Clone Information

BLAST Search Result

Clone Name	rbags9m19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK101024.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	466	e-128
2	dbj\|AK058254.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	466	e-128
3	dbj\|AK070828.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	458	e-125
4	gb\|AY105653.1\| Zea mays PCO079171 mRNA sequence	404	e-109
5	ref\|NM_197228.1\| Oryza sativa (japonica cultivar-group) putative...	252	1e-63
6	gb\|AC084023.8\| Oryza sativa (japonica cultivar-group) chromosome...	115	2e-22
7	gb\|AC078840.6\| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno...	115	2e-22
8	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	115	2e-22
9	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	115	2e-22
10	gb\|U01162.1\|U01162 Amaranthus hypochondriacus C4 photosynthetic ...	56	1e-04
11	emb\|Z23002.1\|MIST59KD S.tuberosum mitochondrial gene for the 59k...	50	0.009
12	gb\|AY107471.1\| Zea mays PCO115183 mRNA sequence	50	0.009
13	emb\|AJ404642.1\|CAR404642 Cicer arietinum partial ORF for NAD-dep...	46	0.14
14	gb\|BC029294.1\| Homo sapiens ELL associated factor 1, mRNA (cDNA ...	42	2.2
15	emb\|AL009031.1\|HS467D16 Human DNA sequence from clone RP3-467D16...	42	2.2
16	ref\|XM_965514.1\| PREDICTED: Tribolium castaneum similar to CG131...	42	2.2
17	emb\|Z23023.1\|STMALDEHB S.tuberosum mRNA for precursor of the mit...	42	2.2
18	gb\|AC008916.7\| Homo sapiens chromosome 5 clone CTD-2271P9, compl...	42	2.2
19	gb\|AC148817.3\| Medicago truncatula chromosome 7 BAC clone mth2-2...	42	2.2
20	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
21	gb\|AC090883.1\|AC090883 Homo sapiens chromosome 3 clone RP11-117G...	42	2.2
22	gb\|AC027125.5\| Homo sapiens chromosome 3 clone RP11-584M7 map 3p...	42	2.2
23	gb\|AC008959.4\|AC008959 Homo sapiens chromosome 5 clone CTD-2354D...	42	2.2
24	dbj\|AP000364.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
25	gb\|BC084421.1\| Xenopus laevis hypothetical LOC495193, mRNA (cDNA...	42	2.2
26	gb\|AC002326.1\|AC002326 Genomic sequence from Human 6, complete s...	42	2.2
27	tpd\|BR000069.1\| TPA: TPA_exp: Ciona intestinalis Ci-ZF(C2H2)-66 ...	42	2.2
28	ref\|NM_127548.2\| Arabidopsis thaliana malic enzyme/ oxidoreducta...	40	8.9
29	gb\|AC115065.11\| Mus musculus chromosome 3, clone RP24-401H12, co...	40	8.9
30	ref\|XM_454101.1\| Kluyveromyces lactis NRRL Y-1140, KLLA0E03377g ...	40	8.9
31	gb\|AF127019.7\| Homo sapiens chromosome 8 clone GS1-188e4 map p23...	40	8.9
32	gb\|AC131110.3\| Mus musculus BAC clone RP23-387J23 from chromosom...	40	8.9
33	emb\|CR382125.1\| Kluyveromyces lactis strain NRRL Y-1140 chromoso...	40	8.9
34	gb\|AC153634.3\| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cance...	40	8.9
35	gb\|AC005169.3\| Arabidopsis thaliana chromosome 2 clone F6F22 map...	40	8.9
36	gb\|AF353511.1\|AF353511 Porcine epidemic diarrhea virus strain CV...	40	8.9
37	gb\|AY062734.1\| Arabidopsis thaliana malate oxidoreductase (malic...	40	8.9
38	gb\|BC113247.1\| Bos taurus cDNA clone IMAGE:8083724	40	8.9
39	gb\|BT003371.1\| Arabidopsis thaliana malate oxidoreductase (malic...	40	8.9
40	gb\|AC006210.4\| Homo sapiens X BAC GS1-309P15 (Genome Systems Hum...	40	8.9
41	gb\|AC149333.2\| Phakopsora pachyrhizi clone JGIAFNA-25D11, comple...	40	8.9
42	emb\|CT573324.3\| CH251-10E6, complete sequence	40	8.9

>dbj|AK101024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150D19, full
            insert sequence
          Length = 2454

