ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags9m03 |
|---|---|
| Clone Library Name | barley_pub |
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 204 bits (519), Expect = 2e-52 Identities = 94/172 (54%), Positives = 131/172 (76%), Gaps = 1/172 (0%) Frame = -2 Query: 666 RVDDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSRDDEDSLIPNPLTLNSENIQDDGI 487 R+DDRS+W LAIPLV+PRMIA+HDL + D+E++++P P+ L SE++ D+G+ Sbjct: 925 RIDDRSFWINHVSSLSTPLAIPLVYPRMIAVHDLDANDNEENVVPCPIPLQSEHLSDEGV 984 Query: 486 YLLENGEDGFIYVGNAVNPATLEQIFGLSSLAGAPNLLALEQFDNALSRKVNEVVNEIRR 307 Y LENGEDG IY+G +VN L+++F + S A P+ L+++DN LS+K N+VVNEIRR Sbjct: 985 YFLENGEDGLIYIGESVNSDILQKLFNVRSAAELPSQYVLQKYDNQLSKKFNDVVNEIRR 1044 Query: 306 QRCSYLRLRLCRKGDPSGD-FFRSLLVEDKAPGGLSYVEFLVHVHRQIQSKM 154 QR SYLR++LC+KGDP+G+ F+S +VED+ GG SYV+FLV VHRQIQ K+ Sbjct: 1045 QRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQHKL 1096
>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640| Length = 1069 Score = 149 bits (377), Expect = 6e-36 Identities = 68/127 (53%), Positives = 94/127 (74%) Frame = -2 Query: 666 RVDDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSRDDEDSLIPNPLTLNSENIQDDGI 487 R+DDRS+W LAIPLV+PRMI++HDL +D E S++P P+ L+SE+I ++G+ Sbjct: 909 RIDDRSFWINYVSSLSTPLAIPLVYPRMISVHDLDVKDTEGSVLPPPIPLSSEHISNEGV 968 Query: 486 YLLENGEDGFIYVGNAVNPATLEQIFGLSSLAGAPNLLALEQFDNALSRKVNEVVNEIRR 307 Y LENGEDG ++VG +V+ L+++F +SS A PN L+Q+DN LS+K N+ VNEIRR Sbjct: 969 YFLENGEDGLLFVGESVDSDILQKLFAVSSAAEIPNQFVLQQYDNQLSKKFNDAVNEIRR 1028 Query: 306 QRCSYLR 286 QRCSYLR Sbjct: 1029 QRCSYLR 1035
>SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-related protein C)| Length = 1094 Score = 93.2 bits (230), Expect = 6e-19 Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 2/172 (1%) Frame = -2 Query: 660 DDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSRDDEDSLIPNPLTLNSENIQDDGIYL 481 DDR+Y V +PR++ L T E + P + + E + + IYL Sbjct: 926 DDRAYVRQLVTSMDVTETNVFFYPRLLPL---TKSPVESTTEPPAVRASEERLSNGDIYL 982 Query: 480 LENGEDGFIYVGNAVNPATLEQIFGLSSLAGAPN-LLALEQFDNALSRKVNEVVNEIRRQ 304 LENG + F++VG +V ++ +F +SS + + L L DN LS+KV +++ +R Q Sbjct: 983 LENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQ 1042 Query: 303 RCSYLRLRLCRKGDPSGDFFRSLLVEDKA-PGGLSYVEFLVHVHRQIQSKMT 151 R Y++L + ++ D F+ LVEDK+ GG SYV+FL H+H++I+ ++ Sbjct: 1043 RSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 1094
>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)| Length = 1032 Score = 70.9 bits (172), Expect = 3e-12 Identities = 41/145 (28%), Positives = 83/145 (57%), Gaps = 2/145 (1%) Frame = -2 Query: 594 FPRMIALHDLTSRDDEDSLIPNPLTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQ 415 +P+++ +H L D + +++P + + + ++GI+LL NG F+++G + P ++ Sbjct: 886 YPQLLPIHTL---DVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQG 942 Query: 414 IFGLSSLAGA-PNLLALEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRS 238 IF + S A ++ L + N S+++ ++ I+++R ++L + ++ + FR Sbjct: 943 IFNVPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQ 1002 Query: 237 LLVEDKAP-GGLSYVEFLVHVHRQI 166 LVEDK GG SYV+FL VH++I Sbjct: 1003 FLVEDKGLYGGSSYVDFLCCVHKEI 1027
