ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9m07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
2dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 5e-32
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 147 5e-32
4emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327... 147 5e-32
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
6dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
7dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
8gb|AY107972.1| Zea mays PCO104323 mRNA sequence 107 5e-20
9gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par... 76 2e-10
10gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genom... 66 2e-07
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 2e-07
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
13gb|BT024084.1| Zea mays clone EL01N0552H05 mRNA sequence 54 6e-04
14gb|AY423376.1| Pisum sativum cultivar JI2009 ZG10 (zg10) mRNA, p... 50 0.010
15gb|AY664399.1| Caracal caracal EPM2B gene repeat region, partial... 44 0.59
16gb|AY664398.1| Acinonyx jubatus EPM2B gene repeat region, partia... 44 0.59
17gb|AY664397.1| Uncia uncia EPM2B gene repeat region, partial seq... 44 0.59
18gb|AY664396.1| Panthera pardus EPM2B gene repeat region, partial... 44 0.59
19gb|AY664395.1| Panthera tigris EPM2B gene repeat region, partial... 44 0.59
20gb|AY664394.1| Panthera leo EPM2B gene repeat region, partial se... 44 0.59
21gb|AY664393.1| Felis catus EPM2B gene repeat region, partial seq... 44 0.59
22gb|AY664392.1| Melogale moschata EPM2B gene repeat region, parti... 44 0.59
23gb|AY664390.1| Lutra canadensis EPM2B gene repeat region, partia... 44 0.59
24gb|AY664389.1| Martes pennanti EPM2B gene repeat region, partial... 44 0.59
25gb|AY664386.1| Gulo gulo EPM2B gene repeat region, partial sequence 44 0.59
26gb|AY664385.1| Nasua nasua EPM2B gene repeat region, partial seq... 44 0.59
27gb|AY664382.1| Ursus arctos EPM2B gene repeat region, partial se... 44 0.59
28gb|AY664381.1| Ursus arctos EPM2B gene repeat region, partial se... 44 0.59
29gb|AY664380.1| Ursus maritimus EPM2B gene repeat region, partial... 44 0.59
30gb|AY664379.1| Ursus americanus EPM2B gene repeat region, partia... 44 0.59
31gb|AY664378.1| Potos flavus EPM2B gene repeat region, partial se... 44 0.59
32gb|AY664377.1| Conepatus semistriatus EPM2B gene repeat region, ... 44 0.59
33gb|AY664374.1| Cuon alpinus EPM2B gene repeat region, partial se... 44 0.59
34gb|AY664373.1| Canis aureus EPM2B gene repeat region, partial se... 44 0.59
35gb|AY664372.1| Canis latrans EPM2B gene repeat region, partial s... 44 0.59
36gb|AY664371.1| Canis rufus EPM2B gene repeat region, partial seq... 44 0.59
37gb|AY664370.1| Canis lupus EPM2B gene repeat region, partial seq... 44 0.59
38gb|AY664369.1| Canis familiaris dingo EPM2B gene repeat region, ... 44 0.59
39ref|NM_001006649.1| Canis familiaris NHL repeat containing 1 (NH... 44 0.59
40gb|AY560905.1| Canis familiaris malin (NHLRC1) gene, complete cds 44 0.59
41gb|AY664391.1| Lutra maculicollis EPM2B gene repeat region, part... 42 2.3
42gb|AY664384.1| Bassaricyon beddardi EPM2B gene repeat region, pa... 42 2.3
43gb|AY664383.1| Procyon lotor EPM2B gene repeat region, partial s... 42 2.3
44gb|AC163207.6| Mus musculus chromosome 1, clone RP24-137J11, com... 42 2.3
45emb|AL583856.6| Human DNA sequence from clone RP11-134K13 on chr... 42 2.3
46emb|AL645969.20| Mouse DNA sequence from clone RP23-101H2 on chr... 42 2.3
47emb|AL592465.8| Mouse DNA sequence from clone RP23-36C4 on chrom... 42 2.3
48dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 2.3
49gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome... 42 2.3
50emb|AL713838.1|CNS07YOS Mus musculus chromosome 11 region in the... 42 2.3
51gb|AC167190.2| Mus musculus chromosome 1, clone wi1-784K1, compl... 40 9.2
52ref|NM_001030657.1| Gallus gallus huntingtin interacting protein... 40 9.2
53ref|XM_585048.2| PREDICTED: Bos taurus similar to Huntingtin int... 40 9.2
54ref|XM_543376.2| PREDICTED: Canis familiaris similar to Huntingt... 40 9.2
55gb|AC122816.4| Mus musculus BAC clone RP23-235N10 from chromosom... 40 9.2
56ref|XM_759299.1| Theileria parva strain Muguga chromosome 4 hypo... 40 9.2
57gb|AC163724.4| Mus musculus BAC clone RP23-464C19 from chromosom... 40 9.2
58gb|AC147877.10| Medicago truncatula clone mth2-9b13, complete se... 40 9.2
59gb|AC140849.8| Medicago truncatula clone mth2-17f20, complete se... 40 9.2
60emb|AL445543.20| Human DNA sequence from clone RP11-4H20 on chro... 40 9.2
61emb|AL353771.8| Human DNA sequence from clone RP4-677H15 on chro... 40 9.2
62emb|AL138686.14| Human DNA sequence from clone RP11-189B4 on chr... 40 9.2
63emb|AJ720293.1| Gallus gallus mRNA for hypothetical protein, clo... 40 9.2
64gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 9.2
65dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 40 9.2
66gb|AC098861.2| Homo sapiens BAC clone RP11-297J2 from 4, complet... 40 9.2
67gb|AC147659.5| Pan troglodytes BAC clone CH251-425E12 from chrom... 40 9.2
68dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
69gb|AC069234.35| Homo sapiens 12 BAC RP11-173P15 (Roswell Park Ca... 40 9.2
70dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
71dbj|AP003856.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
72dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
73dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 9.2 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  147 bits (74), Expect = 5e-32
 Identities = 125/142 (88%)
 Strand = Plus / Minus