 Score =  466 bits (235), Expect = e-128
 Identities = 397/451 (88%)
 Strand = Plus / Minus

                                                                        
Query: 199  ttcacaagtgggctgtaaacagggtaccacatcttccgagccacgtaatccaccgtatcc 258
            ||||| || |||||||||| ||||||||||||||||||||||||  | || || || |||
Sbjct: 2120 ttcacgagggggctgtaaatagggtaccacatcttccgagccacaaagtcgactgtgtcc 2061

                                                                        
Query: 259  gactctgacatgctcctgaggtcccgaggatccatgtcagagcatccctcggccaaatct 318
            | ||| | ||||||| ||||||||| ||  || |  ||| | |  |||||||||| ||||
Sbjct: 2060 gcctcagtcatgctcttgaggtccctagcgtctacatcacaacgcccctcggccagatct 2001

                                                                        
Query: 319  tcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgatactt 378
            ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2000 tcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcctgatactt 1941

                                                                        
Query: 379  gaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagcaagg 438
            || ||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||||||
Sbjct: 1940 gagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgcaagg 1881

                                                                        
Query: 439  cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 498
            ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 1880 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 1821

                                                                        
Query: 499  cctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 558
            |||||||| || ||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 1820 cctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 1761

                                                                        
Query: 559  ccattgcttaaagtaacattactgaaagggcttccactagcaaatactgcattttcacca 618
            ||||||| |||||| ||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 1760 ccattgcctaaagtgacattactgaaagggcttccactggcaaatactgcattgtctcca 1701

                                           
Query: 619  acatgcttgaatacatcttcaggcgtacatt 649
            ||||  ||||||||||||||||| |||||||
Sbjct: 1700 acatatttgaatacatcttcaggagtacatt 1670

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>dbj|AK058254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C11, full
           insert sequence
          Length = 769

 Score =  466 bits (235), Expect = e-128
 Identities = 397/451 (88%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttcacaagtgggctgtaaacagggtaccacatcttccgagccacgtaatccaccgtatcc 258
           ||||| || |||||||||| ||||||||||||||||||||||||  | || || || |||
Sbjct: 485 ttcacgagggggctgtaaatagggtaccacatcttccgagccacaaagtcgactgtgtcc 426

                                                                       
Query: 259 gactctgacatgctcctgaggtcccgaggatccatgtcagagcatccctcggccaaatct 318
           | ||| | ||||||| ||||||||| ||  || |  ||| | |  |||||||||| ||||
Sbjct: 425 gcctcagtcatgctcttgaggtccctagcgtctacatcacaacgcccctcggccagatct 366

                                                                       
Query: 319 tcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgatactt 378
           ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 365 tcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcctgatactt 306

                                                                       
Query: 379 gaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagcaagg 438
           || ||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||||||
Sbjct: 305 gagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgcaagg 246

                                                                       
Query: 439 cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 498
           ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 245 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 186

                                                                       
Query: 499 cctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 558
           |||||||| || ||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 185 cctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 126

                                                                       
Query: 559 ccattgcttaaagtaacattactgaaagggcttccactagcaaatactgcattttcacca 618
           ||||||| |||||| ||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 125 ccattgcctaaagtgacattactgaaagggcttccactggcaaatactgcattgtctcca 66

                                          
Query: 619 acatgcttgaatacatcttcaggcgtacatt 649
           ||||  ||||||||||||||||| |||||||
Sbjct: 65  acatatttgaatacatcttcaggagtacatt 35

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>dbj|AK070828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065M02, full
            insert sequence
          Length = 2357

 Score =  458 bits (231), Expect = e-125
 Identities = 396/451 (87%)
 Strand = Plus / Minus

                                                                        
Query: 199  ttcacaagtgggctgtaaacagggtaccacatcttccgagccacgtaatccaccgtatcc 258
            ||||| || |||||||||| ||||||||||||||||||||||||  | || || || |||
Sbjct: 2039 ttcacgagggggctgtaaatagggtaccacatcttccgagccacaaagtcgactgtgtcc 1980

                                                                        
Query: 259  gactctgacatgctcctgaggtcccgaggatccatgtcagagcatccctcggccaaatct 318
            | ||| | ||||||| ||||||||| ||  || |  ||| | |  |||||||||| ||||
Sbjct: 1979 gcctcagtcatgctcttgaggtccctagcgtctacatcacaacgcccctcggccagatct 1920