>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)| Length = 1268 Score = 65.1 bits (157), Expect = 2e-10 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 6/173 (3%) Frame = -2 Query: 666 RVDDRSYWXXXXXXXXVLLAIPLVFPRMIALHDLTSRDD---EDSLIPNP--LTLNSENI 502 R+DDR Y ++ + ++ P + + LT D ++P P L++E + Sbjct: 1094 RLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKL 1153 Query: 501 QDDGIYLLENGEDGFIYVGNAVNPATLEQIFGLSSLAGAPNLLA-LEQFDNALSRKVNEV 325 +G +L++ G +I+VG + +E + G ++ A P + L + D S + Sbjct: 1154 TREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSF 1213 Query: 324 VNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQI 166 + +R R L + + P+ F L+ED+ SY EFL+HV +QI Sbjct: 1214 ITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQI 1266
>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)| Length = 1090 Score = 63.9 bits (154), Expect = 4e-10 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 3/144 (2%) Frame = -2 Query: 588 RMIALHDLTSRDDEDSLIPNP--LTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQ 415 R+ L D + + D IP P L L+ E + DG +L++ G ++VG + L Q Sbjct: 945 RVDNLSDEGALNINDRTIPQPPILQLSVEKLSRDGAFLMDAGSLLMLWVGRNCSQNFLSQ 1004 Query: 414 IFGLSSLAGAPNLLA-LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRS 238 + G+ + A P + L + D S ++ ++ +R QR + L + R+ F Sbjct: 1005 VLGVQNYASIPQTMTDLPELDTPESARIAAFISWLREQRPFFPVLYVIREESLMKAAFLQ 1064 Query: 237 LLVEDKAPGGLSYVEFLVHVHRQI 166 LVED+ LSY EFL+H+ +Q+ Sbjct: 1065 SLVEDRTESALSYYEFLLHIQQQV 1088
>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)| (Fragment) Length = 1078 Score = 63.9 bits (154), Expect = 4e-10 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 3/144 (2%) Frame = -2 Query: 588 RMIALHDLTSRDDEDSLIPNP--LTLNSENIQDDGIYLLENGEDGFIYVGNAVNPATLEQ 415 R+ L D + + D IP P L L+ E + DG +L++ G ++VG L Q Sbjct: 933 RVDNLSDEGALNISDRTIPQPPILQLSVEKLSRDGAFLMDAGSVLMLWVGKNCTQNFLSQ 992 Query: 414 IFGLSSLAGAPNLLA-LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRS 238 + G+ + A P + L + D S ++ ++ +R QR + L + R P F Sbjct: 993 VLGVQNYASIPQPMTDLPELDTPESARIIAFISWLREQRPFFPILYVIRDESPMKANFLQ 1052 Query: 237 LLVEDKAPGGLSYVEFLVHVHRQI 166 ++ED+ LSY EFL+H+ +Q+ Sbjct: 1053 NMIEDRTESALSYYEFLLHIQQQV 1076
>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II| Length = 891 Score = 60.8 bits (146), Expect = 3e-09 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 14/161 (8%) Frame = -2 Query: 597 VFPRMIALHDLTSRD-----DEDSLIP--NPLTLNSEN--IQDDGIYLLENGEDGFIYVG 445 ++P + ALH L D + +P PL + + I+D G +L+ G+ +++ Sbjct: 729 LYPNIYALHQLQPTDCLPDPENTGCLPINMPLCVRASRKFIEDGGAFLIVTGQKSYLWFH 788 Query: 444 NAVNPATLEQIFGLSSLAGAPNLLALE--QFDNALSRKVNEVVNEIRRQRCSY-LRLRLC 274 +P L+ + G+ SL +L ALE D LS +V +++ +R Q S L ++ Sbjct: 789 QRTSPLLLQDLLGVESLEDIDSLKALELPTLDTVLSVQVRNLLSSLRMQFPSMALHPQIV 848 Query: 273 RKG--DPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSK 157 R+G G+ F S LVED G Y++FL +H + ++ Sbjct: 849 RQGLDGSEGEIF-STLVEDNTREGFGYLDFLTKIHESLHTQ 888
