Clone Name | rbags9m05 |
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Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 248 bits (125), Expect = 2e-62 Identities = 318/381 (83%), Gaps = 1/381 (0%) Strand = Plus / Plus Query: 161 tactcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcgg 220 |||||||| || || ||||||||| | ||||||||||| ||||||| ||| |||| ||| Sbjct: 1932995 tactcgaatgcacccggatgctccctctgcatcttgaccacctgcttccatgtctcgcgc 1933054 Query: 221 ctcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatcccc 280 | |||||||||||| ||||||| |||||||| |||||| |||||||||||| | || Sbjct: 1933055 tttgagatttggtcgtaccaccttgccacattcttcctgccagtgaagagcttccttcct 1933114 Query: 281 ctctccgagctcacaatgtactgcgagtccggaaggtgacagaggtcagccagggtgaac 340 ||||| || ||||||||||| || |||| ||||||||| | |||||||||||||||||| Sbjct: 1933115 ctctcagaactcacaatgtaatgtgagtttggaaggtgagaaaggtcagccagggtgaac 1933174 Query: 341 tcatcgccagccaggtactcgttcttcgagagtatttcatcgtagacgttgaggacttgc 400 ||||| |||||||||||||| ||||| |||||||| ||||| || || |||||||||||| Sbjct: 1933175 tcatcaccagccaggtactcattctttgagagtatctcatcataaacattgaggacttgc 1933234 Query: 401 tgaagcttcctctcattctctgcaatgaccatgtggtcttgagggatttccaaaacagga 460 ||||| ||| ||||||| |||||||| || ||||| || || || | || | ||| Sbjct: 1933235 tgaagtttcttctcattttctgcaataacagcatggtcctggggaatgttcagatgggga 1933294 Query: 461 gcaaatgccagctgaaacacgagggccgagctgggagggtttgaagttctgagcctctgc 520 |||||||| || || || ||||||||||||||||||||| |||| || ||||| ||||| Sbjct: 1933295 gcaaatgcgagatggaagacgagggccgagctgggaggg-ctgaaattttgagcttctgc 1933353 Query: 521 ttgcagccactgttctattga 541 ||| ||||||||||||||||| Sbjct: 1933354 ttgaagccactgttctattga 1933374 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 323 aggtcagccagggtgaactcatcgccagccaggtactcgttcttcg 368 ||||| |||||||||||||| ||||| || ||||||| |||||||| Sbjct: 1929171 aggtcggccagggtgaactcgtcgccggcgaggtacttgttcttcg 1929216 Score = 52.0 bits (26), Expect = 0.002 Identities = 98/122 (80%) Strand = Plus / Plus Query: 162 actcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcggc 221 |||||||||||||||| ||||| | ||||||||||| ||||||| ||| | |||| Sbjct: 1929004 actcgaacgcgccagggtgctcgctctgcatcttgaccacctgcttccaggaggcgcggt 1929063 Query: 222 tcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatccccc 281 | ||||| | ||| |||||||||| || | ||| ||||||||||||||||| | |||| Sbjct: 1929064 tggagatctcctcgtaccacctcgcgacgtgcttcttggaggtgaagagcttcttgcccc 1929123 Query: 282 tc 283 || Sbjct: 1929124 tc 1929125 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Plus Query: 633 aacaagagtcttgtcaccatgcttgaatgtcac 665 ||||||||||||||| ||||||||||| ||||| Sbjct: 1929569 aacaagagtcttgtcgccatgcttgaaagtcac 1929601