                                                                            
Query: 520      gtcatctgtagttgcagcattgcgcgcggcctaacgacagtttgtcccagaggcacagca 579
                ||||||||||||| ||||| || || |||||| | |||||||||| ||||||||||||||
Sbjct: 26053737 gtcatctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagca 26053678

                                                                            
Query: 580      tctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgtactggcaga 639
                | ||||  || |||||||| ||||||||||||||||| | |||||||||| |||||||||
Sbjct: 26053677 tttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcaga 26053618

                                      
Query: 640      acttccagctgtggatgtactg 661
                || |||||||||| ||||||||
Sbjct: 26053617 acctccagctgtgaatgtactg 26053596
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>dbj|AK111213.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-A12, full
            insert sequence
          Length = 2495

 Score =  147 bits (74), Expect = 5e-32
 Identities = 125/142 (88%)
 Strand = Plus / Minus

                                                                        
Query: 520  gtcatctgtagttgcagcattgcgcgcggcctaacgacagtttgtcccagaggcacagca 579
            ||||||||||||| ||||| || || |||||| | |||||||||| ||||||||||||||
Sbjct: 2068 gtcatctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagca 2009

                                                                        
Query: 580  tctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgtactggcaga 639
            | ||||  || |||||||| ||||||||||||||||| | |||||||||| |||||||||
Sbjct: 2008 tttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcaga 1949

                                  
Query: 640  acttccagctgtggatgtactg 661
            || |||||||||| ||||||||
Sbjct: 1948 acctccagctgtgaatgtactg 1927
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  147 bits (74), Expect = 5e-32
 Identities = 125/142 (88%)
 Strand = Plus / Minus

                                                                            
Query: 520      gtcatctgtagttgcagcattgcgcgcggcctaacgacagtttgtcccagaggcacagca 579
                ||||||||||||| ||||| || || |||||| | |||||||||| ||||||||||||||
Sbjct: 25981913 gtcatctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagca 25981854

                                                                            
Query: 580      tctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgtactggcaga 639
                | ||||  || |||||||| ||||||||||||||||| | |||||||||| |||||||||
Sbjct: 25981853 tttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcaga 25981794

                                      
Query: 640      acttccagctgtggatgtactg 661
                || |||||||||| ||||||||
Sbjct: 25981793 acctccagctgtgaatgtactg 25981772
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>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161806

