ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9m23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome... 172 6e-40
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 172 6e-40
3dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic D... 172 6e-40
4dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic D... 172 6e-40
5dbj|AK065778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 6e-40
6emb|AJ890024.1| Zea mays partial mRNA for putative translation i... 101 2e-18
7gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.36
8ref|NM_069932.2| Caenorhabditis elegans C42C1.5 (guanyltransfera... 42 1.4
9gb|AF043695.2| Caenorhabditis elegans cosmid C42C1, complete seq... 42 1.4
10ref|NM_016341.2| Homo sapiens phospholipase C, epsilon 1 (PLCE1)... 40 5.6
11ref|XM_711369.1| Candida albicans SC5314 p100-like putative TFII... 40 5.6
12emb|Z98752.16|HS138B7 Human DNA sequence from clone RP1-138B7 on... 40 5.6
13gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.6
14gb|AF170071.1|AF170071 Homo sapiens phospholipase C epsilon mRNA... 40 5.6
15gb|AF190642.2|AF190642 Homo sapiens phosphoinositide-specific ph... 40 5.6
16dbj|AB040949.2| Homo sapiens mRNA for KIAA1516 protein, partial cds 40 5.6
17gb|AF117948.1|AF117948 Homo sapiens pancreas-enriched phospholip... 40 5.6
18ref|NM_207852.1| Eremothecium gossypii AAL043Cp (AAL043C), mRNA 40 5.6

>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0028C22, complete sequence
          Length = 154228

 Score =  172 bits (87), Expect = 6e-40
 Identities = 153/175 (87%)
 Strand = Plus / Minus

                                                                          
Query: 227    atcagcactctatacggactgcgccgctttgtgtcgatatgaacttgggcttcctgatca 286
              ||||||| ||||| || || |||||||||||||| || |||||||||||||||||||| |
Sbjct: 114483 atcagcattctatccgaaccgcgccgctttgtgttgagatgaacttgggcttcctgataa 114424

                                                                          
Query: 287    cctgctccaagcactggatggtatccccaacctggtattcgtcgcagtcctcgatcacca 346
              |||||||||||||||||| | | |||||||||||| | ||||  |||||||  |||||||
Sbjct: 114423 cctgctccaagcactggacgatgtccccaacctggaaatcgttacagtcctgaatcacca 114364

                                                                     
Query: 347    atccacagtcgctacccttgtcgagcgtgtcagcatcctgcttctctcgcttcag 401
              ||||||||||| |||||||||||| ||| || || ||||||||||| ||||||||
Sbjct: 114363 atccacagtcgttacccttgtcgaccgtctctgcgtcctgcttctcccgcttcag 114309



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  172 bits (87), Expect = 6e-40
 Identities = 153/175 (87%)
 Strand = Plus / Minus

                                                                            
Query: 227      atcagcactctatacggactgcgccgctttgtgtcgatatgaacttgggcttcctgatca 286
                ||||||| ||||| || || |||||||||||||| || |||||||||||||||||||| |
Sbjct: 19787216 atcagcattctatccgaaccgcgccgctttgtgttgagatgaacttgggcttcctgataa 19787157

                                                                            
Query: 287      cctgctccaagcactggatggtatccccaacctggtattcgtcgcagtcctcgatcacca 346
                |||||||||||||||||| | | |||||||||||| | ||||  |||||||  |||||||
Sbjct: 19787156 cctgctccaagcactggacgatgtccccaacctggaaatcgttacagtcctgaatcacca 19787097

                                                                       
Query: 347      atccacagtcgctacccttgtcgagcgtgtcagcatcctgcttctctcgcttcag 401
                ||||||||||| |||||||||||| ||| || || ||||||||||| ||||||||
Sbjct: 19787096 atccacagtcgttacccttgtcgaccgtctctgcgtcctgcttctcccgcttcag 19787042



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>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0034B12
          Length = 124083

 Score =  172 bits (87), Expect = 6e-40
 Identities = 153/175 (87%)
 Strand = Plus / Minus

                                                                         
Query: 227   atcagcactctatacggactgcgccgctttgtgtcgatatgaacttgggcttcctgatca 286
             ||||||| ||||| || || |||||||||||||| || |||||||||||||||||||| |
Sbjct: 11656 atcagcattctatccgaaccgcgccgctttgtgttgagatgaacttgggcttcctgataa 11597

