Clone Name | rbags9m23 |
---|---|
Clone Library Name | barley_pub |
>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0028C22, complete sequence Length = 154228 Score = 172 bits (87), Expect = 6e-40 Identities = 153/175 (87%) Strand = Plus / Minus Query: 227 atcagcactctatacggactgcgccgctttgtgtcgatatgaacttgggcttcctgatca 286 ||||||| ||||| || || |||||||||||||| || |||||||||||||||||||| | Sbjct: 114483 atcagcattctatccgaaccgcgccgctttgtgttgagatgaacttgggcttcctgataa 114424 Query: 287 cctgctccaagcactggatggtatccccaacctggtattcgtcgcagtcctcgatcacca 346 |||||||||||||||||| | | |||||||||||| | |||| ||||||| ||||||| Sbjct: 114423 cctgctccaagcactggacgatgtccccaacctggaaatcgttacagtcctgaatcacca 114364 Query: 347 atccacagtcgctacccttgtcgagcgtgtcagcatcctgcttctctcgcttcag 401 ||||||||||| |||||||||||| ||| || || ||||||||||| |||||||| Sbjct: 114363 atccacagtcgttacccttgtcgaccgtctctgcgtcctgcttctcccgcttcag 114309
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 172 bits (87), Expect = 6e-40 Identities = 153/175 (87%) Strand = Plus / Minus Query: 227 atcagcactctatacggactgcgccgctttgtgtcgatatgaacttgggcttcctgatca 286 ||||||| ||||| || || |||||||||||||| || |||||||||||||||||||| | Sbjct: 19787216 atcagcattctatccgaaccgcgccgctttgtgttgagatgaacttgggcttcctgataa 19787157 Query: 287 cctgctccaagcactggatggtatccccaacctggtattcgtcgcagtcctcgatcacca 346 |||||||||||||||||| | | |||||||||||| | |||| ||||||| ||||||| Sbjct: 19787156 cctgctccaagcactggacgatgtccccaacctggaaatcgttacagtcctgaatcacca 19787097 Query: 347 atccacagtcgctacccttgtcgagcgtgtcagcatcctgcttctctcgcttcag 401 ||||||||||| |||||||||||| ||| || || ||||||||||| |||||||| Sbjct: 19787096 atccacagtcgttacccttgtcgaccgtctctgcgtcctgcttctcccgcttcag 19787042
>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0034B12 Length = 124083 Score = 172 bits (87), Expect = 6e-40 Identities = 153/175 (87%) Strand = Plus / Minus Query: 227 atcagcactctatacggactgcgccgctttgtgtcgatatgaacttgggcttcctgatca 286 ||||||| ||||| || || |||||||||||||| || |||||||||||||||||||| | Sbjct: 11656 atcagcattctatccgaaccgcgccgctttgtgttgagatgaacttgggcttcctgataa 11597 Query: 287 cctgctccaagcactggatggtatccccaacctggtattcgtcgcagtcctcgatcacca 346 |||||||||||||||||| | | |||||||||||| | |||| ||||||| ||||||| Sbjct: 11596 cctgctccaagcactggacgatgtccccaacctggaaatcgttacagtcctgaatcacca 11537 Query: 347 atccacagtcgctacccttgtcgagcgtgtcagcatcctgcttctctcgcttcag 401 ||||||||||| |||||||||||| ||| || || ||||||||||| |||||||| Sbjct: 11536 atccacagtcgttacccttgtcgaccgtctctgcgtcctgcttctcccgcttcag 11482
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 172 bits (87), Expect = 6e-40 Identities = 153/175 (87%) Strand = Plus / Minus Query: 227 atcagcactctatacggactgcgccgctttgtgtcgatatgaacttgggcttcctgatca 286 ||||||| ||||| || || |||||||||||||| || |||||||||||||||||||| | Sbjct: 132902 atcagcattctatccgaaccgcgccgctttgtgttgagatgaacttgggcttcctgataa 132843 Query: 287 cctgctccaagcactggatggtatccccaacctggtattcgtcgcagtcctcgatcacca 346 |||||||||||||||||| | | |||||||||||| | |||| ||||||| ||||||| Sbjct: 132842 cctgctccaagcactggacgatgtccccaacctggaaatcgttacagtcctgaatcacca 132783 Query: 347 atccacagtcgctacccttgtcgagcgtgtcagcatcctgcttctctcgcttcag 401 ||||||||||| |||||||||||| ||| || || ||||||||||| |||||||| Sbjct: 132782 atccacagtcgttacccttgtcgaccgtctctgcgtcctgcttctcccgcttcag 132728
>dbj|AK065778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036C01, full insert sequence Length = 2727 Score = 172 bits (87), Expect = 6e-40 Identities = 153/175 (87%) Strand = Plus / Minus Query: 227 atcagcactctatacggactgcgccgctttgtgtcgatatgaacttgggcttcctgatca 286 ||||||| ||||| || || |||||||||||||| || |||||||||||||||||||| | Sbjct: 2372 atcagcattctatccgaaccgcgccgctttgtgttgagatgaacttgggcttcctgataa 2313 Query: 287 cctgctccaagcactggatggtatccccaacctggtattcgtcgcagtcctcgatcacca 346 |||||||||||||||||| | | |||||||||||| | |||| ||||||| ||||||| Sbjct: 2312 cctgctccaagcactggacgatgtccccaacctggaaatcgttacagtcctgaatcacca 2253 Query: 347 atccacagtcgctacccttgtcgagcgtgtcagcatcctgcttctctcgcttcag 401 ||||||||||| |||||||||||| ||| || || ||||||||||| |||||||| Sbjct: 2252 atccacagtcgttacccttgtcgaccgtctctgcgtcctgcttctcccgcttcag 2198