 Score =  147 bits (74), Expect = 5e-32
 Identities = 125/142 (88%)
 Strand = Plus / Plus

                                                                         
Query: 520   gtcatctgtagttgcagcattgcgcgcggcctaacgacagtttgtcccagaggcacagca 579
             ||||||||||||| ||||| || || |||||| | |||||||||| ||||||||||||||
Sbjct: 57934 gtcatctgtagttacagcagtgtgctcggcctgatgacagtttgttccagaggcacagca 57993

                                                                         
Query: 580   tctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgtactggcaga 639
             | ||||  || |||||||| ||||||||||||||||| | |||||||||| |||||||||
Sbjct: 57994 tttgccaaggtgactggtaatgcgccgtgaagtagttatgcacgcagccgaactggcaga 58053

                                   
Query: 640   acttccagctgtggatgtactg 661
             || |||||||||| ||||||||
Sbjct: 58054 acctccagctgtgaatgtactg 58075
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  121 bits (61), Expect = 3e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                           
Query: 561     ttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtcc 620
               |||||||||||||||||||| ||||| || |||||||| ||||||||| | ||||| |||
Sbjct: 1742239 ttgtcccagaggcacagcatttgcctcggtgactggtaatgcgccgtgtaatagttctcc 1742180

                                                
Query: 621     acgcagccgtactggcagaacttccagctgtgg 653
               | |||||||||||||||||||||||||||||||
Sbjct: 1742179 aggcagccgtactggcagaacttccagctgtgg 1742147
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>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0009H02
          Length = 155388

 Score =  121 bits (61), Expect = 3e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                         
Query: 561   ttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtcc 620
             |||||||||||||||||||| ||||| || |||||||| ||||||||| | ||||| |||
Sbjct: 24600 ttgtcccagaggcacagcatttgcctcggtgactggtaatgcgccgtgtaatagttctcc 24541

                                              
Query: 621   acgcagccgtactggcagaacttccagctgtgg 653
             | |||||||||||||||||||||||||||||||
Sbjct: 24540 aggcagccgtactggcagaacttccagctgtgg 24508
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>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0582D05
          Length = 150483

 Score =  121 bits (61), Expect = 3e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                          
Query: 561    ttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtcc 620
              |||||||||||||||||||| ||||| || |||||||| ||||||||| | ||||| |||
Sbjct: 141739 ttgtcccagaggcacagcatttgcctcggtgactggtaatgcgccgtgtaatagttctcc 141680

                                               
Query: 621    acgcagccgtactggcagaacttccagctgtgg 653
              | |||||||||||||||||||||||||||||||
Sbjct: 141679 aggcagccgtactggcagaacttccagctgtgg 141647
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>gb|AY107972.1| Zea mays PCO104323 mRNA sequence
          Length = 680

 Score =  107 bits (54), Expect = 5e-20
 Identities = 75/82 (91%)
 Strand = Plus / Minus

                                                                       
Query: 572 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgta 631
           |||||||||||||||||| ||||| ||||| |||||| ||||||| |||| ||| |||||
Sbjct: 223 gcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctccaggcaaccgta 164

                                 
Query: 632 ctggcagaacttccagctgtgg 653
           ||||||||||||||||||||||
Sbjct: 163 ctggcagaacttccagctgtgg 142
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>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2,
              fertilization-independent endosperm proteins, hypothetical
              protein, putative non-LTR retroelement reverse
              transcriptase, OCL5 protein, tryptophan synthase
              beta-subunit, hypothetical proteins, putative AP
              endonuclease, putative RNA polymerase II complex component
              SRB7, putative beta-1,3-glucanase, hypothetical protein,
              TNP2-like protein, hypothetical protein, putative
              phosphate/phosphoenolpyruvate translocator, putative
              protein, hypothetical proteins, putative
              galactosyltransferase family, hypothetical protein,
              putative cytochrome P450 family, putative lipid transfer
              protein, putative photoreceptor-interacting protein, and
              hypothetical protein genes, complete cds; and hypothetical
              protein gene, partial cds
          Length = 202197

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                          
Query: 572    gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgta 631
              ||||||||||||||| || ||||| ||||| || ||| ||||||||  |||||| || ||
Sbjct: 171280 gcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaacacgcaaccata 171221