                                                                         
Query: 287   cctgctccaagcactggatggtatccccaacctggtattcgtcgcagtcctcgatcacca 346
             |||||||||||||||||| | | |||||||||||| | ||||  |||||||  |||||||
Sbjct: 11596 cctgctccaagcactggacgatgtccccaacctggaaatcgttacagtcctgaatcacca 11537

                                                                    
Query: 347   atccacagtcgctacccttgtcgagcgtgtcagcatcctgcttctctcgcttcag 401
             ||||||||||| |||||||||||| ||| || || ||||||||||| ||||||||
Sbjct: 11536 atccacagtcgttacccttgtcgaccgtctctgcgtcctgcttctcccgcttcag 11482



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>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0450E05
          Length = 176553

 Score =  172 bits (87), Expect = 6e-40
 Identities = 153/175 (87%)
 Strand = Plus / Minus

                                                                          
Query: 227    atcagcactctatacggactgcgccgctttgtgtcgatatgaacttgggcttcctgatca 286
              ||||||| ||||| || || |||||||||||||| || |||||||||||||||||||| |
Sbjct: 132902 atcagcattctatccgaaccgcgccgctttgtgttgagatgaacttgggcttcctgataa 132843

                                                                          
Query: 287    cctgctccaagcactggatggtatccccaacctggtattcgtcgcagtcctcgatcacca 346
              |||||||||||||||||| | | |||||||||||| | ||||  |||||||  |||||||
Sbjct: 132842 cctgctccaagcactggacgatgtccccaacctggaaatcgttacagtcctgaatcacca 132783

                                                                     
Query: 347    atccacagtcgctacccttgtcgagcgtgtcagcatcctgcttctctcgcttcag 401
              ||||||||||| |||||||||||| ||| || || ||||||||||| ||||||||
Sbjct: 132782 atccacagtcgttacccttgtcgaccgtctctgcgtcctgcttctcccgcttcag 132728



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>dbj|AK065778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036C01, full
            insert sequence
          Length = 2727

 Score =  172 bits (87), Expect = 6e-40
 Identities = 153/175 (87%)
 Strand = Plus / Minus

                                                                        
Query: 227  atcagcactctatacggactgcgccgctttgtgtcgatatgaacttgggcttcctgatca 286
            ||||||| ||||| || || |||||||||||||| || |||||||||||||||||||| |
Sbjct: 2372 atcagcattctatccgaaccgcgccgctttgtgttgagatgaacttgggcttcctgataa 2313

                                                                        
Query: 287  cctgctccaagcactggatggtatccccaacctggtattcgtcgcagtcctcgatcacca 346
            |||||||||||||||||| | | |||||||||||| | ||||  |||||||  |||||||
Sbjct: 2312 cctgctccaagcactggacgatgtccccaacctggaaatcgttacagtcctgaatcacca 2253

                                                                   
Query: 347  atccacagtcgctacccttgtcgagcgtgtcagcatcctgcttctctcgcttcag 401
            ||||||||||| |||||||||||| ||| || || ||||||||||| ||||||||
Sbjct: 2252 atccacagtcgttacccttgtcgaccgtctctgcgtcctgcttctcccgcttcag 2198



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>emb|AJ890024.1| Zea mays partial mRNA for putative translation initiation factor
           IF-2 (if-2 gene), cultivar A69Y, from endosperm tissue
          Length = 640

 Score =  101 bits (51), Expect = 2e-18
 Identities = 120/143 (83%)
 Strand = Plus / Minus

                                                                       
Query: 259 gtcgatatgaacttgggcttcctgatcacctgctccaagcactggatggtatccccaacc 318
           ||||| ||||||||||||||||| ||||||||||||| |||||| ||| ||||||| |||
Sbjct: 518 gtcgagatgaacttgggcttcctaatcacctgctccacgcactgtatgatatcccctacc 459

