = -1

Query: 686  LYTLALVKSIGLRN--DGRVDDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSRDD--- 522
            LY LAL+K    R     R+DDR Y         ++  + ++ P +  +  LT       
Sbjct: 1076 LYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHV 1135

Query: 521  EDSLIPNP--LTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQIFGLSSLAGAPNL 348
             D ++P P    L++E +  +G +L++ G   +I+VG   +   +E + G ++ A  P  
Sbjct: 1136 NDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQK 1195

Query: 347  LA-LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAPGGLSY 171
            +  L + D   S +    +  +R  R     L + +   P+   F   L+ED+     SY
Sbjct: 1196 MTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSY 1255

Query: 170  VEFLVHVHRQI 138
             EFL+HV +QI
Sbjct: 1256 YEFLLHVQQQI 1266



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>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)|
            (Fragment)
          Length = 1078

 Score = 66.6 bits (161), Expect = 7e-11
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 8/191 (4%)
 Frame = -1

Query: 686  LYTLALVK--SIGLRNDGRVDDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSR---DD 522
            L+ LAL+K  S     + R+D+R +         ++  +    P +  + +L+     + 
Sbjct: 886  LFVLALLKQKSFQTGTNARLDERIFAMCQVKNQPLVYLMLTTHPSLYRVDNLSDEGALNI 945

Query: 521  EDSLIPNP--LTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQIFGLSSLAGAPNL 348
             D  IP P  L L+ E +  DG +L++ G    ++VG       L Q+ G+ + A  P  
Sbjct: 946  SDRTIPQPPILQLSVEKLSRDGAFLMDAGSVLMLWVGKNCTQNFLSQVLGVQNYASIPQP 1005

Query: 347  LA-LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAPGGLSY 171
            +  L + D   S ++   ++ +R QR  +  L + R   P    F   ++ED+    LSY
Sbjct: 1006 MTDLPELDTPESARIIAFISWLREQRPFFPILYVIRDESPMKANFLQNMIEDRTESALSY 1065

Query: 170  VEFLVHVHRQI 138
             EFL+H+ +Q+
Sbjct: 1066 YEFLLHIQQQV 1076



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>YIY8_SCHPO (Q9UUI5) Hypothetical protein C22F8.08 in chromosome I|
          Length = 926

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
 Frame = -1

Query: 686  LYTLALVKSIGLRNDGRV--DDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSR----D 525
            L  LAL K  G R    +  D RS            L +  ++P + +LHD+        
Sbjct: 730  LLCLALTKHTGFRRSSHISSDLRSIALCYLSTLPTPLLMRYIYPTLYSLHDMPIEAGTVT 789

Query: 524  DEDSLIPNPLTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQIFGLSSLAG-APNL 348
            ++  ++P+ L L S  +Q  G+YL++     F+Y+G    P  L   FG++SLA      
Sbjct: 790  EQGVVLPSALNLTSALLQSFGLYLVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGR 849

Query: 347  LALEQFDNALSRKVNEVVNEIR---RQRCSYLRLRLCR-KGDPS-GDFFRSLLVEDKAPG 183
              +   DN L+ ++N ++ ++R   +       L L R  GDP    +F S  VED++  
Sbjct: 850  FTMPVIDNPLNVRINAILGKLRSLDKGSTIMPSLYLVRGDGDPQLRSWFFSHFVEDRSEN 909

Query: 182  GLSYVEFLVHVHRQIQ 135
              SY++FL  +  +++
Sbjct: 910  SPSYLQFLQTLKEKVR 925



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>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)|
          Length = 1090

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 8/191 (4%)
 Frame = -1

Query: 686  LYTLALVKSIGLRNDG--RVDDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSR---DD 522
            L+ LAL+K    +     R+D+R +         ++  +    P +  + +L+     + 
Sbjct: 898  LFVLALLKQKSFQTGTSIRLDERIFAMCQVKSQPLVHLMLTTHPSLYRVDNLSDEGALNI 957

Query: 521  EDSLIPNP--LTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQIFGLSSLAGAPNL 348
             D  IP P  L L+ E +  DG +L++ G    ++VG   +   L Q+ G+ + A  P  
Sbjct: 958  NDRTIPQPPILQLSVEKLSRDGAFLMDAGSLLMLWVGRNCSQNFLSQVLGVQNYASIPQT 1017

Query: 347  LA-LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAPGGLSY 171
            +  L + D   S ++   ++ +R QR  +  L + R+       F   LVED+    LSY
Sbjct: 1018 MTDLPELDTPESARIAAFISWLREQRPFFPVLYVIREESLMKAAFLQSLVEDRTESALSY 1077