                                    
Query: 632    ctggcagaacttccagctgtgg 653
              ||||||||| ||||||||||||
Sbjct: 171220 ctggcagaagttccagctgtgg 171199
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>gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genomic sequence, complete
              sequence
          Length = 138345

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                          
Query: 561    ttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtcc 620
              |||||||| |||||   ||||||||  || |||||||||||||| |||| ||||| ||| 
Sbjct: 124365 ttgtcccaaaggcaggccatctgccccggtgactggtagtgcgcggtgaggtagtcgtcg 124424

                                   
Query: 621    acgcagccgtactggcagaac 641
              ||||||||| |||||||||||
Sbjct: 124425 acgcagccgaactggcagaac 124445
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                            
Query: 561      ttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtcc 620
                |||||||| |||||   ||||||||  || |||||||||||||| |||| ||||| ||| 
Sbjct: 27424158 ttgtcccaaaggcaggccatctgccccggtgactggtagtgcgcggtgaggtagtcgtcg 27424217

                                     
Query: 621      acgcagccgtactggcagaac 641
                ||||||||| |||||||||||
Sbjct: 27424218 acgcagccgaactggcagaac 27424238
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                            
Query: 561      ttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtcc 620
                |||||||| |||||   ||||||||  || |||||||||||||| |||| ||||| ||| 
Sbjct: 27515481 ttgtcccaaaggcaggccatctgccccggtgactggtagtgcgcggtgaggtagtcgtcg 27515540

                                     
Query: 621      acgcagccgtactggcagaac 641
                ||||||||| |||||||||||
Sbjct: 27515541 acgcagccgaactggcagaac 27515561
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>gb|BT024084.1| Zea mays clone EL01N0552H05 mRNA sequence
          Length = 1912

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 588  ggggactggtagtgcgccgtgaagtag 614
            |||||||||||||||||||||||||||
Sbjct: 1295 ggggactggtagtgcgccgtgaagtag 1269
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>gb|AY423376.1| Pisum sativum cultivar JI2009 ZG10 (zg10) mRNA, partial cds
          Length = 1381

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 76/93 (81%)
 Strand = Plus / Minus

                                                                        
Query: 560  tttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtc 619
            ||||||||| || || | ||||||||| || || ||||| || || |||||||||   ||
Sbjct: 1125 tttgtcccatagacaaaccatctgccttggtgattggtaatgtgcagtgaagtagccctc 1066

                                             
Query: 620  cacgcagccgtactggcagaacttccagctgtg 652
            || ||| |||||||| || ||||||||||||||
Sbjct: 1065 catgcatccgtactgacaaaacttccagctgtg 1033
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>gb|AY664399.1| Caracal caracal EPM2B gene repeat region, partial sequence
          Length = 327

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 132 gagctccaggaggtgaagcacc 111
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>gb|AY664398.1| Acinonyx jubatus EPM2B gene repeat region, partial sequence
          Length = 361

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 166 gagctccaggaggtgaagcacc 145
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>gb|AY664397.1| Uncia uncia EPM2B gene repeat region, partial sequence
          Length = 358

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 164 gagctccaggaggtgaagcacc 143
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>gb|AY664396.1| Panthera pardus EPM2B gene repeat region, partial sequence
          Length = 358

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 164 gagctccaggaggtgaagcacc 143
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>gb|AY664395.1| Panthera tigris EPM2B gene repeat region, partial sequence
          Length = 339

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 146 gagctccaggaggtgaagcacc 125
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>gb|AY664394.1| Panthera leo EPM2B gene repeat region, partial sequence
          Length = 358

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 166 gagctccaggaggtgaagcacc 145
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>gb|AY664393.1| Felis catus EPM2B gene repeat region, partial sequence
          Length = 356

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 163 gagctccaggaggtgaagcacc 142
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>gb|AY664392.1| Melogale moschata EPM2B gene repeat region, partial sequence
          Length = 355

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 167 gagctccaggaggtgaagcacc 146
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>gb|AY664390.1| Lutra canadensis EPM2B gene repeat region, partial sequence
          Length = 342

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 147 gagctccaggaggtgaagcacc 126
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>gb|AY664389.1| Martes pennanti EPM2B gene repeat region, partial sequence
          Length = 363