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06, complete sequence Length = 122218 Score = 248 bits (125), Expect = 2e-62 Identities = 318/381 (83%), Gaps = 1/381 (0%) Strand = Plus / Minus Query: 161 tactcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcgg 220 |||||||| || || ||||||||| | ||||||||||| ||||||| ||| |||| ||| Sbjct: 42416 tactcgaatgcacccggatgctccctctgcatcttgaccacctgcttccatgtctcgcgc 42357 Query: 221 ctcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatcccc 280 | |||||||||||| ||||||| |||||||| |||||| |||||||||||| | || Sbjct: 42356 tttgagatttggtcgtaccaccttgccacattcttcctgccagtgaagagcttccttcct 42297 Query: 281 ctctccgagctcacaatgtactgcgagtccggaaggtgacagaggtcagccagggtgaac 340 ||||| || ||||||||||| || |||| ||||||||| | |||||||||||||||||| Sbjct: 42296 ctctcagaactcacaatgtaatgtgagtttggaaggtgagaaaggtcagccagggtgaac 42237 Query: 341 tcatcgccagccaggtactcgttcttcgagagtatttcatcgtagacgttgaggacttgc 400 ||||| |||||||||||||| ||||| |||||||| ||||| || || |||||||||||| Sbjct: 42236 tcatcaccagccaggtactcattctttgagagtatctcatcataaacattgaggacttgc 42177 Query: 401 tgaagcttcctctcattctctgcaatgaccatgtggtcttgagggatttccaaaacagga 460 ||||| ||| ||||||| |||||||| || ||||| || || || | || | ||| Sbjct: 42176 tgaagtttcttctcattttctgcaataacagcatggtcctggggaatgttcagatgggga 42117 Query: 461 gcaaatgccagctgaaacacgagggccgagctgggagggtttgaagttctgagcctctgc 520 |||||||| || || || ||||||||||||||||||||| |||| || ||||| ||||| Sbjct: 42116 gcaaatgcgagatggaagacgagggccgagctgggaggg-ctgaaattttgagcttctgc 42058 Query: 521 ttgcagccactgttctattga 541 ||| ||||||||||||||||| Sbjct: 42057 ttgaagccactgttctattga 42037 Score = 52.0 bits (26), Expect = 0.002 Identities = 98/122 (80%) Strand = Plus / Minus Query: 162 actcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcggc 221 |||||||||||||||| ||||| | ||||||||||| ||||||| ||| | |||| Sbjct: 46407 actcgaacgcgccagggtgctcgctctgcatcttgaccacctgcttccaggaggcgcggt 46348 Query: 222 tcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatccccc 281 | ||||| | ||| |||||||||| || | ||| ||||||||||||||||| | |||| Sbjct: 46347 tggagatctcctcgtaccacctcgcgacgtgcttcttggaggtgaagagcttcttgcccc 46288 Query: 282 tc 283 || Sbjct: 46287 tc 46286 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 323 aggtcagccagggtgaactcatcgccagccaggtactcgttcttcg 368 ||||| |||||||||||||| ||||| || ||||||| |||||||| Sbjct: 46240 aggtcggccagggtgaactcgtcgccggcgaggtacttgttcttcg 46195 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 633 aacaagagtcttgtcaccatgcttgaatgtcac 665 ||||||||||||||| ||||||||||| ||||| Sbjct: 45842 aacaagagtcttgtcgccatgcttgaaagtcac 45810
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 248 bits (125), Expect = 2e-62 Identities = 318/381 (83%), Gaps = 1/381 (0%) Strand = Plus / Plus Query: 161 tactcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcgg 220 |||||||| || || ||||||||| | ||||||||||| ||||||| ||| |||| ||| Sbjct: 1932993 tactcgaatgcacccggatgctccctctgcatcttgaccacctgcttccatgtctcgcgc 1933052 Query: 221 ctcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatcccc 280 | |||||||||||| ||||||| |||||||| |||||| |||||||||||| | || Sbjct: 1933053 tttgagatttggtcgtaccaccttgccacattcttcctgccagtgaagagcttccttcct 1933112 Query: 281 ctctccgagctcacaatgtactgcgagtccggaaggtgacagaggtcagccagggtgaac 340 ||||| || ||||||||||| || |||| ||||||||| | |||||||||||||||||| Sbjct: 1933113 ctctcagaactcacaatgtaatgtgagtttggaaggtgagaaaggtcagccagggtgaac 