                                                                        
Query: 319  tcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgatactt 378
            ||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 1919 tcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcccgatactt 1860

                                                                        
Query: 379  gaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagcaagg 438
            || ||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||||||
Sbjct: 1859 gagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgcaagg 1800

                                                                        
Query: 439  cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 498
            ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 1799 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 1740

                                                                        
Query: 499  cctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 558
            |||||||| || ||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 1739 cctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 1680

                                                                        
Query: 559  ccattgcttaaagtaacattactgaaagggcttccactagcaaatactgcattttcacca 618
            ||||||| |||||| ||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 1679 ccattgcctaaagtgacattactgaaagggcttccactggcaaatactgcattgtctcca 1620

                                           
Query: 619  acatgcttgaatacatcttcaggcgtacatt 649
            ||||  ||||||||||||||||| |||||||
Sbjct: 1619 acatatttgaatacatcttcaggagtacatt 1589

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>gb|AY105653.1| Zea mays PCO079171 mRNA sequence
          Length = 862

 Score =  404 bits (204), Expect = e-109
 Identities = 378/436 (86%)
 Strand = Plus / Minus

                                                                       
Query: 200 tcacaagtgggctgtaaacagggtaccacatcttccgagccacgtaatccaccgtatccg 259
           ||||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |  ||||
Sbjct: 484 tcacaagagggctgtaaatagggtaccacatcttccgagcgacgtagtccactgcttccg 425

                                                                       
Query: 260 actctgacatgctcctgaggtcccgaggatccatgtcagagcatccctcggccaaatctt 319
           |||||||||| ||||  || |||| |||| |||  ||| |||| ||||| ||||  ||||
Sbjct: 424 actctgacatactcccaagctccctaggacccacatcacagcacccctcagccaggtctt 365

                                                                       
Query: 320 catcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgatacttg 379
           || ||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||| |
Sbjct: 364 cagcaacagcggcacggacgactgctgcgccgacacgtgcggtgatgtgcctaatactgg 305

                                                                       
Query: 380 aaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagcaaggc 439
           | |  ||||| ||||||||||||||||||||| | || |||||||||||||| || ||||
Sbjct: 304 agaccgaagggaagaggattccttttcgaatttcgtcgtctgtgatgtatgatgccaggc 245

                                                                       
Query: 440 actcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggctc 499
           |||||||||| || || ||||||||||| || | |||||| ||||||||||||||||| |
Sbjct: 244 actcagctgctgcttgaagcatgccatctgaaacatgccgggcacctgaaagaagggcac 185

                                                                       
Query: 500 ctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttttctac 559
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||   | |||
Sbjct: 184 ctaaaccaatcccaggaaatagatacatgttgtttgcttgattagcataaccagatttac 125

                                                                       
Query: 560 cattgcttaaagtaacattactgaaagggcttccactagcaaatactgcattttcaccaa 619
           |||| | ||||| ||||||||| ||||||||||||||||||||||  || || || ||||
Sbjct: 124 catttcctaaagaaacattactaaaagggcttccactagcaaatatcgctttatctccaa 65

                           
Query: 620 catgcttgaatacatc 635
           ||||||||||||||||
Sbjct: 64  catgcttgaatacatc 49

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>ref|NM_197228.1| Oryza sativa (japonica cultivar-group) putative mitochondrial
            NAD+-dependent malic enzyme protein (OSJNBb0073N24.24),
            mRNA
          Length = 1766

 Score =  252 bits (127), Expect = 1e-63
 Identities = 190/211 (90%)
 Strand = Plus / Minus

                                                                        
Query: 439  cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 498
            ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 1559 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 1500

                                                                        
Query: 499  cctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 558
            |||||||| || ||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 1499 cctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 1440

                                                                        
Query: 559  ccattgcttaaagtaacattactgaaagggcttccactagcaaatactgcattttcacca 618
            ||||||| |||||| ||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 1439 ccattgcctaaagtgacattactgaaagggcttccactggcaaatactgcattgtctcca 1380

                                           
Query: 619  acatgcttgaatacatcttcaggcgtacatt 649
            ||||  ||||||||||||||||| |||||||
Sbjct: 1379 acatatttgaatacatcttcaggagtacatt 1349

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>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBa0062C05 map S21174S, complete sequence
          Length = 178867

 Score =  115 bits (58), Expect = 2e-22
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                        
Query: 304  ccctcggccaaatcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtg 363
            |||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct: 2131 ccctcggccagatcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtg 2072