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 168 gagctccaggaggtgaagcacc 147
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>gb|AY664386.1| Gulo gulo EPM2B gene repeat region, partial sequence
          Length = 361

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 167 gagctccaggaggtgaagcacc 146
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>gb|AY664385.1| Nasua nasua EPM2B gene repeat region, partial sequence
          Length = 235

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 168 gagctccaggaggtgaagcacc 147
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>gb|AY664382.1| Ursus arctos EPM2B gene repeat region, partial sequence
          Length = 354

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 160 gagctccaggaggtgaagcacc 139
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>gb|AY664381.1| Ursus arctos EPM2B gene repeat region, partial sequence
          Length = 362

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 168 gagctccaggaggtgaagcacc 147
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>gb|AY664380.1| Ursus maritimus EPM2B gene repeat region, partial sequence
          Length = 359

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 165 gagctccaggaggtgaagcacc 144
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>gb|AY664379.1| Ursus americanus EPM2B gene repeat region, partial sequence
          Length = 359

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 164 gagctccaggaggtgaagcacc 143
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>gb|AY664378.1| Potos flavus EPM2B gene repeat region, partial sequence
          Length = 360

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 168 gagctccaggaggtgaagcacc 147
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>gb|AY664377.1| Conepatus semistriatus EPM2B gene repeat region, partial sequence
          Length = 359

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 165 gagctccaggaggtgaagcacc 144
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>gb|AY664374.1| Cuon alpinus EPM2B gene repeat region, partial sequence
          Length = 275

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 171 gagctccaggaggtgaagcacc 150
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>gb|AY664373.1| Canis aureus EPM2B gene repeat region, partial sequence
          Length = 276

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 172 gagctccaggaggtgaagcacc 151
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>gb|AY664372.1| Canis latrans EPM2B gene repeat region, partial sequence
          Length = 286

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 170 gagctccaggaggtgaagcacc 149
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>gb|AY664371.1| Canis rufus EPM2B gene repeat region, partial sequence
          Length = 273

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 167 gagctccaggaggtgaagcacc 146
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>gb|AY664370.1| Canis lupus EPM2B gene repeat region, partial sequence
          Length = 279

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 173 gagctccaggaggtgaagcacc 152
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>gb|AY664369.1| Canis familiaris dingo EPM2B gene repeat region, partial sequence
          Length = 278

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 172 gagctccaggaggtgaagcacc 151
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>ref|NM_001006649.1| Canis familiaris NHL repeat containing 1 (NHLRC1), mRNA
          Length = 1200

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 276 gagctccaggaggtgaagcacc 255
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>gb|AY560905.1| Canis familiaris malin (NHLRC1) gene, complete cds
          Length = 1200

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 242 gagctccaggaggtgaagcacc 263
           ||||||||||||||||||||||
Sbjct: 276 gagctccaggaggtgaagcacc 255
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>gb|AY664391.1| Lutra maculicollis EPM2B gene repeat region, partial sequence
          Length = 352

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 242 gagctccaggaggtgaagcac 262
           |||||||||||||||||||||
Sbjct: 158 gagctccaggaggtgaagcac 138
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>gb|AY664384.1| Bassaricyon beddardi EPM2B gene repeat region, partial sequence
          Length = 352

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 243 agctccaggaggtgaagcacc 263
           |||||||||||||||||||||
Sbjct: 157 agctccaggaggtgaagcacc 137
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>gb|AY664383.1| Procyon lotor EPM2B gene repeat region, partial sequence
          Length = 357

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 243 agctccaggaggtgaagcacc 263
           |||||||||||||||||||||
Sbjct: 162 agctccaggaggtgaagcacc 142
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>gb|AC163207.6| Mus musculus chromosome 1, clone RP24-137J11, complete sequence
          Length = 169102

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 556    acagtttgtcccagaggcaca 576
              |||||||||||||||||||||
Sbjct: 107561 acagtttgtcccagaggcaca 107581
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>emb|AL583856.6| Human DNA sequence from clone RP11-134K13 on chromosome 6 Contains a
             novel gene, a spermine synthase (SMS) pseudogene and a CpG
             island, complete sequence
          Length = 79555