1933172 Query: 341 tcatcgccagccaggtactcgttcttcgagagtatttcatcgtagacgttgaggacttgc 400 ||||| |||||||||||||| ||||| |||||||| ||||| || || |||||||||||| Sbjct: 1933173 tcatcaccagccaggtactcattctttgagagtatctcatcataaacattgaggacttgc 1933232 Query: 401 tgaagcttcctctcattctctgcaatgaccatgtggtcttgagggatttccaaaacagga 460 ||||| ||| ||||||| |||||||| || ||||| || || || | || | ||| Sbjct: 1933233 tgaagtttcttctcattttctgcaataacagcatggtcctggggaatgttcagatgggga 1933292 Query: 461 gcaaatgccagctgaaacacgagggccgagctgggagggtttgaagttctgagcctctgc 520 |||||||| || || || ||||||||||||||||||||| |||| || ||||| ||||| Sbjct: 1933293 gcaaatgcgagatggaagacgagggccgagctgggaggg-ctgaaattttgagcttctgc 1933351 Query: 521 ttgcagccactgttctattga 541 ||| ||||||||||||||||| Sbjct: 1933352 ttgaagccactgttctattga 1933372 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 323 aggtcagccagggtgaactcatcgccagccaggtactcgttcttcg 368 ||||| |||||||||||||| ||||| || ||||||| |||||||| Sbjct: 1929169 aggtcggccagggtgaactcgtcgccggcgaggtacttgttcttcg 1929214 Score = 52.0 bits (26), Expect = 0.002 Identities = 98/122 (80%) Strand = Plus / Plus Query: 162 actcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcggc 221 |||||||||||||||| ||||| | ||||||||||| ||||||| ||| | |||| Sbjct: 1929002 actcgaacgcgccagggtgctcgctctgcatcttgaccacctgcttccaggaggcgcggt 1929061 Query: 222 tcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatccccc 281 | ||||| | ||| |||||||||| || | ||| ||||||||||||||||| | |||| Sbjct: 1929062 tggagatctcctcgtaccacctcgcgacgtgcttcttggaggtgaagagcttcttgcccc 1929121 Query: 282 tc 283 || Sbjct: 1929122 tc 1929123 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Plus Query: 633 aacaagagtcttgtcaccatgcttgaatgtcac 665 ||||||||||||||| ||||||||||| ||||| Sbjct: 1929567 aacaagagtcttgtcgccatgcttgaaagtcac 1929599
>dbj|AK059226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D08, full insert sequence Length = 631 Score = 248 bits (125), Expect = 2e-62 Identities = 318/381 (83%), Gaps = 1/381 (0%) Strand = Plus / Minus Query: 161 tactcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcgg 220 |||||||| || || ||||||||| | ||||||||||| ||||||| ||| |||| ||| Sbjct: 389 tactcgaatgcacccggatgctccctctgcatcttgaccacctgcttccatgtctcgcgc 330 Query: 221 ctcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatcccc 280 | |||||||||||| ||||||| |||||||| |||||| |||||||||||| | || Sbjct: 329 tttgagatttggtcgtaccaccttgccacattcttcctgccagtgaagagcttccttcct 270 Query: 281 ctctccgagctcacaatgtactgcgagtccggaaggtgacagaggtcagccagggtgaac 340 ||||| || ||||||||||| || |||| ||||||||| | |||||||||||||||||| Sbjct: 269 ctctcagaactcacaatgtaatgtgagtttggaaggtgagaaaggtcagccagggtgaac 210 Query: 341 tcatcgccagccaggtactcgttcttcgagagtatttcatcgtagacgttgaggacttgc 400 ||||| |||||||||||||| ||||| |||||||| ||||| || || |||||||||||| Sbjct: 209 tcatcaccagccaggtactcattctttgagagtatctcatcataaacattgaggacttgc 150 Query: 401 tgaagcttcctctcattctctgcaatgaccatgtggtcttgagggatttccaaaacagga 460 ||||| ||| ||||||| |||||||| || ||||| || || || | || | ||| Sbjct: 149 tgaagtttcttctcattttctgcaataacagcatggtcctggggaatgttcagatgggga 90 Query: 461 gcaaatgccagctgaaacacgagggccgagctgggagggtttgaagttctgagcctctgc 520 |||||||| || || || ||||||||||||||||||||| |||| || ||||| ||||| Sbjct: 89 gcaaatgcgagatggaagacgagggccgagctgggaggg-ctgaaattttgagcttctgc 31 Query: 521 ttgcagccactgttctattga 541 ||| ||||||||||||||||| Sbjct: 30 ttgaagccactgttctattga 10