                          
Query: 364  atgtgcctgatact 377
            ||||||||||||||
Sbjct: 2071 atgtgcctgatact 2058



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                        
Query: 567  taaagtaacattactgaaagggcttccactagcaaatactgcattttcaccaacatgctt 626
            |||||| ||||||||||||||||||||||| |||||||||||||| || |||||||  ||
Sbjct: 1194 taaagtgacattactgaaagggcttccactggcaaatactgcattgtctccaacatattt 1135

                                   
Query: 627  gaatacatcttcaggcgtacatt 649
            ||||||||||||||| |||||||
Sbjct: 1134 gaatacatcttcaggagtacatt 1112



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                        
Query: 376  cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 435
            ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 1952 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 1893

                
Query: 436  aggc 439
            ||||
Sbjct: 1892 aggc 1889



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 439  cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 498
            ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 1498 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 1439

                    
Query: 499  cctaaacc 506
            ||||||||
Sbjct: 1438 cctaaacc 1431



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                    
Query: 510  cccaggaaacagatacatgttgtttgcttgattagcatagccttttctaccattgc 565
            |||||||||||||||||| ||||||||||||||||| || |||| |||||||||||
Sbjct: 1338 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtctaccattgc 1283



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 199  ttcacaagtgggctgtaaacagggtaccacatcttccgagccac 242
            ||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 2325 ttcacgagggggctgtaaatagggtaccacatcttccgagccac 2282

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>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
             sequence
          Length = 130058

 Score =  115 bits (58), Expect = 2e-22
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                         
Query: 304   ccctcggccaaatcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtg 363
             |||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct: 67989 ccctcggccagatcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtg 67930

                           
Query: 364   atgtgcctgatact 377
             ||||||||||||||
Sbjct: 67929 atgtgcctgatact 67916



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                         
Query: 567   taaagtaacattactgaaagggcttccactagcaaatactgcattttcaccaacatgctt 626
             |||||| ||||||||||||||||||||||| |||||||||||||| || |||||||  ||
Sbjct: 67052 taaagtgacattactgaaagggcttccactggcaaatactgcattgtctccaacatattt 66993

                                    
Query: 627   gaatacatcttcaggcgtacatt 649
             ||||||||||||||| |||||||
Sbjct: 66992 gaatacatcttcaggagtacatt 66970



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                         
Query: 376   cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 435
             ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 67810 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 67751

                 
Query: 436   aggc 439
             ||||
Sbjct: 67750 aggc 67747



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                         
Query: 439   cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 498
             ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 67356 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 67297

                     
Query: 499   cctaaacc 506
             ||||||||
Sbjct: 67296 cctaaacc 67289



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 510   cccaggaaacagatacatgttgtttgcttgattagcatagccttttctaccattgc 565
             |||||||||||||||||| ||||||||||||||||| || |||| |||||||||||
Sbjct: 67196 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtctaccattgc 67141



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 199   ttcacaagtgggctgtaaacagggtaccacatcttccgagccac 242
             ||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 68183 ttcacgagggggctgtaaatagggtaccacatcttccgagccac 68140

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  115 bits (58), Expect = 2e-22
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                            
Query: 304      ccctcggccaaatcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtg 363
                |||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct: 18706711 ccctcggccagatcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtg 18706652

                              
Query: 364      atgtgcctgatact 377
                ||||||||||||||
Sbjct: 18706651 atgtgcctgatact 18706638



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                            
Query: 567      taaagtaacattactgaaagggcttccactagcaaatactgcattttcaccaacatgctt 626
                |||||| ||||||||||||||||||||||| |||||||||||||| || |||||||  ||
Sbjct: 18705774 taaagtgacattactgaaagggcttccactggcaaatactgcattgtctccaacatattt 18705715

                                       
Query: 627      gaatacatcttcaggcgtacatt 649
                ||||||||||||||| |||||||
Sbjct: 18705714 gaatacatcttcaggagtacatt 18705692



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 376      cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 435
                ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 18706532 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 18706473

                    
Query: 436      aggc 439
                ||||
Sbjct: 18706472 aggc 18706469



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                            
Query: 439      cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 498
                ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 18706078 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 18706019

                        
Query: 499      cctaaacc 506
                ||||||||
Sbjct: 18706018 cctaaacc 18706011