                                                                       
Query: 319 tggtattcgtcgcagtcctcgatcaccaatccacagtcgctacccttgtcgagcgtgtca 378
           ||| | || ||||| ||||  |||||||  ||||||||| ||||||| ||||  || || 
Sbjct: 458 tggaaatcatcgcaatcctgaatcaccagcccacagtcgttacccttttcgactgtttct 399

                                  
Query: 379 gcatcctgcttctctcgcttcag 401
           || |||| |||||| ||||||||
Sbjct: 398 gcgtccttcttctcccgcttcag 376



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 325     tcgtcgcagtcctcgatcacca 346
               ||||||||||||||||||||||
Sbjct: 1828892 tcgtcgcagtcctcgatcacca 1828871



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>ref|NM_069932.2| Caenorhabditis elegans C42C1.5 (guanyltransferase) mRNA, complete
           cds
          Length = 1440

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 166 ttcaaacaaatggttgaattc 186
           |||||||||||||||||||||
Sbjct: 370 ttcaaacaaatggttgaattc 390



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>gb|AF043695.2| Caenorhabditis elegans cosmid C42C1, complete sequence
          Length = 44686

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 166   ttcaaacaaatggttgaattc 186
             |||||||||||||||||||||
Sbjct: 18984 ttcaaacaaatggttgaattc 18964



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>ref|NM_016341.2| Homo sapiens phospholipase C, epsilon 1 (PLCE1), mRNA
          Length = 7609

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 288  ctgctccaagcactggatgg 307
            ||||||||||||||||||||
Sbjct: 3801 ctgctccaagcactggatgg 3782



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>ref|XM_711369.1| Candida albicans SC5314 p100-like putative TFIIE-interacting
            transcriptional coactivator (CaO19_7328), mRNA
          Length = 2706

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 151  caaaattttggtcagttcaaacaa 174
            |||||||||| |||||||||||||
Sbjct: 2032 caaaattttgctcagttcaaacaa 2055



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>emb|Z98752.16|HS138B7 Human DNA sequence from clone RP1-138B7 on chromosome 20q13.12 Contains
             the 3' end of the L3MBTL gene for l(3)mbt-like
             (Drosophila), the SGK2 gene for serum/glucocorticoid
             regulated kinase 2, the 5' end of the C20orf9 gene (NGD5,
             CGI-53), an HSPC194 pseudogene and a CpG island, complete
             sequence
          Length = 84323

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    gccaaagcatctcaatcttt 61
             ||||||||||||||||||||
Sbjct: 39858 gccaaagcatctcaatcttt 39839



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>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
              complete sequence
          Length = 691920

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     tcgataggtgctgggtgttg 97
              ||||||||||||||||||||
Sbjct: 267250 tcgataggtgctgggtgttg 267269



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>gb|AF170071.1|AF170071 Homo sapiens phospholipase C epsilon mRNA, partial cds
          Length = 5982

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 288  ctgctccaagcactggatgg 307
            ||||||||||||||||||||
Sbjct: 2642 ctgctccaagcactggatgg 2623



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>gb|AF190642.2|AF190642 Homo sapiens phosphoinositide-specific phospholipase C PLC-epsilon
            mRNA, complete cds
          Length = 7609

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 288  ctgctccaagcactggatgg 307
            ||||||||||||||||||||
Sbjct: 3801 ctgctccaagcactggatgg 3782



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>dbj|AB040949.2| Homo sapiens mRNA for KIAA1516 protein, partial cds
          Length = 7989

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 288  ctgctccaagcactggatgg 307
            ||||||||||||||||||||
Sbjct: 4200 ctgctccaagcactggatgg 4181



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>gb|AF117948.1|AF117948 Homo sapiens pancreas-enriched phospholipase C mRNA, complete cds
          Length = 4069

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 288 ctgctccaagcactggatgg 307
           ||||||||||||||||||||
Sbjct: 275 ctgctccaagcactggatgg 256



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>ref|NM_207852.1| Eremothecium gossypii AAL043Cp (AAL043C), mRNA
          Length = 1617

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   tcgataggtgctgggtgttg 97
            ||||||||||||||||||||
Sbjct: 1225 tcgataggtgctgggtgttg 1206


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,943,398
Number of Sequences: 3902068
Number of extensions: 2943398
Number of successful extensions: 50893
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50828
Number of HSP's gapped (non-prelim): 65
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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