>ref|XM_470192.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 531 Score = 218 bits (110), Expect = 2e-53 Identities = 227/266 (85%) Strand = Plus / Minus Query: 161 tactcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcgg 220 |||||||| || || ||||||||| | ||||||||||| ||||||| ||| |||| ||| Sbjct: 530 tactcgaatgcacccggatgctccctctgcatcttgaccacctgcttccatgtctcgcgc 471 Query: 221 ctcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatcccc 280 | |||||||||||| ||||||| |||||||| |||||| |||||||||||| | || Sbjct: 470 tttgagatttggtcgtaccaccttgccacattcttcctgccagtgaagagcttccttcct 411 Query: 281 ctctccgagctcacaatgtactgcgagtccggaaggtgacagaggtcagccagggtgaac 340 ||||| || ||||||||||| || |||| ||||||||| | |||||||||||||||||| Sbjct: 410 ctctcagaactcacaatgtaatgtgagtttggaaggtgagaaaggtcagccagggtgaac 351 Query: 341 tcatcgccagccaggtactcgttcttcgagagtatttcatcgtagacgttgaggacttgc 400 ||||| |||||||||||||| ||||| |||||||| ||||| || || |||||||||||| Sbjct: 350 tcatcaccagccaggtactcattctttgagagtatctcatcataaacattgaggacttgc 291 Query: 401 tgaagcttcctctcattctctgcaat 426 ||||| ||| ||||||| |||||||| Sbjct: 290 tgaagtttcttctcattttctgcaat 265
>gb|AF244674.1|AF244674 Zea mays glutathione S-transferase GST 9 mRNA, complete cds Length = 999 Score = 135 bits (68), Expect = 2e-28 Identities = 185/224 (82%) Strand = Plus / Minus Query: 161 tactcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcgg 220 |||| |||||| |||||||| ||| | ||||||||||| |||||| |||| |||| ||| Sbjct: 749 tacttgaacgcaccaggatgttccttctgcatcttgacgacctgcacccatgtctcgcgc 690 Query: 221 ctcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatcccc 280 |||||| ||| |||| |||||||||| ||| || ||||||||||||| | || Sbjct: 689 ttcgagagcctgtcataccatttcgccacattcttcttgttggtgaagagcttccttcct 630 Query: 281 ctctccgagctcacaatgtactgcgagtccggaaggtgacagaggtcagccagggtgaac 340 ||||| | | | || ||||| ||||||| |||||||||| | ||||| |||||||||||| Sbjct: 629 ctctcggtgtttacgatgtagtgcgagttcggaaggtgagacaggtcggccagggtgaac 570 Query: 341 tcatcgccagccaggtactcgttcttcgagagtatttcatcgta 384 ||||| |||||||||||||||||||| ||||||||||| ||||| Sbjct: 569 tcatcaccagccaggtactcgttcttggagagtatttcgtcgta 526 Score = 69.9 bits (35), Expect = 1e-08 Identities = 165/203 (81%), Gaps = 4/203 (1%) Strand = Plus / Minus Query: 467 gccagctgaaacacgagggccgagctgggagggtttgaagttctgagcctctgcttgcag 526 |||||||||||||| || || |||||||||||| |||||||| || ||||| || || Sbjct: 434 gccagctgaaacacaagcgcagagctgggagggcca-aagttctgggcttctgcctggag 376 Query: 527 ccactgttctattgagggcccgttccagagaaccagtcccattagaggttcctgtttccc 586 |||||||||||| || | ||||||| |||| ||||| |||| ||||| || ||||||| Sbjct: 375 ccactgttctatcgatg-cccgttctagagcaccagatccat-agaggctcttgtttccg 318 Query: 587 tggtttgggaactgggtacagaggtaccggcaaatagcccttggat-aacaagagtcttg 645 | ||||| |||||| | || | ||||||||| || |||||| || |||||| || ||| Sbjct: 317 taatttggaaactggttgcaaacgtaccggcatatgtcccttgaatcaacaagggttttg 258 Query: 646 tcaccatgcttgaatgtcacttg 668 || ||||||||||| |||||||| Sbjct: 257 tcgccatgcttgaaggtcacttg 235