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                        
Query: 510      cccaggaaacagatacatgttgtttgcttgattagcatagccttttctaccattgc 565
                |||||||||||||||||| ||||||||||||||||| || |||| |||||||||||
Sbjct: 18705918 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtctaccattgc 18705863



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 199      ttcacaagtgggctgtaaacagggtaccacatcttccgagccac 242
                ||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 18706905 ttcacgagggggctgtaaatagggtaccacatcttccgagccac 18706862

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  115 bits (58), Expect = 2e-22
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                            
Query: 304      ccctcggccaaatcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtg 363
                |||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct: 18717564 ccctcggccagatcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtg 18717505

                              
Query: 364      atgtgcctgatact 377
                ||||||||||||||
Sbjct: 18717504 atgtgcctgatact 18717491



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                            
Query: 567      taaagtaacattactgaaagggcttccactagcaaatactgcattttcaccaacatgctt 626
                |||||| ||||||||||||||||||||||| |||||||||||||| || |||||||  ||
Sbjct: 18716627 taaagtgacattactgaaagggcttccactggcaaatactgcattgtctccaacatattt 18716568

                                       
Query: 627      gaatacatcttcaggcgtacatt 649
                ||||||||||||||| |||||||
Sbjct: 18716567 gaatacatcttcaggagtacatt 18716545



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 376      cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 435
                ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 18717385 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 18717326

                    
Query: 436      aggc 439
                ||||
Sbjct: 18717325 aggc 18717322



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                            
Query: 439      cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 498
                ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 18716931 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 18716872

                        
Query: 499      cctaaacc 506
                ||||||||
Sbjct: 18716871 cctaaacc 18716864



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                        
Query: 510      cccaggaaacagatacatgttgtttgcttgattagcatagccttttctaccattgc 565
                |||||||||||||||||| ||||||||||||||||| || |||| |||||||||||
Sbjct: 18716771 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtctaccattgc 18716716



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 199      ttcacaagtgggctgtaaacagggtaccacatcttccgagccac 242
                ||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 18717758 ttcacgagggggctgtaaatagggtaccacatcttccgagccac 18717715

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>gb|U01162.1|U01162 Amaranthus hypochondriacus C4 photosynthetic NAD-dependent malic
            enzyme subunit alpha precursor mRNA, complete cds
          Length = 2283

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                        
Query: 484  cctgaaagaagggctcctaaaccaatcccaggaaacagatacatgttgtttgcttgatta 543
            |||||||| ||| | |||| ||||||||||||||| || |||||||||||| | ||||||
Sbjct: 1628 cctgaaaggaggacacctagaccaatcccaggaaaaaggtacatgttgtttccctgatta 1569

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>emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59kDa subunit of the
            NAD+-dependent malic enzyme
          Length = 2188

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 478  cgagcacctgaaagaagggctcctaaaccaatcccaggaaacagatacatgttgtttgct 537
            ||||| || |||||||| |||||||  ||||| ||||| || ||||||||||| || |||
Sbjct: 1584 cgagcgccagaaagaagagctcctagcccaatgccagggaagagatacatgttattcgct 1525

                 
Query: 538  tgatt 542
            |||||
Sbjct: 1524 tgatt 1520

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>gb|AY107471.1| Zea mays PCO115183 mRNA sequence
          Length = 1366

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                       
Query: 442 tcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggctcct 501
           ||||||||||| || ||||| ||||| || |||  ||||||||| || ||||||| ||| 
Sbjct: 752 tcagctgcagcctgcagcattccatcagagataacccgagcaccagacagaagggttcca 693

                                                    
Query: 502 aaaccaatcccaggaaacagatacatgttgtttgcttgatt 542
           |  || || |||||||| || |||||||||||  |||||||
Sbjct: 692 agccctattccaggaaagaggtacatgttgttcccttgatt 652

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>emb|AJ404642.1|CAR404642 Cicer arietinum partial ORF for NAD-dependent malic enzyme (malate
            oxidoreductase), exons 1-4
          Length = 1718

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 95/119 (79%)
 Strand = Plus / Minus

                                                                        
Query: 424  atgtatgaagcaaggcactcagctgcagcatgtagcatgccatccgatatatgccgagca 483
            ||||||||||||||||| ||||| || || || | ||| ||||| |  ||| |  |||||
Sbjct: 1104 atgtatgaagcaaggcattcagcagctgcctgcaacattccatctgtaataagatgagca 1045