>YIY8_SCHPO (Q9UUI5) Hypothetical protein C22F8.08 in chromosome I| Length = 926 Score = 59.7 bits (143), Expect = 8e-09 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 10/160 (6%) Frame = -2 Query: 612 LAIPLVFPRMIALHDLTSR----DDEDSLIPNPLTLNSENIQDDGIYLLENGEDGFIYVG 445 L + ++P + +LHD+ ++ ++P+ L L S +Q G+YL++ F+Y+G Sbjct: 766 LLMRYIYPTLYSLHDMPIEAGTVTEQGVVLPSALNLTSALLQSFGLYLVDTHIHQFLYIG 825 Query: 444 NAVNPATLEQIFGLSSLAG-APNLLALEQFDNALSRKVNEVVNEIR---RQRCSYLRLRL 277 P L FG++SLA + DN L+ ++N ++ ++R + L L Sbjct: 826 KDAVPQLLIDAFGVNSLADLKAGRFTMPVIDNPLNVRINAILGKLRSLDKGSTIMPSLYL 885 Query: 276 CR-KGDPS-GDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQ 163 R GDP +F S VED++ SY++FL + +++ Sbjct: 886 VRGDGDPQLRSWFFSHFVEDRSENSPSYLQFLQTLKEKVR 925
>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100| Length = 1038 Score = 55.8 bits (133), Expect = 1e-07 Identities = 37/155 (23%), Positives = 81/155 (52%), Gaps = 7/155 (4%) Frame = -2 Query: 606 IPLVFPRMIALHDL----TSRDDEDSLIPNPLTLNSENIQDDGIYLLENGEDGFIYVGNA 439 + L++P + + + ++ D+ + L L +E++ G+Y+ ++G ++ G Sbjct: 883 LKLLYPNLFRVDEWLLKPSAAHDDFKDVLRRLPLAAESLDSRGLYIYDDGFRLVLWFGRM 942 Query: 438 VNPATLEQIFGLSSLAGAPNLLALEQFDNALSRKVNEVVNEIRRQRCSYLRLR-LCRKGD 262 ++P + + G+ A + EQ +N +S+K+ +V ++R SY + L R+G+ Sbjct: 943 LSPDIAKNLLGVDFAADLSRVTFQEQ-ENGMSKKLMRLVKKLRESDPSYHPMCFLVRQGE 1001 Query: 261 PSGDFFRSL--LVEDKAPGGLSYVEFLVHVHRQIQ 163 + F L L+ED+ G YV++++ +HRQ+Q Sbjct: 1002 QPREGFLLLRNLIEDQMGGSSGYVDWILQLHRQVQ 1036
>SEC24_YEAST (P40482) Protein transport protein Sec24 (Abnormal nuclear morphology| 1) Length = 926 Score = 48.1 bits (113), Expect = 2e-05 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 31/168 (18%) Frame = -2 Query: 597 VFPRMIALHDLTSR-----DDEDS------LIPNPLTLNSENIQDDGIYLLENGEDGFIY 451 ++P + +LHD+ ED ++P P+ S + G+YL++NG + F++ Sbjct: 752 IYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLW 811 Query: 450 VGNAVNPATLEQIFGLSSL----AGAPNLLALEQFDNALSRKVNEVVNEIRRQR--CSYL 289 +G PA + +FG + G + +E ++ +++V ++N++R +Y Sbjct: 812 MGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVE--NSEFNQRVRNIINQLRNHDDVITYQ 869 Query: 288 RLRLCRKGDPSGD--------------FFRSLLVEDKAPGGLSYVEFL 187 L + R S + S LVEDK SY EFL Sbjct: 870 SLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYREFL 917
>SFB2_YEAST (P53953) SED5-binding protein 2 (SEC24-related protein 2)| Length = 876 Score = 39.3 bits (90), Expect = 0.011 Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 25/165 (15%) Frame = -2 Query: 606 IPLVFPRMIALHDLTSRD-----DEDSLIPNPLTLNSENIQDDGIYLLENGEDGFIYVGN 442 I ++P + +LHD+ + +++P P+ + G+YL++N + F++VG Sbjct: 705 IKSIYPTVYSLHDMPDEVGLPDFEGKTVLPEPINATISLFERYGLYLIDNSAELFLWVGG 764 Query: 441 AVNPATLEQIFGLSSLA----GAPNLLALEQFDNALSRKVNEVVNEIRRQRCSYLRLRLC 274 P L +F +++ G L L D+ + ++ ++ IR + L Sbjct: 765 DAVPELLIDVFNTDTISQIPVGKSELPLLN--DSPFNERLRRIIGRIRENNDTITFQSLY 822 Query: 273 RKGDPSGD----------------FFRSLLVEDKAPGGLSYVEFL 187 PS + + S LVEDK SY E+L Sbjct: 823 IIRGPSINEPANLNSEKDMASLRLWVLSTLVEDKVLNCASYREYL 867