>emb|AJ890024.1| Zea mays partial mRNA for putative translation initiation factor IF-2 (if-2 gene), cultivar A69Y, from endosperm tissue Length = 640 Score = 101 bits (51), Expect = 2e-18 Identities = 120/143 (83%) Strand = Plus / Minus Query: 259 gtcgatatgaacttgggcttcctgatcacctgctccaagcactggatggtatccccaacc 318 ||||| ||||||||||||||||| ||||||||||||| |||||| ||| ||||||| ||| Sbjct: 518 gtcgagatgaacttgggcttcctaatcacctgctccacgcactgtatgatatcccctacc 459 Query: 319 tggtattcgtcgcagtcctcgatcaccaatccacagtcgctacccttgtcgagcgtgtca 378 ||| | || ||||| |||| ||||||| ||||||||| ||||||| |||| || || Sbjct: 458 tggaaatcatcgcaatcctgaatcaccagcccacagtcgttacccttttcgactgtttct 399 Query: 379 gcatcctgcttctctcgcttcag 401 || |||| |||||| |||||||| Sbjct: 398 gcgtccttcttctcccgcttcag 376
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 325 tcgtcgcagtcctcgatcacca 346 |||||||||||||||||||||| Sbjct: 1828892 tcgtcgcagtcctcgatcacca 1828871
>ref|NM_069932.2| Caenorhabditis elegans C42C1.5 (guanyltransferase) mRNA, complete cds Length = 1440 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 ttcaaacaaatggttgaattc 186 ||||||||||||||||||||| Sbjct: 370 ttcaaacaaatggttgaattc 390
>gb|AF043695.2| Caenorhabditis elegans cosmid C42C1, complete sequence Length = 44686 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ttcaaacaaatggttgaattc 186 ||||||||||||||||||||| Sbjct: 18984 ttcaaacaaatggttgaattc 18964
>ref|NM_016341.2| Homo sapiens phospholipase C, epsilon 1 (PLCE1), mRNA Length = 7609 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctgctccaagcactggatgg 307 |||||||||||||||||||| Sbjct: 3801 ctgctccaagcactggatgg 3782
>ref|XM_711369.1| Candida albicans SC5314 p100-like putative TFIIE-interacting transcriptional coactivator (CaO19_7328), mRNA Length = 2706 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 caaaattttggtcagttcaaacaa 174 |||||||||| ||||||||||||| Sbjct: 2032 caaaattttgctcagttcaaacaa 2055
>emb|Z98752.16|HS138B7 Human DNA sequence from clone RP1-138B7 on chromosome 20q13.12 Contains the 3' end of the L3MBTL gene for l(3)mbt-like (Drosophila), the SGK2 gene for serum/glucocorticoid regulated kinase 2, the 5' end of the C20orf9 gene (NGD5, CGI-53), an HSPC194 pseudogene and a CpG island, complete sequence Length = 84323 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gccaaagcatctcaatcttt 61 |||||||||||||||||||| Sbjct: 39858 gccaaagcatctcaatcttt 39839
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 tcgataggtgctgggtgttg 97 |||||||||||||||||||| Sbjct: 267250 tcgataggtgctgggtgttg 267269
>gb|AF170071.1|AF170071 Homo sapiens phospholipase C epsilon mRNA, partial cds Length = 5982 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctgctccaagcactggatgg 307 |||||||||||||||||||| Sbjct: 2642 ctgctccaagcactggatgg 2623
>gb|AF190642.2|AF190642 Homo sapiens phosphoinositide-specific phospholipase C PLC-epsilon mRNA, complete cds Length = 7609 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctgctccaagcactggatgg 307 |||||||||||||||||||| Sbjct: 3801 ctgctccaagcactggatgg 3782
>dbj|AB040949.2| Homo sapiens mRNA for KIAA1516 protein, partial cds Length = 7989 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctgctccaagcactggatgg 307 |||||||||||||||||||| Sbjct: 4200 ctgctccaagcactggatgg 4181
>gb|AF117948.1|AF117948 Homo sapiens pancreas-enriched phospholipase C mRNA, complete cds Length = 4069 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctgctccaagcactggatgg 307 |||||||||||||||||||| Sbjct: 275 ctgctccaagcactggatgg 256
>ref|NM_207852.1| Eremothecium gossypii AAL043Cp (AAL043C), mRNA Length = 1617 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 tcgataggtgctgggtgttg 97 |||||||||||||||||||| Sbjct: 1225 tcgataggtgctgggtgttg 1206 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,943,398 Number of Sequences: 3902068 Number of extensions: 2943398 Number of successful extensions: 50893 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50828 Number of HSP's gapped (non-prelim): 65 length of query: 417 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 395 effective length of database: 17,147,199,772 effective search space: 6773143909940 effective search space used: 6773143909940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)