Query: 170  VEFLVHVHRQI 138
             EFL+H+ +Q+
Sbjct: 1078 YEFLLHIQQQV 1088



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>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II|
          Length = 891

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
 Frame = -1

Query: 569  VFPRMIALHDLTSRD-----DEDSLIP--NPLTLNSEN--IQDDGIYLLENGEDGFIYVG 417
            ++P + ALH L   D     +    +P   PL + +    I+D G +L+  G+  +++  
Sbjct: 729  LYPNIYALHQLQPTDCLPDPENTGCLPINMPLCVRASRKFIEDGGAFLIVTGQKSYLWFH 788

Query: 416  NAVNPATLEQIFGLSSLAGAPNLLALE--QFDNALSRKVNEVVNEIRRQRCSY-LRLRLC 246
               +P  L+ + G+ SL    +L ALE    D  LS +V  +++ +R Q  S  L  ++ 
Sbjct: 789  QRTSPLLLQDLLGVESLEDIDSLKALELPTLDTVLSVQVRNLLSSLRMQFPSMALHPQIV 848

Query: 245  RKG--DPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSK 129
            R+G     G+ F S LVED    G  Y++FL  +H  + ++
Sbjct: 849  RQGLDGSEGEIF-STLVEDNTREGFGYLDFLTKIHESLHTQ 888



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>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 60.5 bits (145), Expect = 5e-09
 Identities = 48/194 (24%), Positives = 96/194 (49%), Gaps = 10/194 (5%)
 Frame = -1

Query: 686  LYTLALVKS---IGLRNDGRVDDRSYWXXXXXXXXVLLAIPLVFPRMIALHDL----TSR 528
            LY LA+ KS   +G   D  +D+R           V   + L++P +  + +     ++ 
Sbjct: 844  LYGLAITKSTPLLGGPADTSLDERCAAGFTMMALPVKKLLKLLYPNLFRVDEWLLKPSAA 903

Query: 527  DDEDSLIPNPLTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQIFGLSSLAGAPNL 348
             D+   +   L L +E++   G+Y+ ++G    ++ G  ++P   + + G+   A    +
Sbjct: 904  HDDFKDVLRRLPLAAESLDSRGLYIYDDGFRLVLWFGRMLSPDIAKNLLGVDFAADLSRV 963

Query: 347  LALEQFDNALSRKVNEVVNEIRRQRCSYLRLR-LCRKGDPSGDFFRSL--LVEDKAPGGL 177
               EQ +N +S+K+  +V ++R    SY  +  L R+G+   + F  L  L+ED+  G  
Sbjct: 964  TFQEQ-ENGMSKKLMRLVKKLRESDPSYHPMCFLVRQGEQPREGFLLLRNLIEDQMGGSS 1022

Query: 176  SYVEFLVHVHRQIQ 135
             YV++++ +HRQ+Q
Sbjct: 1023 GYVDWILQLHRQVQ 1036



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>SEC24_YEAST (P40482) Protein transport protein Sec24 (Abnormal nuclear morphology|
            1)
          Length = 926

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 31/168 (18%)
 Frame = -1

Query: 569  VFPRMIALHDLTSR-----DDEDS------LIPNPLTLNSENIQDDGIYLLENGEDGFIY 423
            ++P + +LHD+          ED       ++P P+   S   +  G+YL++NG + F++
Sbjct: 752  IYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLW 811

Query: 422  VGNAVNPATLEQIFGLSSL----AGAPNLLALEQFDNALSRKVNEVVNEIRRQR--CSYL 261
            +G    PA +  +FG   +     G   +  +E  ++  +++V  ++N++R      +Y 
Sbjct: 812  MGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVE--NSEFNQRVRNIINQLRNHDDVITYQ 869

Query: 260  RLRLCRKGDPSGD--------------FFRSLLVEDKAPGGLSYVEFL 159
             L + R    S                +  S LVEDK     SY EFL
Sbjct: 870  SLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYREFL 917



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>SFB2_YEAST (P53953) SED5-binding protein 2 (SEC24-related protein 2)|
          Length = 876

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 25/165 (15%)
 Frame = -1

Query: 578  IPLVFPRMIALHDLTSRD-----DEDSLIPNPLTLNSENIQDDGIYLLENGEDGFIYVGN 414
            I  ++P + +LHD+         +  +++P P+       +  G+YL++N  + F++VG 
Sbjct: 705  IKSIYPTVYSLHDMPDEVGLPDFEGKTVLPEPINATISLFERYGLYLIDNSAELFLWVGG 764

Query: 413  AVNPATLEQIFGLSSLA----GAPNLLALEQFDNALSRKVNEVVNEIRRQRCSYLRLRLC 246
               P  L  +F   +++    G   L  L   D+  + ++  ++  IR    +     L 
Sbjct: 765  DAVPELLIDVFNTDTISQIPVGKSELPLLN--DSPFNERLRRIIGRIRENNDTITFQSLY 822