>METK_THEAC (Q9HM12) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 400 Score = 32.0 bits (71), Expect = 1.7 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Frame = -2 Query: 519 LNSENIQDDGI---YL------LENGEDGFIYVGNAVNP-ATLEQIFGLSSLAGAPNLLA 370 +N+ +I++DG YL +ENG+DG + GN VN T + + + AG + Sbjct: 251 INTADIKEDGKAVGYLTVTGMSMENGDDGSVGRGNRVNGLITPYRAMSMEAAAGKNPVTH 310 Query: 369 LEQFDNALSRKV-NEVVNE 316 + + N LS K+ N++V E Sbjct: 311 VGKLYNVLSNKIANDIVKE 329
>METK_PICTO (Q6L123) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 402 Score = 32.0 bits (71), Expect = 1.7 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Frame = -2 Query: 519 LNSENIQDDGIYLL-------ENGEDGFIYVGNAVNP-ATLEQIFGLSSLAGAPNLLALE 364 +N+ +I+DD +Y L ENG+DG + GN VN T + + + AG + + Sbjct: 255 VNTGDIKDDKVYYLTVTGLSMENGDDGSVGRGNRVNGLITPYRPMSMEAAAGKNPVTHVG 314 Query: 363 QFDNALSRKV-NEVVNE 316 + N LS + N++V E Sbjct: 315 KLYNVLSNIIANDIVKE 331
>SODC_PHOLE (P00446) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)| Length = 173 Score = 31.6 bits (70), Expect = 2.2 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = +3 Query: 210 HQVLCPPPTANGRNLQTGRPFGTVSVSSKSISVALFHSRLHSLSWTMH 353 HQ L T +LQTG+P GT+ +S V +F L L+ MH Sbjct: 18 HQALAQDLTVKMTDLQTGKPVGTIELSQNKYGV-VFTPELADLTPGMH 64
>YCF1_ADICA (Q85FG7) Hypothetical 199.0 kDa protein ycf1| Length = 1691 Score = 30.8 bits (68), Expect = 3.8 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = +1 Query: 103 GIDNLYQPKYHTNEASGHLALDLPVNMYEEL---HIGKATRCFVLHQQRTEE--ISRRVA 267 G+ NLYQPK + + H L + E+ H+ T CF +T+E +VA Sbjct: 1170 GVSNLYQPKMYEKQTPVHYNLIATKFLSPEIRNNHVNDLTMCFDTETGKTDEEFFDEKVA 1229 Query: 268 LSAQS 282 S ++ Sbjct: 1230 RSIEN 1234
>UVRC_PROMA (Q7VBY8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 640 Score = 30.4 bits (67), Expect = 5.0 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Frame = -2 Query: 567 LTSRDDEDSLIPNPLTLNS--ENI-QDDGIYLLENGEDGFIYVGNAVN 433 + S +D LI +P L + +NI + G YL+++ ED IY+G ++N Sbjct: 1 MRSLNDNLPLILDPTRLKTTLDNIPKAPGCYLMKDNEDNIIYIGKSIN 48
>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)| (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte nuclear envelope protein 1) (Myne-1) (Enaptin) Length = 8797 Score = 30.4 bits (67), Expect = 5.0 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%) Frame = +1 Query: 151 GHLALDLPVNMYEELHI--GKATRCFVLHQQRTEEISRR-VALSAQSQ-SQVRASLS 309 GHLA + E+LH+ GKA CF L ++ ++ + RR +ALS ++ Q ASLS Sbjct: 1825 GHLAKLGSLGRAEDLHLLQGKAEDCFQLFEEASQVVERRQLALSHLAEFLQSHASLS 1881
>ATG5_NEUCR (Q872C6) Autophagy protein 5| Length = 397 Score = 29.6 bits (65), Expect = 8.5 Identities = 22/72 (30%), Positives = 31/72 (43%) Frame = +3 Query: 213 QVLCPPPTANGRNLQTGRPFGTVSVSSKSISVALFHSRLHSLSWTMHYQIAPMPTDLVHQ 392 Q L PP N R QT + + KS+ ALF S + ++ AP+P + Sbjct: 324 QTLVPPRGPNNRTPQT------LGQALKSLLPALFPSSRDPVLASVILHGAPVPFSAPLE 377 Query: 393 PRMRDQIFAPGW 428 MRD + GW Sbjct: 378 ELMRDASYPDGW 389 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,378,992 Number of Sequences: 219361 Number of extensions: 2434539 Number of successful extensions: 6846 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6592 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6840 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