>gb|AY111697.1| Zea mays CL1117_-1 mRNA sequence Length = 977 Score = 135 bits (68), Expect = 2e-28 Identities = 185/224 (82%) Strand = Plus / Minus Query: 161 tactcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcgg 220 |||| |||||| |||||||| ||| | ||||||||||| |||||| |||| |||| ||| Sbjct: 749 tacttgaacgcaccaggatgttccttctgcatcttgacgacctgcacccatgtctcgcgc 690 Query: 221 ctcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatcccc 280 |||||| ||| |||| |||||||||| ||| || ||||||||||||| | || Sbjct: 689 ttcgagagcctgtcataccatttcgccacattcttcttgttggtgaagagcttccttcct 630 Query: 281 ctctccgagctcacaatgtactgcgagtccggaaggtgacagaggtcagccagggtgaac 340 ||||| | | | || ||||| ||||||| |||||||||| | ||||| |||||||||||| Sbjct: 629 ctctcggtgtttacgatgtagtgcgagttcggaaggtgagacaggtcggccagggtgaac 570 Query: 341 tcatcgccagccaggtactcgttcttcgagagtatttcatcgta 384 ||||| |||||||||||||||||||| ||||||||||| ||||| Sbjct: 569 tcatcaccagccaggtactcgttcttggagagtatttcgtcgta 526 Score = 69.9 bits (35), Expect = 1e-08 Identities = 165/203 (81%), Gaps = 4/203 (1%) Strand = Plus / Minus Query: 467 gccagctgaaacacgagggccgagctgggagggtttgaagttctgagcctctgcttgcag 526 |||||||||||||| || || |||||||||||| |||||||| || ||||| || || Sbjct: 434 gccagctgaaacacaagcgcagagctgggagggcca-aagttctgggcttctgcctggag 376 Query: 527 ccactgttctattgagggcccgttccagagaaccagtcccattagaggttcctgtttccc 586 |||||||||||| || | ||||||| |||| ||||| |||| ||||| || ||||||| Sbjct: 375 ccactgttctatcgatg-cccgttctagagcaccagatccat-agaggctcttgtttccg 318 Query: 587 tggtttgggaactgggtacagaggtaccggcaaatagcccttggat-aacaagagtcttg 645 | ||||| |||||| | || | ||||||||| || |||||| || |||||| || ||| Sbjct: 317 taatttggaaactggttgcaaacgtaccggcatatgtcccttgaatcaacaagggttttg 258 Query: 646 tcaccatgcttgaatgtcacttg 668 || ||||||||||| |||||||| Sbjct: 257 tcgccatgcttgaaggtcacttg 235
>gb|AY111699.1| Zea mays CL1117_-2 mRNA sequence Length = 633 Score = 123 bits (62), Expect = 8e-25 Identities = 185/226 (81%) Strand = Plus / Minus Query: 162 actcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcggc 221 |||||||||| |||||||| ||| | |||||||| | ||||||| |||||||| ||| Sbjct: 435 actcgaacgcaccaggatgttccttctgcatcttagcgacctgcttccacgtctcgcgct 376 Query: 222 tcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatccccc 281 |||||| | ||| ||||| | ||||| || ||| || |||||||||||| | || | Sbjct: 375 tcgagagcttctcgtaccacttggccacgttcttcttgttagtgaagagcttccttcctc 316 Query: 282 tctccgagctcacaatgtactgcgagtccggaaggtgacagaggtcagccagggtgaact 341 |||| | | |||| ||||| ||||||| ||| ||||| ||||||| ||||||||||||| Sbjct: 315 tctcggtgttcacgatgtagtgcgagttcgggaggtgggagaggtcggccagggtgaact 256 Query: 342 catcgccagccaggtactcgttcttcgagagtatttcatcgtagac 387 | ||||||||||||||||||||| |||||||||| || |||||||| Sbjct: 255 cgtcgccagccaggtactcgttcctcgagagtatctcgtcgtagac 210