                                                                       
Query: 484  cctgaaagaagggctcctaaaccaatcccaggaaacagatacatgttgtttgcttgatt 542
            ||||| ||||| | ||| |||||||| || || || || ||||| || |||||||||||
Sbjct: 1044 cctgacagaagtgttcccaaaccaattcctgggaaaaggtacatattatttgcttgatt 986

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>gb|BC029294.1| Homo sapiens ELL associated factor 1, mRNA (cDNA clone
           IMAGE:5169496)
          Length = 822

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 274 ctgaggtcccgaggatccatgtcag 298
           |||||||||||||||||||| ||||
Sbjct: 186 ctgaggtcccgaggatccatctcag 210

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>emb|AL009031.1|HS467D16 Human DNA sequence from clone RP3-467D16 on chromosome 6p22.3-24.1
             Contains the 5' end of the SCA1 gene for spinocerebellar
             ataxia 1 (olivopontocerebellar ataxia 1, autosomal
             dominant, ataxin 1) with a poly-glutamine (CAG repeat)
             polymorphism and the 3' part of the GMPR gene for GMP
             reductase, Guanosine 5'-monophosphate oxidoreductase,
             complete sequence
          Length = 143583

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 571   gtaacattactgaaagggctt 591
             |||||||||||||||||||||
Sbjct: 23638 gtaacattactgaaagggctt 23658

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>ref|XM_965514.1| PREDICTED: Tribolium castaneum similar to CG1318-PA, isoform A
            (LOC659187), mRNA
          Length = 1797

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 461  tgccatccgatatatgccgagcacc 485
            |||||||||||||||| ||||||||
Sbjct: 1487 tgccatccgatatatggcgagcacc 1463

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>emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mitochondrial NAD+-dependent
            malic enzyme (malate dehydrogenase)
          Length = 2251

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 439  cactcagctgcagcatgtagcatgccatc 467
            |||||||||||||| |||| |||||||||
Sbjct: 1656 cactcagctgcagcctgtaacatgccatc 1628

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>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence
          Length = 133862

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 520   agatacatgttgtttgcttga 540
             |||||||||||||||||||||
Sbjct: 67572 agatacatgttgtttgcttga 67552

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>gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-22c10, complete
             sequence
          Length = 123020

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 514   ggaaacagatacatgttgtttgcttgatt 542
             |||||||| ||||||||||| ||||||||
Sbjct: 35933 ggaaacaggtacatgttgttggcttgatt 35961

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 336      ggcgactgcagcgccgacacg 356
                |||||||||||||||||||||
Sbjct: 24626953 ggcgactgcagcgccgacacg 24626933

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>gb|AC090883.1|AC090883 Homo sapiens chromosome 3 clone RP11-117G9 map 3p, complete sequence
          Length = 172400

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 274    ctgaggtcccgaggatccatgtcag 298
              |||||||||||||||||||| ||||
Sbjct: 124329 ctgaggtcccgaggatccatctcag 124305

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>gb|AC027125.5| Homo sapiens chromosome 3 clone RP11-584M7 map 3p, complete sequence
          Length = 173842

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 274   ctgaggtcccgaggatccatgtcag 298
             |||||||||||||||||||| ||||
Sbjct: 65810 ctgaggtcccgaggatccatctcag 65786

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>gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D23, complete sequence
          Length = 98620

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 520  agatacatgttgtttgcttga 540
            |||||||||||||||||||||
Sbjct: 9477 agatacatgttgtttgcttga 9457

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>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0026F07
          Length = 137354

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 336    ggcgactgcagcgccgacacg 356
              |||||||||||||||||||||
Sbjct: 135213 ggcgactgcagcgccgacacg 135193

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>gb|BC084421.1| Xenopus laevis hypothetical LOC495193, mRNA (cDNA clone MGC:86381
            IMAGE:7011145), complete cds
          Length = 1160

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 567  taaagtaacattactgaaagg 587
            |||||||||||||||||||||
Sbjct: 1102 taaagtaacattactgaaagg 1082

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>gb|AC002326.1|AC002326 Genomic sequence from Human 6, complete sequence
          Length = 148750

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 571   gtaacattactgaaagggctt 591
             |||||||||||||||||||||
Sbjct: 34465 gtaacattactgaaagggctt 34485

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>tpd|BR000069.1| TPA: TPA_exp: Ciona intestinalis Ci-ZF(C2H2)-66 mRNA for zinc
           finger protein, complete cds
          Length = 1706