Query: 245  RKGDPSGD----------------FFRSLLVEDKAPGGLSYVEFL 159
                PS +                +  S LVEDK     SY E+L
Sbjct: 823  IIRGPSINEPANLNSEKDMASLRLWVLSTLVEDKVLNCASYREYL 867



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>METK_PICTO (Q6L123) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase)
          Length = 402

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
 Frame = -1

Query: 491 LNSENIQDDGIYLL-------ENGEDGFIYVGNAVNP-ATLEQIFGLSSLAGAPNLLALE 336
           +N+ +I+DD +Y L       ENG+DG +  GN VN   T  +   + + AG   +  + 
Sbjct: 255 VNTGDIKDDKVYYLTVTGLSMENGDDGSVGRGNRVNGLITPYRPMSMEAAAGKNPVTHVG 314

Query: 335 QFDNALSRKV-NEVVNE 288
           +  N LS  + N++V E
Sbjct: 315 KLYNVLSNIIANDIVKE 331



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>METK_THEAC (Q9HM12) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase)
          Length = 400

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
 Frame = -1

Query: 491 LNSENIQDDGI---YL------LENGEDGFIYVGNAVNP-ATLEQIFGLSSLAGAPNLLA 342
           +N+ +I++DG    YL      +ENG+DG +  GN VN   T  +   + + AG   +  
Sbjct: 251 INTADIKEDGKAVGYLTVTGMSMENGDDGSVGRGNRVNGLITPYRAMSMEAAAGKNPVTH 310

Query: 341 LEQFDNALSRKV-NEVVNE 288
           + +  N LS K+ N++V E
Sbjct: 311 VGKLYNVLSNKIANDIVKE 329



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>SODC_PHOLE (P00446) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)|
          Length = 173

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 182 HQVLCPPPTANGRNLQTGRPFGTVSVSSKSISVALFHSRLHSLSWTMH 325
           HQ L    T    +LQTG+P GT+ +S     V +F   L  L+  MH
Sbjct: 18  HQALAQDLTVKMTDLQTGKPVGTIELSQNKYGV-VFTPELADLTPGMH 64



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>YCF1_ADICA (Q85FG7) Hypothetical 199.0 kDa protein ycf1|
          Length = 1691

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +3

Query: 75   GIDNLYQPKYHTNEASGHLALDLPVNMYEEL---HIGKATRCFVLHQQRTEE--ISRRVA 239
            G+ NLYQPK +  +   H  L     +  E+   H+   T CF     +T+E     +VA
Sbjct: 1170 GVSNLYQPKMYEKQTPVHYNLIATKFLSPEIRNNHVNDLTMCFDTETGKTDEEFFDEKVA 1229

Query: 240  LSAQS 254
             S ++
Sbjct: 1230 RSIEN 1234



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>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)|
            (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte
            nuclear envelope protein 1) (Myne-1) (Enaptin)
          Length = 8797

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
 Frame = +3

Query: 123  GHLALDLPVNMYEELHI--GKATRCFVLHQQRTEEISRR-VALSAQSQ-SQVRASLS 281
            GHLA    +   E+LH+  GKA  CF L ++ ++ + RR +ALS  ++  Q  ASLS
Sbjct: 1825 GHLAKLGSLGRAEDLHLLQGKAEDCFQLFEEASQVVERRQLALSHLAEFLQSHASLS 1881



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>UVRC_PROMA (Q7VBY8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 640

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -1

Query: 539 LTSRDDEDSLIPNPLTLNS--ENI-QDDGIYLLENGEDGFIYVGNAVN 405
           + S +D   LI +P  L +  +NI +  G YL+++ ED  IY+G ++N
Sbjct: 1   MRSLNDNLPLILDPTRLKTTLDNIPKAPGCYLMKDNEDNIIYIGKSIN 48



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>ATG5_NEUCR (Q872C6) Autophagy protein 5|
          Length = 397

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +2

Query: 185 QVLCPPPTANGRNLQTGRPFGTVSVSSKSISVALFHSRLHSLSWTMHYQIAPMPTDLVHQ 364
           Q L PP   N R  QT      +  + KS+  ALF S    +  ++    AP+P     +
Sbjct: 324 QTLVPPRGPNNRTPQT------LGQALKSLLPALFPSSRDPVLASVILHGAPVPFSAPLE 377

Query: 365 PRMRDQIFAPGW 400
             MRD  +  GW
Sbjct: 378 ELMRDASYPDGW 389


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,020,181
Number of Sequences: 219361
Number of extensions: 2539895
Number of successful extensions: 6973
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6967
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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