>gb|AF244678.1|AF244678 Zea mays glutathione S-transferase GST 13 mRNA, complete cds Length = 1134 Score = 63.9 bits (32), Expect = 6e-07 Identities = 181/230 (78%), Gaps = 3/230 (1%) Strand = Plus / Minus Query: 162 actcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcggc 221 ||||||||||||| || |||||| | |||||||||| |||||| ||||| | |||| Sbjct: 736 actcgaacgcgccggggtgctccctctgcatcttgatgacctgcctccacgagtcgcggg 677 Query: 222 tcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatccccc 281 | ||||| | |||| ||||||| || || | ||||||| |||||||||||| | |||| Sbjct: 676 tggagatcttgtcgtaccacctggcgacgtgcttcctggcggtgaagagctttctgcccc 617 Query: 282 tctc---cgagctcacaatgtactgcgagtccggaaggtgacagaggtcagccagggtga 338 | || ||| | || ||||| || |||| || ||||| ||||||| |||||||||| Sbjct: 616 tgtcggaggagttgacgatgtagtgggagttgggcaggtgggagaggtcggccagggtga 557 Query: 339 actcatcgccagccaggtactcgttcttcgagagtatttcatcgtagacg 388 | || ||||| || |||||||||||||| ||||| || || ||||||||| Sbjct: 556 agtcgtcgccggcgaggtactcgttcttggagaggatgtcgtcgtagacg 507
>gb|AF244677.1|AF244677 Zea mays glutathione S-transferase GST 12 mRNA, complete cds Length = 1198 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 321 agaggtcagccagggtgaactcatcgccagccaggtactcgttcttcgagagtatttcat 380 ||||||| ||||| ||||| || ||||| || |||||||||||||| ||||| || || | Sbjct: 617 agaggtcggccagtgtgaagtcgtcgccggcgaggtactcgttcttggagaggatgtcgt 558 Query: 381 cgtagacg 388 |||||||| Sbjct: 557 cgtagacg 550
>gb|AY103863.1| Zea mays PCO132785 mRNA sequence Length = 959 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 321 agaggtcagccagggtgaactcatcgccagccaggtactcgttcttcgagagtatttcat 380 ||||||| ||||| ||||| || ||||| || |||||||||||||| ||||| || || | Sbjct: 640 agaggtcggccagtgtgaagtcgtcgccggcgaggtactcgttcttggagaggatgtcgt 581 Query: 381 cgtagacg 388 |||||||| Sbjct: 580 cgtagacg 573
>ref|XM_470191.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 678 Score = 52.0 bits (26), Expect = 0.002 Identities = 98/122 (80%) Strand = Plus / Minus Query: 162 actcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcggc 221 |||||||||||||||| ||||| | ||||||||||| ||||||| ||| | |||| Sbjct: 676 actcgaacgcgccagggtgctcgctctgcatcttgaccacctgcttccaggaggcgcggt 617 Query: 222 tcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatccccc 281 | ||||| | ||| |||||||||| || | ||| ||||||||||||||||| | |||| Sbjct: 616 tggagatctcctcgtaccacctcgcgacgtgcttcttggaggtgaagagcttcttgcccc 557 Query: 282 tc 283 || Sbjct: 556 tc 555 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 323 aggtcagccagggtgaactcatcgccagccaggtactcgttcttcg 368 ||||| |||||||||||||| ||||| || ||||||| |||||||| Sbjct: 509 aggtcggccagggtgaactcgtcgccggcgaggtacttgttcttcg 464 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 633 aacaagagtcttgtcaccatgcttgaatgtcac 665 ||||||||||||||| ||||||||||| ||||| Sbjct: 201 aacaagagtcttgtcgccatgcttgaaagtcac 169