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 566   ccagaggcacagcatctgcct 586
             |||||||||||||||||||||
Sbjct: 69196 ccagaggcacagcatctgcct 69176
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>emb|AL645969.20| Mouse DNA sequence from clone RP23-101H2 on chromosome 11 Contains a
             novel gene, complete sequence
          Length = 154687

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 214   attcatccatccacatatcca 234
             |||||||||||||||||||||
Sbjct: 96809 attcatccatccacatatcca 96789
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>emb|AL592465.8| Mouse DNA sequence from clone RP23-36C4 on chromosome 11 Contains the
              Tbx4 gene for T-box 4, a ribosomal protein L21 (Rpl21)
              pseudogene and the 3' end of the Brip1 gene for BRCA1
              interacting protein C-terminal helicase 1, complete
              sequence
          Length = 238358

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 214    attcatccatccacatatcca 234
              |||||||||||||||||||||
Sbjct: 167850 attcatccatccacatatcca 167870
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 323     ctccgccgccgtcagccgatg 343
               |||||||||||||||||||||
Sbjct: 1183090 ctccgccgccgtcagccgatg 1183110
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>gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome 17, complete sequence
          Length = 206353

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 214   attcatccatccacatatcca 234
             |||||||||||||||||||||
Sbjct: 95497 attcatccatccacatatcca 95517
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>emb|AL713838.1|CNS07YOS Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone 278H24 of library Caltech CITB-BAC from chromosome
             11 of Mus musculus (mouse)
          Length = 150493

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 214   attcatccatccacatatcca 234
             |||||||||||||||||||||
Sbjct: 89351 attcatccatccacatatcca 89371
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>gb|AC167190.2| Mus musculus chromosome 1, clone wi1-784K1, complete sequence
          Length = 41449

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   aagtagattcatccatccacatat 231
             |||||||||||||||||| |||||
Sbjct: 17432 aagtagattcatccatcctcatat 17455
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>ref|NM_001030657.1| Gallus gallus huntingtin interacting protein-1-related (HIP1R),
           mRNA
          Length = 4165

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 633 tggcagaacttccagctgtggatg 656
           |||||||||||||||||| |||||
Sbjct: 295 tggcagaacttccagctgaggatg 272
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>ref|XM_585048.2| PREDICTED: Bos taurus similar to Huntingtin interacting protein 1
           related (Hip1-related) (Hip 12) (LOC508291), partial
           mRNA
          Length = 4357

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 633 tggcagaacttccagctgtggatg 656
           |||||||||||||||||| |||||
Sbjct: 425 tggcagaacttccagctgaggatg 402
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>ref|XM_543376.2| PREDICTED: Canis familiaris similar to Huntingtin interacting
           protein 1 related (Hip1-related) (LOC486251), mRNA
          Length = 3450

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 633 tggcagaacttccagctgtggatg 656
           |||||||||||||||||| |||||
Sbjct: 506 tggcagaacttccagctgaggatg 483
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>gb|AC122816.4| Mus musculus BAC clone RP23-235N10 from chromosome 6, complete sequence
          Length = 177967

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   tcttgtttgtgtacaactga 295
             ||||||||||||||||||||
Sbjct: 33503 tcttgtttgtgtacaactga 33484
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>ref|XM_759299.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
            (TP04_0756) partial mRNA
          Length = 3921

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  ttcaatcaatgaacccaaca 189
            ||||||||||||||||||||
Sbjct: 3213 ttcaatcaatgaacccaaca 3194
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>gb|AC163724.4| Mus musculus BAC clone RP23-464C19 from chromosome 6, complete sequence
          Length = 177662

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   tcttgtttgtgtacaactga 295
             ||||||||||||||||||||
Sbjct: 22052 tcttgtttgtgtacaactga 22071
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>gb|AC147877.10| Medicago truncatula clone mth2-9b13, complete sequence
          Length = 122251

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   gttgtcatgctggcctggtc 418
             ||||||||||||||||||||
Sbjct: 54654 gttgtcatgctggcctggtc 54635
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>gb|AC140849.8| Medicago truncatula clone mth2-17f20, complete sequence
          Length = 136131

