ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9n04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KIN2_YEAST (P13186) Serine/threonine-protein kinase KIN2 (EC 2.7... 33 0.68
2HUTU_BACAN (Q81Y46) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 32 2.0
3HIS5_CYAME (Q85FY4) Imidazole glycerol phosphate synthase subuni... 31 2.6
4ZN235_MOUSE (Q61116) Zinc finger protein 235 (Zinc finger protei... 30 5.7
5ANR12_HUMAN (Q6UB98) Ankyrin repeat domain-containing protein 12... 29 9.8
6XDH_HUMAN (P47989) Xanthine dehydrogenase/oxidase [Includes: Xan... 29 9.8

>KIN2_YEAST (P13186) Serine/threonine-protein kinase KIN2 (EC 2.7.11.1)|
          Length = 1147

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = -1

Query: 560  GMSMEVAPLTLNXAQMSITLSATXRSRIFHNLHPSTXCILTKGLKDEPPMKPE 402
            G S E++ ++L+  Q    +  T R++  +N++  T    T G+K+ PP+K E
Sbjct: 1056 GTSGELSSMSLDYVQQQDDILTTSRAQNINNVNGQTEQTNTSGIKERPPIKFE 1108



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>HUTU_BACAN (Q81Y46) Urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 552

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +3

Query: 108 RVCILITVNLDQSLATQGR*WDQKKEKKKTELLGDSCQLMVKDVSPTMTPHLFPPQNCT- 284
           R C + T +L+++LA     + +KKE     LLG++ +++ + V   +TP L   Q    
Sbjct: 206 RYCDMYTESLEEALAVANE-YKEKKEPISIGLLGNAAEILPELVKRNITPDLVTDQTSAH 264

Query: 285 -PLDVHASLSY 314
            PL+ +  + Y
Sbjct: 265 DPLNGYIPVGY 275



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>HIS5_CYAME (Q85FY4) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 206

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 94  VSEIVVIVAGHWGWSRFPCTQNCCRNIHWV 5
           V  + V V  H GW+R  C  + C+N  WV
Sbjct: 105 VKRLPVKVIPHMGWNRLECQNSECQNSEWV 134



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>ZN235_MOUSE (Q61116) Zinc finger protein 235 (Zinc finger protein 93) (Zfp-93)|
          Length = 645

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
 Frame = +3

Query: 531 SQWGHLHAHPPCH-------LGDCSRNYCCHYGFHS 617
           +QW HL AH   H        GDC + + C    H+
Sbjct: 351 TQWAHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHT 386



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>ANR12_HUMAN (Q6UB98) Ankyrin repeat domain-containing protein 12 (Ankyrin|
            repeat-containing cofactor 2) (GAC-1 protein)
          Length = 2062

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 189  KKTELLGDSCQLMVKDVSPTMTPHLFPPQNCT---PLDVHASLSYV--QDP 326
            ++TEL G+SC        P   P  FP Q+ +    +  H SLSYV  Q+P
Sbjct: 1469 RQTELPGNSCAQDPASFMPPQQPCSFPSQSLSDAESISKHMSLSYVANQEP 1519



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>XDH_HUMAN (P47989) Xanthine dehydrogenase/oxidase [Includes: Xanthine|
           dehydrogenase (EC 1.17.1.4) (XD); Xanthine oxidase (EC
           1.17.3.2) (XO) (Xanthine oxidoreductase)]
          Length = 1332

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +3

Query: 216 CQLMVKDVSPTMTPHLFPPQNCTPLDVHASLSYVQDPHHPSAL*TVLVTSNKTNLGINRQ 395
           C    KD S +++P LF P+  TPLD        Q+P  P  L  +  T  K       Q
Sbjct: 179 CMNQKKDHSVSLSPSLFKPEEFTPLDP------TQEPIFPPELLRLKDTPRK-------Q 225

Query: 396 LRF 404
           LRF
Sbjct: 226 LRF 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,695,825
Number of Sequences: 219361
Number of extensions: 1770500
Number of successful extensions: 4132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4132
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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