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 307 tcggccaaatcttcatcaaca 327
           |||||||||||||||||||||
Sbjct: 625 tcggccaaatcttcatcaaca 605

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>ref|NM_127548.2| Arabidopsis thaliana malic enzyme/ oxidoreductase, acting on NADH or
            NADPH, NAD or NADP as acceptor AT2G19900 mRNA, complete
            cds
          Length = 2003

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 583  aaagggcttccactagcaaa 602
            ||||||||||||||||||||
Sbjct: 1444 aaagggcttccactagcaaa 1425

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>gb|AC115065.11| Mus musculus chromosome 3, clone RP24-401H12, complete sequence
          Length = 157225

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   aggcactcagctgcagcatg 455
             ||||||||||||||||||||
Sbjct: 26004 aggcactcagctgcagcatg 25985

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>ref|XM_454101.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E03377g predicted mRNA
          Length = 864

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 ccaaatcttcatcaacagca 330
           ||||||||||||||||||||
Sbjct: 79  ccaaatcttcatcaacagca 60

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>gb|AF127019.7| Homo sapiens chromosome 8 clone GS1-188e4 map p23.2, complete
            sequence
          Length = 182548

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 549  gccttttctaccattgctta 568
            ||||||||||||||||||||
Sbjct: 7944 gccttttctaccattgctta 7925

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>gb|AC131110.3| Mus musculus BAC clone RP23-387J23 from chromosome 6, complete sequence
          Length = 205463

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 490    agaagggctcctaaaccaat 509
              ||||||||||||||||||||
Sbjct: 101346 agaagggctcctaaaccaat 101327

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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    ccaaatcttcatcaacagca 330
              ||||||||||||||||||||
Sbjct: 316794 ccaaatcttcatcaacagca 316775

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>gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190237

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 490    agaagggctcctaaaccaat 509
              ||||||||||||||||||||
Sbjct: 182042 agaagggctcctaaaccaat 182061

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>gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete
             sequence
          Length = 126386

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 583   aaagggcttccactagcaaa 602
             ||||||||||||||||||||
Sbjct: 30680 aaagggcttccactagcaaa 30661

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>gb|AF353511.1|AF353511 Porcine epidemic diarrhea virus strain CV777, complete genome
          Length = 28033

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    gtcaacgtaaacaaatgagg 46
             ||||||||||||||||||||
Sbjct: 20624 gtcaacgtaaacaaatgagg 20643

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>gb|AY062734.1| Arabidopsis thaliana malate oxidoreductase (malic enzyme) (At2g19900;
            F6F22.7) mRNA, complete cds
          Length = 2003

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 583  aaagggcttccactagcaaa 602
            ||||||||||||||||||||
Sbjct: 1444 aaagggcttccactagcaaa 1425

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>gb|BC113247.1| Bos taurus cDNA clone IMAGE:8083724
          Length = 2046

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 130  cactaatcagaacaaatgta 149
            ||||||||||||||||||||
Sbjct: 1494 cactaatcagaacaaatgta 1475

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>gb|BT003371.1| Arabidopsis thaliana malate oxidoreductase (malic enzyme) (At2g19900)
            mRNA, complete cds
          Length = 1795

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 583  aaagggcttccactagcaaa 602
            ||||||||||||||||||||
Sbjct: 1394 aaagggcttccactagcaaa 1375

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>gb|AC006210.4| Homo sapiens X BAC GS1-309P15 (Genome Systems Human BAC Library) complete
              sequence
          Length = 185638

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 580    ctgaaagggcttccactagc 599
              ||||||||||||||||||||
Sbjct: 115611 ctgaaagggcttccactagc 115630

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>gb|AC149333.2| Phakopsora pachyrhizi clone JGIAFNA-25D11, complete sequence
          Length = 37057

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   atcttcatcaacagcagcac 334
             ||||||||||||||||||||
Sbjct: 13563 atcttcatcaacagcagcac 13582

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>emb|CT573324.3| CH251-10E6, complete sequence
          Length = 169419

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 580    ctgaaagggcttccactagc 599
              ||||||||||||||||||||
Sbjct: 111820 ctgaaagggcttccactagc 111839


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,378,375
Number of Sequences: 3902068
Number of extensions: 5378375
Number of successful extensions: 101407
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101204
Number of HSP's gapped (non-prelim): 202
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result