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   gttgtcatgctggcctggtc 418
             ||||||||||||||||||||
Sbjct: 15525 gttgtcatgctggcctggtc 15544
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>emb|AL445543.20| Human DNA sequence from clone RP11-4H20 on chromosome 9 Contains the 5'
             end of the gene for a novel protein (FLJ11985, MGC11337)
             (KIAA0870) and a CpG island, complete sequence
          Length = 140327

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   atggtgaggtccatggtctc 325
             ||||||||||||||||||||
Sbjct: 41331 atggtgaggtccatggtctc 41350
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>emb|AL353771.8| Human DNA sequence from clone RP4-677H15 on chromosome 1p31.3-32.3
             Contains gene FLJ20331, two novel genes, the SFRS11 gene
             for arginine/serine-rich 11 splicing factor and the 3' end
             of gene DKFZP566D1346, complete sequence
          Length = 131612

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   gtttgtgtacaactgaggag 299
             ||||||||||||||||||||
Sbjct: 92907 gtttgtgtacaactgaggag 92926
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>emb|AL138686.14| Human DNA sequence from clone RP11-189B4 on chromosome 13q14.11-14.3
             Contains a protein phosphatase 1 regulatory (inhibitor)
             subunit 2 (PPP1R2) (IPP2) pseudogene, an olfactory
             receptor pseudogene, the gene for a novel protein similar
             to COX17 homolog cytochrome c oxidase assembly protein
             (yeast) (COX17) and a FK506 binding protein 1A 12kDa
             (FKBP1A) pseudogene and two novel genes, complete sequence
          Length = 116524

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   tgagctccaggaggtgaagc 260
             ||||||||||||||||||||
Sbjct: 98836 tgagctccaggaggtgaagc 98817
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>emb|AJ720293.1| Gallus gallus mRNA for hypothetical protein, clone 14f2
          Length = 4165

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 633 tggcagaacttccagctgtggatg 656
           |||||||||||||||||| |||||
Sbjct: 295 tggcagaacttccagctgaggatg 272
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     ttcatccatccacatatcca 234
               ||||||||||||||||||||
Sbjct: 7460907 ttcatccatccacatatcca 7460888
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>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 621    acgcagccgtactggcagaa 640
              ||||||||||||||||||||
Sbjct: 903914 acgcagccgtactggcagaa 903933
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>gb|AC098861.2| Homo sapiens BAC clone RP11-297J2 from 4, complete sequence
          Length = 185791

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  catggatgagcgccgtgtca 523
            ||||||||||||||||||||
Sbjct: 7301 catggatgagcgccgtgtca 7320
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>gb|AC147659.5| Pan troglodytes BAC clone CH251-425E12 from chromosome y, complete
             sequence
          Length = 168988

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   ttcatccatccacatatcca 234
             ||||||||||||||||||||
Sbjct: 39887 ttcatccatccacatatcca 39868
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 139      aattttggctcctcgtgttt 158
                ||||||||||||||||||||
Sbjct: 14912423 aattttggctcctcgtgttt 14912404
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>gb|AC069234.35| Homo sapiens 12 BAC RP11-173P15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 183354

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 572   gcacagcatctgcctggggg 591
             ||||||||||||||||||||
Sbjct: 83851 gcacagcatctgcctggggg 83832
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>dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1642C07
          Length = 206004

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    aattttggctcctcgtgttt 158
              ||||||||||||||||||||
Sbjct: 155969 aattttggctcctcgtgttt 155950
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>dbj|AP003856.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0697D09
          Length = 158479

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   aattttggctcctcgtgttt 158
             ||||||||||||||||||||
Sbjct: 97249 aattttggctcctcgtgttt 97230
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>dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0503E05
          Length = 168258

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    aattttggctcctcgtgttt 158
              ||||||||||||||||||||
Sbjct: 148467 aattttggctcctcgtgttt 148448
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     tggacacccgggcggtctgg 396
               ||||||||||||||||||||
Sbjct: 1720350 tggacacccgggcggtctgg 1720369


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,753,658
Number of Sequences: 3902068
Number of extensions: 4753658
Number of successful extensions: 86341
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85909
Number of HSP's gapped (non-prelim): 432
length of query: 671
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 648
effective length of database: 17,143,297,704
effective search space: 11108856912192
effective search space used: 11108856912192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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