>gb|AY533123.1| Oryza sativa (japonica cultivar-group) glutathione S-transferase GSTF15 mRNA, complete cds Length = 678 Score = 52.0 bits (26), Expect = 0.002 Identities = 98/122 (80%) Strand = Plus / Minus Query: 162 actcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcggc 221 |||||||||||||||| ||||| | ||||||||||| ||||||| ||| | |||| Sbjct: 676 actcgaacgcgccagggtgctcgctctgcatcttgaccacctgcttccaggaggcgcggt 617 Query: 222 tcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatccccc 281 | ||||| | ||| |||||||||| || | ||| ||||||||||||||||| | |||| Sbjct: 616 tggagatctcctcgtaccacctcgcgacgtgcttcttggaggtgaagagcttcttgcccc 557 Query: 282 tc 283 || Sbjct: 556 tc 555 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 323 aggtcagccagggtgaactcatcgccagccaggtactcgttcttcg 368 ||||| |||||||||||||| ||||| || ||||||| |||||||| Sbjct: 509 aggtcggccagggtgaactcgtcgccggcgaggtacttgttcttcg 464 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 633 aacaagagtcttgtcaccatgcttgaatgtcac 665 ||||||||||||||| ||||||||||| ||||| Sbjct: 201 aacaagagtcttgtcgccatgcttgaaagtcac 169
>dbj|AK059955.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D02, full insert sequence Length = 951 Score = 52.0 bits (26), Expect = 0.002 Identities = 98/122 (80%) Strand = Plus / Minus Query: 162 actcgaacgcgccaggatgctccatttgcatcttgacaacctgctcccacgtcttgcggc 221 |||||||||||||||| ||||| | ||||||||||| ||||||| ||| | |||| Sbjct: 784 actcgaacgcgccagggtgctcgctctgcatcttgaccacctgcttccaggaggcgcggt 725 Query: 222 tcgagatttggtcgaaccacctcgccacatttttcctggaggtgaagagcttcatccccc 281 | ||||| | ||| |||||||||| || | ||| ||||||||||||||||| | |||| Sbjct: 724 tggagatctcctcgtaccacctcgcgacgtgcttcttggaggtgaagagcttcttgcccc 665 Query: 282 tc 283 || Sbjct: 664 tc 663 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 323 aggtcagccagggtgaactcatcgccagccaggtactcgttcttcg 368 ||||| |||||||||||||| ||||| || ||||||| |||||||| Sbjct: 617 aggtcggccagggtgaactcgtcgccggcgaggtacttgttcttcg 572 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 633 aacaagagtcttgtcaccatgcttgaatgtcac 665 ||||||||||||||| ||||||||||| ||||| Sbjct: 309 aacaagagtcttgtcgccatgcttgaaagtcac 277
>gb|AC122422.4| Mus musculus BAC clone RP24-169N11 from chromosome 17, complete sequence Length = 181626 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 ggacttgctgaagcttcctctcatt 417 |||||||||||||||| |||||||| Sbjct: 119348 ggacttgctgaagcttgctctcatt 119372
>gb|AC154177.2| Mus musculus BAC clone RP23-465J20 from chromosome 17, complete sequence Length = 206481 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 ggacttgctgaagcttcctctcatt 417 |||||||||||||||| |||||||| Sbjct: 1877 ggacttgctgaagcttgctctcatt 1901
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cgaacgcgccaggatgctcc 184 |||||||||||||||||||| Sbjct: 2291102 cgaacgcgccaggatgctcc 2291083
>gb|AC099412.4| Homo sapiens BAC clone RP11-345D8 from 7, complete sequence Length = 45701 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 gaaagaacacatgaaaataa 97 |||||||||||||||||||| Sbjct: 28189 gaaagaacacatgaaaataa 28170
>emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chromosome 10 Contains the 5' end of the RSU1 gene for Ras suppressor protein 1, the 3' end of the CUBN gene for cubilin (intrinsic factor-cobalamin receptor) and a CpG island, complete sequence Length = 184703 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 aggttcctgtttccctggtt 591 |||||||||||||||||||| Sbjct: 74640 aggttcctgtttccctggtt 74659
>gb|AC159655.8| Mus musculus 6 BAC RP24-559F15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 200889 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 ctctgcttgcagccactgtt 534 |||||||||||||||||||| Sbjct: 84411 ctctgcttgcagccactgtt 84430
>ref|NR_002656.1| Caenorhabditis elegans strain Bristol N2 chromosome III Length = 963 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 ccagggtgaactcatcgcca 349 |||||||||||||||||||| Sbjct: 844 ccagggtgaactcatcgcca 825
>emb|Y07752.1|VCPHEROPH V.carteri mRNA for pherophorin-S Length = 1800 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ttgaagttctgagcctctgc 520 |||||||||||||||||||| Sbjct: 1160 ttgaagttctgagcctctgc 1141
>gb|AC008013.8| Homo sapiens 12 BAC RP11-551L14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168986 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 agcttcatccccctctccgagctc 292 ||||||||||||||||||| |||| Sbjct: 23398 agcttcatccccctctccgtgctc 23421
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 gctcccacgtcttgcggctcgaga 227 ||||||||||| |||||||||||| Sbjct: 213590 gctcccacgtcgtgcggctcgaga 213567
>gb|AC137723.6| Homo sapiens chromosome 17, clone RP11-1182P23, complete sequence Length = 57644 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 ctcattctctgcaatgacca 431 |||||||||||||||||||| Sbjct: 40619 ctcattctctgcaatgacca 40638
>emb|Z81141.2|CEZC47 Caenorhabditis elegans Cosmid ZC47, complete sequence Length = 26347 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 ccagggtgaactcatcgcca 349 |||||||||||||||||||| Sbjct: 17196 ccagggtgaactcatcgcca 17215 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 ccagggtgaactcatcgcca 349 |||||||||||||||||||| Sbjct: 12728 ccagggtgaactcatcgcca 12747
>dbj|AP006114.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT43M15, TM0198a, complete sequence Length = 75051 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 atgacgaaagaacacatgaaaataagat 100 |||| ||||||| ||||||||||||||| Sbjct: 30383 atgaagaaagaatacatgaaaataagat 30410
>emb|AL732392.8| Mouse DNA sequence from clone RP23-171G10 on chromosome X, complete sequence Length = 188116 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 ttccctggtttgggaactgg 601 |||||||||||||||||||| Sbjct: 59695 ttccctggtttgggaactgg 59676 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,036,752 Number of Sequences: 3902068 Number of extensions: 5036752 Number of successful extensions: 90224 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90073 Number of HSP's gapped (non-prelim): 144 length of query: 675 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 652 effective length of database: 17,143,297,704 effective search space: 11177430103008 effective search space used: 11177430103008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)